| Literature DB >> 35056662 |
Asim Najmi1, Sadique A Javed1, Mohammed Al Bratty1, Hassan A Alhazmi1,2.
Abstract
Natural products represents an important source of new lead compounds in drug discovery research. Several drugs currently used as therapeutic agents have been developed from natural sources; plant sources are specifically important. In the past few decades, pharmaceutical companies demonstrated insignificant attention towards natural product drug discovery, mainly due to its intrinsic complexity. Recently, technological advancements greatly helped to address the challenges and resulted in the revived scientific interest in drug discovery from natural sources. This review provides a comprehensive overview of various approaches used in the selection, authentication, extraction/isolation, biological screening, and analogue development through the application of modern drug-development principles of plant-based natural products. Main focus is given to the bioactivity-guided fractionation approach along with associated challenges and major advancements. A brief outline of historical development in natural product drug discovery and a snapshot of the prominent natural drugs developed in the last few decades are also presented. The researcher's opinions indicated that an integrated interdisciplinary approach utilizing technological advances is necessary for the successful development of natural products. These involve the application of efficient selection method, well-designed extraction/isolation procedure, advanced structure elucidation techniques, and bioassays with a high-throughput capacity to establish druggability and patentability of phyto-compounds. A number of modern approaches including molecular modeling, virtual screening, natural product library, and database mining are being used for improving natural product drug discovery research. Renewed scientific interest and recent research trends in natural product drug discovery clearly indicated that natural products will play important role in the future development of new therapeutic drugs and it is also anticipated that efficient application of new approaches will further improve the drug discovery campaign.Entities:
Keywords: bioactivity-guided; drug discovery; ethnopharmacological; extraction; isolation; plant-based natural products
Mesh:
Substances:
Year: 2022 PMID: 35056662 PMCID: PMC8779633 DOI: 10.3390/molecules27020349
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Important natural products derived from plant and microbial sources in the last few decades with their therapeutic indications and probable mechanism of actions.
| Name of the Natural Compound | Botanical Source | Chemical Structure | Therapeutic Indication/Activities | Mechanism of Action | References |
|---|---|---|---|---|---|
| Drugs Derived from Plant Sources | |||||
| Arglabin |
|
| Anti-tumor | Inhibition of farnesyl transferase | [ |
| Artemisinin |
| Treatment of malaria | Free radical formation that alkylate essential malarial proteins | [ | |
| Cannabidiol |
| Anti-epileptic, anxiolytic, antipsychotic, and anticancer | Modulation of CB1, CB2, 5HT1A receptors in the CNS | [ | |
| Capsaicin |
| Chronic pain syndromes such as postherpetic neuralgia and musculoskeletal pain | Activates Transient receptor potential vanilloid 1 (TRPV1) in sensory nerves | [ | |
| Colchicine |
| Gout | Prevents microtubule assembly and hence modulate multiple pro- and anti-inflammatory pathways | [ | |
| Curcumin |
| Antioxidant, anti-inflammatory, arthritis, metabolic syndrome and pain | Inhibition of NF-kB; scavenge reactive oxygen and nitrogen species; modulates the activities of GSH, catalase and SOD | [ | |
| Epigallocatechin-3- |
| Anti-viral against a diverse family of DNA and RNA viruses; antibacterial and antifungal activities. Anticancer, anti-inflammatory and anti-diabetic activities | Alter or damage viral particle, primary target is viral membrane; disruption of lipid layer in bacterial cell wall; inhibits dihydrofolate reductase. Modulation of ROS production and inhibition of NF-kB signaling responsible for anticancer activity | [ | |
| Galantamine |
| Dementia associated with Alzheimer’s disease | Reversible acetylcholinesterase inhibitor; modulation nicotinic acetylcholine receptor (nAChRs) | [ | |
| Genistein |
| Anticancer, Alzheimer’s disease | Protein-tyrosine kinase inhibition, induction of apoptosis, cell cycle arrest, antimetastatic and antiangiogenic activity, antioxidant | [ | |
| Gossypol |
| Anti-infertility/male contraceptive, Anticancer, antiviral, antimicrobial, antioxidant activities | Inhibit sperm production and motility; Bcl-2 inhibition; DNA polymerase and topoisomerase II inhibition; induce apoptosis | [ | |
| Ingenol mebutate |
| Actinic keratosis | Dual mechanism, Inducer of cell death necrosis and local pro-inflammatory response | [ | |
| β-Lapachone |
| Variety of cancers, especially solid tumors, anti- | Anticancer activity through formation of ROS in NQO1-positive cells, topoisomerase inhibition, mTOR pathway modulator | [ | |
| Masoprocol |
|
| Antineoplastic agent used in cancer chemotherapy | 5-Lipoxygenase inhibition | [ |
| Omacetaxine mepesuccinate (Homoharringtonine) |
| Anticancer agent; mainly chronic myeloid leukemia (CML) | Protein synthesis inhibition | [ | |
| Paclitaxel |
| Cancer chemotherapy | Mitotic inhibitor | [ | |
| Podophyllotoxin |
| Antitumor | Polymerization of tubulin resulting in cell cycle arrest and suppress the formation of mitotic spindles microtubules | [ | |
| Quercetin |
| Antioxidant, anti-inflammatory, anticancer, cardiovascular protection; Alzheimer’s disease; anti-ulcer; antimicrobial; antiallergic | Inhibits cyclooxygenase and lipoxygenase; inhibits platelet aggregation; inhibit gastric secretion and lipid peroxidation; ROS generation and MicroRNA 21 elevation | [ | |
| Resveratrol |
| Chemopreventive and chemotherapeutic in different types of cancer. Also used as antidiabetic, in cardiovascular complications, metabolic syndromes, antioxidant. | Modulation of multiple molecular pathways involved in cancer and xenobiotic metabolism; reduce oxidative stress and inflammation; cell proliferation arrest; induce apoptosis | [ | |
| Drugs Derived from Microbial Sources | |||||
| Teixobactin |
| N-[N-Methyl-D-Phe-Ile-Ser-D-Gln-D-alle-Ile-Ser-]cyclo[D-Thr-Ala-[3-(2-iminoimid-azolidine-4 beta-yl)-Ala-]Ile-] | Antibacterial agent active against various gram-positive bacterial including vacomycin resistant enterococci and methicillin-resistant | Inhibition of bacterial cell-wall sybthesis by binging to the synthesis building blocks lipid-II and lipid-III | [ |
| Lodopyridone |
| Anticancer | Cytotoxic to HCT-116 human colon cancer cells | [ | |
| Salinosporamide A |
|
| Anticancer | Inhibition of 20S Proteasome | [ |
| Platensimycin |
|
| Antibiotic, active against various Gram-positive bacteria including resistant strains | Inhibition of fatty acid synthesis in cell membrane through inhibition of β-ketoacy synthases I/II (FabF/B) | [ |
| Platencin |
|
| Antibiotic, active against various Gram-positive bacteria including resistant strains | Inhibition of fatty acid synthesis in cell membrane through inhibition of β-ketoacy synthases I/II (FabF/B) | [ |
| Cryptophycin | Cyanobacteria |
| Anticancer | Inhibiotion of cell division by depletion of microtubule through interaction with tubulin | [ |
| Daptomycin |
| - | Systemic and life-threatening infection caused Gram-positive bacteria | Disruption of bacterial cell-membrane function | [ |
| Retapamulin |
|
| Antibacterial used to treat topical skin infection impetigo | Inhibition of bacterial protein synthesis by binding to 50s ribosome | [ |
Figure 1The major processes involved in the discovery and development of natural products from botanical sources.
Ethnopharmacological/traditional approach versus random screening approach of plant selection.
| Ethnopharmacological/Traditional Approach | Random Selection Approach | |
|---|---|---|
| Characteristics |
Traditional or ethnopharmacological knowledge/application is the basis for plant candidate selection and pharmacological assay. It involves the observation, description and experimental analysis of traditionally used plant materials. The The ethnopharmacological knowledge is easily accessible. |
Plant candidates for natural product discovery are randomly selected, mainly based on their availability. |
| Strengths |
Comparatively higher success rate. Based on scientific disciplines including chemistry, botany, pharmacology, biochemistry, history, anthropology et. |
Extremely advantageous, when plant species from a region of high biodiversity has to be screened. The selected samples has the potential of identification of unexpected biological activities and novel structures. Can be applied for both general and focused pharmacological screening. |
| Weaknesses/Challenges |
Permits are needed for the collection and investigation of plant candidate; even may provoke legal-issues with the ethical groups or the country in which the traditional knowledge was originated, Traditional systems such as Ayurveda and TCM use multicomponent mixtures as formulation and the identification of active constituents out of these mixtures are complicated due to complexity and synergistic effects The concept of health and disease in traditional medicine widely deviate the modern concepts. For example TCM is highly influenced by Chinese philosophy. This may complicate the correct interpretation of the ethnopharmacological information. Holistic and personalized approaches of these systems are difficult to access by current bioassay methods. |
Lower rate of success in comparison to ethnophramcological approach. Flawed in the sense that there is no idea of bioactivity. The pharmacololgical screening used for randomly selected samples are of small or medium throughput and the test samples (extracts, fractions or pure constituents) availability is low limiting the number of bioassays that can be done. |
| Examples |
Galegine isolated from | 35,000 plant species screened through random selection between 1960 to 1980 leading to discovery of paclitaxel and camptothecin [ |
Figure 2An outline of parallel approach for biological activity guided fractionation of plant extracts.
Figure 3An outline of sequential approach for biological activity guided fractionation of plant extract.
Figure 4An outline for structural elucidation of new phytochemicals.
Strengths and weaknesses of various biological screening models used for natural products.
| Screening Models | Strengths | Weaknesses |
|---|---|---|
| In-vivo animal models | Physiological similarities to humans; pathophysiological relevance is high; activity on the level of whole organism and transgenic models may be generated. | Require to manage animal facility; need larger amounts of test samples; ethical consideration; low-throughput; may be species related differences. |
| In-vitro cellular target-based assays | Known molecular target; no need to determine the mechanism of action separately; efficacy of hits at cellular level, high-throughput | Observed efficacy may not be a result of the mechanism originally expected because a drug generally bind at more than one target; may not be able to reflect whole mechanism of the hits; no assurance for in-vivo efficacy; requirement of cell culture facility |
| In-vitro phenotype cell-based assays | Potential to discover new molecular target; medium to high-throughput; efficacy of hits at cellular level | No assurance for in-vivo efficacy; requirement of cell culture facility; identification of molecular target may need great effort; possibility of poor structure activity relationship of hits in the optimization phase |
| In-vitro assays with isolated proteins | No animal or cell culture facilities required; high-throughput screening | Hits may be unable to reach the target for interaction into cells or in-vivo (hits with low bioavailability) |
| In-situ/ex-vivo isolated tissues or organs | Higher-throughput than animal models; good pathophysiological relevance | Lower-throughput than cell-based bioassays; ethical consideration; short life of isolated tissues and organs |
Figure 5The overall approaches in modern drug discovery and development process from botanical sources.