| Literature DB >> 35066774 |
Nina Krüger1,2, Alexander Meyer3,4, Lennart Tautz5, Markus Hüllebrand6,5, Isaac Wamala6,3, Marius Pullig6, Markus Kofler3,4, Jörg Kempfert6,3,4, Simon Sündermann6,3,4, Volkmar Falk6,3,4,7,8, Anja Hennemuth6,3,4,5.
Abstract
PURPOSE: Careful assessment of the aortic root is paramount to select an appropriate prosthesis for transcatheter aortic valve implantation (TAVI). Relevant information about the aortic root anatomy, such as the aortic annulus diameter, can be extracted from pre-interventional CT. In this work, we investigate a neural network-based approach for segmenting the aortic root as a basis for obtaining these parameters.Entities:
Keywords: CNN; CT; Deep learning; Image analysis; TAVI; U-Net
Mesh:
Year: 2022 PMID: 35066774 PMCID: PMC8873075 DOI: 10.1007/s11548-021-02554-3
Source DB: PubMed Journal: Int J Comput Assist Radiol Surg ISSN: 1861-6410 Impact factor: 2.924
Fig. 1The aortic root comprises the whole aortic valve between the transition to the ascending aorta and the annulus at the base of the aortic valve cusps, which are attached to the LVOT
Fig. 2The blue bounding box contains the complete TAVI planning CT scan. The preprocessing for the aortic root detection crops this volume to the yellow region of mm centered at a point 128 mm above the image center (in HEAD direction, according to the DICOM information). The subimage in the red bounding box contains the aortic root. The first task in this work is the automatic extraction of this subimage
Fig. 3Processing steps: 1. The region of interest (ROI) is extracted from the thorax CT scan. 2. The aorta is segmented in this ROI. 3. The annulus region is segmented. The annulus plane is inferred by principal component analysis, and the annulus diameter is approximated
Statistics: patient sex (F female, M male, U unknown); age, BMI and aortic valve calcification (mean ± standard deviation) for training, test and device sizing data set
| Training (90 cases) | Test (36 cases) | Sizing (640 cases) | |
|---|---|---|---|
| Sex | 60 F, 30 M | 12 F, 18 M, 6 U | 317 F, 323 M |
| Mean age | 80.4 ± 10.2 | 80.8 ± 5.4 | 78.9 ± 9.4 |
| Mean BMI [kg/m | 27.8 ± 6.2 | 25.5 ± 5.1 | 28.1 ± 15.7 |
| AV calcification [mm | 240 ± 212 | 165 ± 288 | 205 ± 203 |
The volume of calcification was assessed within the aortic valve by thresholding the CT scan at a Hounsfield unit of 850
Fig. 4The available expert annotations consist of a mask of the aortic lumen, the centerline of aorta and LVOT, cross-sectional contours of the aortic root and LVOT and manually placed hinge point markers
Fig. 5Our CNN architecture inspired by the U-Net: It consists of a contracting and an expansive path
Fig. 6Example images acquired with different scanners. The relative intensity difference in the ROI (yellow circle) is reduced through the suggested intensity normalization. The lines mark the mean value within the ROI
Fig. 7The labels for the training of the ROI segmentation are generated based on the aortic valve hinge points via the calculation of an axis-aligned enclosing bounding box. The labels for the ensuing aorta segmentation in step 2 are based on the aortic lumen, while the region around the annulus plane is defined by the cross-sectional contours of the aortic root and LVOT
Fig. 8Segmentation mask (yellow), aligned along the annulus plane, defined by the hinge points (black) with the aorta segmentation (red) for reference
Fig. 9Principal component analysis applied to the segmentation mask (yellow): The first two principal components maximize the variance of the underlying data while being perpendicular to each other. A plane results from the normal vector orthogonal to the two principal components. The plane’s midpoint is defined by the center of gravity of the underlying data
Fig. 10Calculation of the annulus plane orientation by principal component analysis can be distorted by a segmentation that has a comparable height and diameter; the minimal and maximal diameter should exceed the height to ensure correct calculation of the plane’s normal vector
Fig. 111. The segmentation of the annulus region is masked with the contours of the predicted aorta segmentation from step 2. 2. The resulting segmentation is used as input to the PCA for the calculation of the valve plane orientation
Step 1: Mean intersection over ground truth for one model trained with each loss function, the selected four highlighted in italics
| Model ( | Training (75 patients) | Validation (15 patients) |
|---|---|---|
| Binary cross-entropy | 0.963 | 0.923 |
| Focal | 0.931 | 0.912 |
| Tversky (0.75) | 0.970 | 0.929 |
| Tversky (0.85) | 0.973 | 0.909 |
| Focal Tversky (0.60) | 0.954 | 0.925 |
| Focal Tversky (0.70) | 0.961 | 0.918 |
| Focal Tversky (0.80) | 0.969 | 0.927 |
| Focal Tversky (0.95) | 0.958 | 0.914 |
Step 1: Mean intersection over ground truth for each loss function in sixfold cross-validation and the final model as average of these models
| Model ( | Training (90 patients) | Test (36 patients) |
|---|---|---|
| Tversky (0.80) | 0.951 | 0.936 |
| Focal Tversky (0.65) | 0.957 | 0.937 |
| Focal Tversky (0.85) | 0.954 | 0.938 |
| Focal Tversky (0.90) | 0.943 | 0.932 |
| Final model | 0.957 | 0.938 |
Step 2: Mean F1 score with the individual loss functions, the selected four highlighted in italics
| Model ( | Training (75 patients) | Validation (15 patients) |
|---|---|---|
| Binary cross-entropy | 0.943 | 0.935 |
| Focal | 0.922 | 0.920 |
| Tversky (0.45) | 0.925 | 0.913 |
| Tversky (0.55) | 0.933 | 0.926 |
| Focal Tversky (0.50) | 0.928 | 0.917 |
| Focal Tversky (0.60) | 0.942 | 0.927 |
| Focal Tversky (0.75) | 0.938 | 0.932 |
Step 2: Mean F1 score for each loss function in sixfold cross-validation and the final model
| Model ( | Training (90 patients) | Test (36 patients) |
|---|---|---|
| Tversky (0.50) | 0.942 | 0.939 |
| Focal Tversky (0.55) | 0.945 | 0.936 |
| Focal Tversky (0.65) | 0.944 | 0.937 |
| Focal Tversky (0.70) | 0.944 | 0.940 |
| Final model | 0.945 | 0.940 |
Step 3: Mean error in mm with the individual loss functions, the selected four highlighted in italics
| Model ( | Training (75 patients) | Validation (15 patients) |
|---|---|---|
| Binary cross-entropy | 2.95 | 2.63 |
| Focal | 3.30 | 3.48 |
| Tversky (0.50) | 3.17 | 3.71 |
| Tversky (0.60) | 2.60 | 2.70 |
| Tversky (0.80) | 2.69 | 2.76 |
| Tversky (0.95) | 2.18 | 2.82 |
| Focal Tversky (0.75) | 2.96 | 3.01 |
| Focal Tversky (0.85) | 2.01 | 2.64 |
Step 3: Mean minimal diameter ± standard deviation [minimal value, maximal value] (median)
| Training (90 patients) | Test (36 patients) | |
|---|---|---|
| Model | ||
| From annotation | ||
| Error |
All values are given in mm
Step 3: Mean minimal diameter ± standard deviation in mm grouped by CT scanner manufacturer
| Siemens | Toshiba | GE | Philips | |
|---|---|---|---|---|
| Error |
Step 3: Implant size suggestion versus actually implanted size in %
| Training (90 cases) | Test (36 cases) | Sizing (640 cases) | |
|---|---|---|---|
| > 2 sizes smaller | 1 | 0 | 3 |
| 2 sizes smaller | 1 | 7 | 6 |
| 1 size smaller | 14 | 25 | 17 |
| 1 size bigger | 1 | 6 | 5 |
| 2 sizes bigger | 1 | 3 | |
| 1 | 0 | 2 |
Fig. 12Possible error sources: a difference between the annotations (green) and the model (red) in detected plane orientation (lines), aorta and valve segmentation (silhouettes) and segmentation around the annulus plane (solid); in this example, this leads to a difference in the diameter obtained from the model and the annotations of 5.91 mm