Literature DB >> 35059941

Turbo prediction: a new approach for bioactivity prediction.

Ammar Abdo1,2, Maude Pupin3.   

Abstract

Nowadays, activity prediction is key to understanding the mechanism-of-action of active structures discovered from phenotypic screening or found in natural products. Machine learning is currently one of the most important and rapidly evolving topics in computer-aided drug discovery to identify and design new drugs with superior biological activities. The performance of a predictive machine learning model can be enhanced through the optimal selection of learning data, algorithm, algorithm parameters, and ensemble methods. In this article, we focus on how to enhance the prediction model using the learning data. However, get an option to add more and accurate data is not easy and available in many cases. This motivated us to propose the turbo prediction model, in which nearest neighbour structures are used to increase prediction accuracy. Five datasets, well known in the literature, were used in this article and experimental results show that turbo prediction can improve the quality prediction of the conventional prediction models, particularly for heterogeneous datasets, without any additional effort on the part of the user carrying out the prediction process, and at a minimal computational cost.
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Drug discovery; Machine learning; Similarity-based classification; Target prediction; Virtual screening

Mesh:

Year:  2022        PMID: 35059941     DOI: 10.1007/s10822-021-00440-3

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  32 in total

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Review 5.  Current trends in ligand-based virtual screening: molecular representations, data mining methods, new application areas, and performance evaluation.

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6.  Drug discovery: Predicting promiscuity.

Authors:  Andrew L Hopkins
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7.  Review and comparative assessment of similarity-based methods for prediction of drug-protein interactions in the druggable human proteome.

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Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

8.  Cancer Immunotherapy and Immunomodulation.

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Journal:  Curr Med Chem       Date:  2019       Impact factor: 4.530

Review 9.  Machine learning in chemoinformatics and drug discovery.

Authors:  Yu-Chen Lo; Stefano E Rensi; Wen Torng; Russ B Altman
Journal:  Drug Discov Today       Date:  2018-05-08       Impact factor: 7.851

10.  The Role of Atypical Cannabinoid Ligands O-1602 and O-1918 on Skeletal Muscle Homeostasis with a Focus on Obesity.

Authors:  Anna C Simcocks; Lannie O'Keefe; Kayte A Jenkin; Lauren M Cornall; Esther Grinfeld; Michael L Mathai; Deanne H Hryciw; Andrew J McAinch
Journal:  Int J Mol Sci       Date:  2020-08-18       Impact factor: 5.923

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  1 in total

1.  Application of random forest based on semi-automatic parameter adjustment for optimization of anti-breast cancer drugs.

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  1 in total

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