| Literature DB >> 35056843 |
Todor Dudev1, Diana Cheshmedzhieva1, Peter Dorkov2, Ivayla Pantcheva3.
Abstract
The affinity of the polyether ionophore salinomycin to bind IA/IB metal ions was accessed using the Gibbs free energy of the competition reaction between SalNa (taken as a reference) and its rival ions: [M+-solution] + [SalNa] → [SalM] + [Na+-solution] (M = Li, K, Rb, Cs, Cu, Ag, Au). The DFT/PCM computations revealed that the ionic radius, charge density and accepting ability of the competing metal cations, as well as the dielectric properties of the solvent, have an influence upon the selectivity of salinomycin. The optimized structures of the monovalent metal complexes demonstrate the flexibility of the ionophore, allowing the coordination of one or two water ligands in SalM-W1 and SalM-W2, respectively. The metal cations are responsible for the inner coordination sphere geometry, with coordination numbers spread between 2 (Au+), 4 (Li+ and Cu+), 5/6 (Na+, K+, Ag+), 6/7 (Rb+) and 7/8 (Cs+). The metals' affinity to salinomycin in low-polarity media follows the order of Li+ > Cu+ > Na+ > K+ > Au+ > Ag+ > Rb+ > Cs+, whereas some derangement takes place in high-dielectric environment: Li+ ≥ Na+ > K+ > Cu+ > Au+ > Ag+ > Rb+ > Cs+.Entities:
Keywords: DFT/PCM; IA/IB metal ions; monovalent metal complex; salinomycin
Mesh:
Substances:
Year: 2022 PMID: 35056843 PMCID: PMC8779476 DOI: 10.3390/molecules27020532
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Chemical structure of salinomycinic acid with the numbering sequence of oxygen atoms.
Figure 1Crystal structure of sodium salinomycinate (SalNa) containing (a) one and (b) two water ligands [31]. Color scheme: C—grey, O—red, Na—purple (hydrogens are omitted for clarity).
Figure 2B3LYP/6-31+G(d,p) fully optimized structures of salinomycin complexes with Li+, Na+, K+, Rb+ and Cs+ cations, containing one (W1) water molecule. Color scheme: C—green, O—red, H—light grey, Li—magenta, Na—purple, K—blue, Rb—yellow, Cs—deep olive (carbon hydrogens are omitted for clarity).
Figure 3B3LYP/6-31+G(d,p) fully optimized structures of salinomycin complexes with Li+, Na+, K+, Rb+, and Cs+ cations, containing two (W2) water molecules. Color scheme: C—green, O—red, H—light grey, Li—magenta, Na—purple, K—blue, Rb—yellow, Cs—deep olive (carbon hydrogens are omitted for clarity).
Figure 4B3LYP/6-31+G(d,p) fully optimized structures of salinomycin complexes with Cu+, Ag+, and Au+, containing (a) one (W1) and (b) two (W2) water molecules. Color scheme: C—green, O—red, H—light grey, Cu—orange, Ag—light blue, Au—gray (carbon hydrogens are omitted for clarity).
Structural and thermodynamic characteristics of alkali and coinage metal cations.
| Cation | Ionic Radius (r, Å) [ | Charge Density 2 | Lewis Acidity | Charge Transfer to the Metal 3 (e) |
|---|---|---|---|---|
| Li+ | 0.59 (IV) | 1.16 | 0.215 | 0.286/0.260 |
| Na+ | 1.00/1.02 (V/VI) | 0.24/0.22 | 0.159 | 0.215/0.198 |
| K+ | 1.38 (VI) | 0.09 | 0.108 | 0.166/0.152 |
| Rb+ | 1.52/1.56 (VI/VII) | 0.07/0.06 | 0.099 | 0.142/0.132 |
| Cs+ | -/1.74 (VII/VIII) | -/0.04 | 0.084 | 0.129/0.119 |
| Cu+ | 0.60 (IV) | 1.10 | 0.400 | 0.360/0.338 |
| Ag+ | 1.09/1.15 (V/VI) | 0.18/0.16 | 0.191 | 0.300/0.281 |
| Au+ | -/1.37 (II/VI) | -/0.09 | - | 0.412/0.381 |
1 The respective coordination number(s) of the metal is/are given in parentheses; 2 Charge density = Ion charge/Ion volume = 1/(4/3 π r3); 3 Charge transfer from CH3OCH3 (model for an ether group) and CH3OH (model for a hydroxyl group) evaluated at B3LYP/6-31+G(d,p) level [35].
Gibbs free energies of M+/Na+ metal substitution (ΔGε, kcal/mol) for Equation (1), evaluated in media with different dielectric constant ε.
| Reaction | ΔGε | Reaction | ΔGε |
|---|---|---|---|
| [Li+-solution] + [SalNa-W1] → [SalLi-W1] + [Na+-solution] | ΔG1 = −21.6 | [Li+-solution] + [SalNa-W2] → [SalLi-W2] + [Na+-solution] | ΔG1 = −24.0 |
| [K+-solution] + [SalNa-W1] → [SalK-W1] + [Na+-solution] | ΔG1 = 19.8 | [K+-solution] + [SalNa-W2] → [SalK-W2] + [Na+-solution] | ΔG1 = 20.6 |
| [Rb+-solution] + [SalNa-W1] → [SalRb-W1] + [Na+-solution] | ΔG1 = 58.2 | [Rb+-solution] + [SalNa-W2] → [SalRb-W2] + [Na+-solution] | ΔG1 = 56.1 |
| [Cs+-solution] + [SalNa-W1] → [SalCs-W1] + [Na+-solution] | ΔG1 = 71.2 | [Cs+-solution] + [SalNa-W2] → [SalCs-W2] + [Na+-solution] | ΔG1 = 67.3 |
| [Cu+-solution] + [SalNa-W1] → [SalCu-W1] + [Na+-solution] | ΔG1 = −34.2 | [Cu+-solution] + [SalNa-W2] → [SalCu-W2] + [Na+-solution] | ΔG1 = −31.6 |
| [Ag+-solution] + [SalNa-W1] → [SalAg-W1] + [Na+-solution] | ΔG1 = 15.8 | [Ag+-solution] + [SalNa-W2] → [SalAg-W2] + [Na+-solution] | ΔG1 = 16.0 |
| [Au+-solution] + [SalNa-W1] → [SalAu-W1] + [Na+-solution] | ΔG1 = 5.2 | [Au+-solution] + [SalNa-W2] → [SalAu-W2] + [Na+-solution] | ΔG1 = 0.7 |
Atom charges after the charge transfer (CT) from ligands to the metal cation in salinomycin complexes with one water molecule from Hirshfeld, CM5 and NBO population analyses (in e).
| Ion | qhirsh | qCM5 | qNBO |
|---|---|---|---|
| Li+ | 0.1746 | 0.5007 | 0.8892 |
| Na+ | 0.2600 | 0.6675 | 0.8993 |
| K+ | 0.2773 | 0.7816 | 0.9112 |
| Rb+ | 0.3023 | 0.8319 | 0.9284 |
| Cs+ | 0.3293 | 0.9555 | 0.9454 |
| Cu+ | 0.2780 | 0.4605 | 0.7379 |
| Ag+ | 0.3224 | 0.4651 | 0.6711 |
| Au+ | 0.2805 | 0.4202 | 0.5418 |
Atom charges after the charge transfer (CT) from ligands to the metal cation in salinomycin complexes with two water molecules from Hirshfeld, CM5 and NBO population analyses (in e).
| Ion | qhirsh | qCM5 | qNBO |
|---|---|---|---|
| Li+ | 0.1725 | 0.5074 | 0.9005 |
| Na+ | 0.2474 | 0.6128 | 0.9121 |
| K+ | 0.2797 | 0.7392 | 0.9277 |
| Rb+ | 0.3263 | 0.7472 | 0.9395 |
| Cs+ | 0.3546 | 0.8293 | 0.9519 |
| Cu+ | 0.2411 | 0.4046 | 0.6690 |
| Ag+ | 0.3182 | 0.4450 | 0.6687 |
| Au+ | 0.2562 | 0.3946 | 0.4588 |
Gibbs free energies of solvation evaluated from PCM calculations for salinomycin complexes containing one water molecule in solvents with different dielectric constants (in kcal/mol).
| SalM-W1 | ΔGsolv | |||
|---|---|---|---|---|
| Cyclohexane | Diethylether | Methanol | Water | |
| Li | −19.97 | −27.48 | −39.73 | −24.86 |
| Na | −19.10 | −26.06 | −37.70 | −22.72 |
| K | −18.49 | −25.17 | −36.98 | −22.24 |
| Rb | −19.29 | −26.42 | −40.78 | −26.00 |
| Cs | −19.42 | −26.75 | −40.97 | −26.20 |
| Cu | −19.73 | −27.12 | −44.50 | −20.88 |
| Ag | −19.49 | −26.74 | −39.99 | −25.21 |
| Au | −19.82 | −27.36 | −42.13 | −27.63 |
ΔGsolv = Esolvent − Egas-phase.
Gibbs free energies of solvation evaluated from PCM calculations for salinomycin complexes containing two water molecules in solvents with different dielectric constants (in kcal/mol).
| SalM-W2 | ΔGsolv | |||
|---|---|---|---|---|
| Cyclohexane | Diethylether | Methanol | Water | |
| Li | −20.50 | −28.79 | −45.65 | −30.76 |
| Na | −19.23 | −26.52 | −43.59 | −27.90 |
| K | −19.31 | −26.91 | −43.83 | −28.26 |
| Rb | −20.05 | −28.07 | −46.11 | −31.25 |
| Cs | −20.17 | −28.27 | −45.98 | −31.21 |
| Cu | −19.53 | −27.17 | −50.19 | −35.30 |
| Ag | −19.51 | −27.09 | −45.93 | −30.65 |
| Au | −20.50 | −29.01 | −48.56 | −34.44 |
ΔGsolv = Esolvent − Egas-phase.