Literature DB >> 29993639

A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-Disease Association Network.

Pengyao Ping, Lei Wang, Linai Kuang, Songtao Ye, Muhammad Faisal Buland Iqbal, Tingrui Pei.   

Abstract

An increasing number of studies have indicated that long-non-coding RNAs (lncRNAs) play critical roles in many important biological processes. Predicting potential lncRNA-disease associations can improve our understanding of the molecular mechanisms of human diseases and aid in finding biomarkers for disease diagnosis, treatment, and prevention. In this paper, we constructed a bipartite network based on known lncRNA-disease associations; based on this work, we proposed a novel model for inferring potential lncRNA-disease associations. Specifically, we analyzed the properties of the bipartite network and found that it closely followed a power-law distribution. Moreover, to evaluate the performance of our model, a leave-one-out cross-validation (LOOCV) framework was implemented, and the simulation results showed that our computational model significantly outperformed previous state-of-the-art models, with AUCs of 0.8825, 0.9004, and 0.9292 for known lncRNA-disease associations obtained from the LncRNADisease database, Lnc2Cancer database, and MNDR database, respectively. Thus, our approach may be an excellent addition to the biomedical research field in the future.

Entities:  

Year:  2018        PMID: 29993639     DOI: 10.1109/TCBB.2018.2827373

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  22 in total

1.  LLCLPLDA: a novel model for predicting lncRNA-disease associations.

Authors:  Guobo Xie; Shuhuang Huang; Yu Luo; Lei Ma; Zhiyi Lin; Yuping Sun
Journal:  Mol Genet Genomics       Date:  2019-06-28       Impact factor: 3.291

2.  DSCMF: prediction of LncRNA-disease associations based on dual sparse collaborative matrix factorization.

Authors:  Jin-Xing Liu; Ming-Ming Gao; Zhen Cui; Ying-Lian Gao; Feng Li
Journal:  BMC Bioinformatics       Date:  2021-05-12       Impact factor: 3.169

3.  Dual Attention Mechanisms and Feature Fusion Networks Based Method for Predicting LncRNA-Disease Associations.

Authors:  Yu Liu; Yingying Yu; Shimin Zhao
Journal:  Interdiscip Sci       Date:  2022-01-24       Impact factor: 2.233

4.  BiGAN: LncRNA-disease association prediction based on bidirectional generative adversarial network.

Authors:  Qiang Yang; Xiaokun Li
Journal:  BMC Bioinformatics       Date:  2021-06-30       Impact factor: 3.169

5.  A Novel Probability Model for LncRNA⁻Disease Association Prediction Based on the Naïve Bayesian Classifier.

Authors:  Jingwen Yu; Pengyao Ping; Lei Wang; Linai Kuang; Xueyong Li; Zhelun Wu
Journal:  Genes (Basel)       Date:  2018-07-08       Impact factor: 4.096

6.  Computational Methods and Applications for Identifying Disease-Associated lncRNAs as Potential Biomarkers and Therapeutic Targets.

Authors:  Congcong Yan; Zicheng Zhang; Siqi Bao; Ping Hou; Meng Zhou; Chongyong Xu; Jie Sun
Journal:  Mol Ther Nucleic Acids       Date:  2020-05-21       Impact factor: 8.886

7.  LncRNA-Disease Association Prediction Using Two-Side Sparse Self-Representation.

Authors:  Le Ou-Yang; Jiang Huang; Xiao-Fei Zhang; Yan-Ran Li; Yiwen Sun; Shan He; Zexuan Zhu
Journal:  Front Genet       Date:  2019-05-28       Impact factor: 4.599

8.  A Novel Method for Predicting Disease-Associated LncRNA-MiRNA Pairs Based on the Higher-Order Orthogonal Iteration.

Authors:  Zhanwei Xuan; Xiang Feng; Jingwen Yu; Pengyao Ping; Haochen Zhao; Xianyou Zhu; Lei Wang
Journal:  Comput Math Methods Med       Date:  2019-05-02       Impact factor: 2.238

9.  A Probabilistic Matrix Factorization Method for Identifying lncRNA-disease Associations.

Authors:  Zhanwei Xuan; Jiechen Li; Jingwen Yu; Xiang Feng; Bihai Zhao; Lei Wang
Journal:  Genes (Basel)       Date:  2019-02-08       Impact factor: 4.096

10.  LDAPred: A Method Based on Information Flow Propagation and a Convolutional Neural Network for the Prediction of Disease-Associated lncRNAs.

Authors:  Ping Xuan; Lan Jia; Tiangang Zhang; Nan Sheng; Xiaokun Li; Jinbao Li
Journal:  Int J Mol Sci       Date:  2019-09-10       Impact factor: 5.923

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