| Literature DB >> 35054236 |
Philippe Germain1, Armine Vardazaryan2,3, Nicolas Padoy2,3, Aissam Labani1, Catherine Roy1, Thomas Hellmut Schindler4, Soraya El Ghannudi1,5.
Abstract
BACKGROUND: Diagnosing cardiac amyloidosis (CA) from cine-CMR (cardiac magnetic resonance) alone is not reliable. In this study, we tested if a convolutional neural network (CNN) could outperform the visual diagnosis of experienced operators.Entities:
Keywords: AL/TTR amyloidosis; cardiac amyloidosis; convolutional neural network; deep learning; hypertrophic cardiomyopathy; left ventricular hypertrophy
Year: 2021 PMID: 35054236 PMCID: PMC8774777 DOI: 10.3390/diagnostics12010069
Source DB: PubMed Journal: Diagnostics (Basel) ISSN: 2075-4418
Clinical and CMR characteristics of the study population.
| Amyloidosis | LVH |
| |
|---|---|---|---|
| N patients | 119 | 122 | |
| Age (years) | 74.65 ± 9.53 | 59.50 ± 14.34 | 0.0001 |
| Sex (F/M) | 31/88 | 39/83 | 0.31 |
| Weight (kg) | 70.80 ± 15.16 | 82.95 ± 20.50 | 0.0001 |
| Height (m) | 169.9 ± 8.84 | 170.36 ± 10.05 | 0.78 |
| BSA (m2) | 1.84 ± 0.22 | 2.00 ± 0.27 | <0.0001 |
| IVS (mm) | 18.11 ± 3.54 | 18.38 ± 3.54 | 0.56 |
| LVMI (g/m2) | 115.96 ± 29.08 | 116.58 ± 31.43 | 0.88 |
| LVDVI (mL/m2) | 69.88 ± 22.21 | 74.51 ± 20.82 | 0.36 |
| LVEF (%) | 58.96 ± 10.93 | 67.33 ± 12.18 | <0.0001 |
| LA surface (cm2) | 31.55 ± 5.23 | 25.47 ± 5.96 | 0.0002 |
| Systolic time (ms) | 321 ± 39 | 332 ± 40 | 0.095 |
| T1 (ms) | 1138.5 ± 48.1 | 1038.0 ± 56.2 | <0.0001 |
| ECV (%) | 53.97 ± 11.17 | 26.89 ± 4.00 | <0.0001 |
| N long axis frames/patient | 2.24 ± 0.93 | 2.22 ± 0.94 | 0.93 |
| N short axis frames/patient | 3.41 ± 1.45 | 3.59 ± 1.27 | 0.49 |
| N frames/patient | 5.68 ± 1.85 | 5.47 ± 1.81 | 0.58 |
| N frame post-gadolinium | 171/676 | 167/667 | 0.96 |
| N patient with pericard. | 54 (45%) | 27 (22%) | 0.00013 |
| N patients with pleural. | 45 (38%) | 10 (8%) | 0.00001 |
| N patients with both. | 24 (20%) | 3 (2.5%) | 0.00001 |
The characteristics of patients with amyloidosis and left ventricular hypertrophy were included in this study. The number of observations, (integer) or average values ± standard deviation, are listed: BSA: body surface area; IVS: interventricular septum thickness; LVMI: left ventricular mass index; LVDVI: left ventricular diastolic volume index; LVEF: left ventricular ejection fraction; LA: left atrial; systolic time: the time of the systolic image; and ECV: extracellular volume. Between the parentheses is the percentage. Pericard. is for pericardial effusion, pleural is for pleural effusion and both is for pericardial + pleural effusions.
Figure 1Example of input shapes submitted to the CNN, with native 256 × 256 full image format (A), 224 × 224 cropped image (B), 160 × 160 cropped image (C), 128 × 128 cropped image (D), epicardial region of interest (ROI) image (E) and myocardial ROI (F).
Figure 2Schematic view of the processing method used in order to strictly separate training/validation data and test data.
Accuracy and AUC of the ROC curve for classification of amyloidosis vs. LVH in the 40% held-out test group, according to the input shape.
| Frame-Based | Patient-Based | |||
|---|---|---|---|---|
| Input Shape | Accuracy | ROC AUC | Accuracy | ROC AUC |
| 160 × 160/D + S | 0.759 | 0.836 | 0.812 | 0.937 |
| 160 × 160/D | 0.760 (ns) | 0.820 (ns) | 0.833 (ns) | 0.918 (ns) |
| 160 × 160/S | 0.733 (ns) | 0.801 (0.04) | 0.833 (ns) | 0.890 (ns) |
| 256 × 256/D + S | 0.710 (ns) | 0.790 (0.03) | 0.771 (ns) | 0.803 (0.02) |
| 224 × 224/D + S | 0.728 (ns) | 0.823 (ns) | 0.812 (ns) | 0.852 (ns) |
| 128 × 128/D + S | 0.740 (ns) | 0.808 (ns) | 0.812 (ns) | 0.922 (ns) |
| Epicardial ROI | 0.722 (ns) | 0.787 (0.01) | 0.791 (ns) | 0.888 (ns) |
| Myocard. ROI | 0.662 (0.05) | 0.719 (0.01) | 0.714 (ns) | 0.814 (0.03) |
Results obtained with the 40% held-out test set after hyperparameters tuning. 160 × 160 indicates the cropping size of input frames. D and S indicate diastole and systole. Between brackets is the confidence interval of AUC. Values between parentheses indicate the level of significance of the difference as compared to the 160 × 160 D + S result (assessed with Chi-square test from the number of observations for accuracy and assessed by Delong test for AUC comparisons).
Accuracy and AUC of the ROC curve for classification of amyloidosis vs. LVH in the held-out test group for human readers vs. CNN.
| Frame-Based | Patient-Based | |||||
|---|---|---|---|---|---|---|
| Metric | Accur. | Sensitiv. | ROC AUC | Accur. | Sensitiv. | ROC AUC |
| CNN | 0.746 | 77.0 | 0.824 | 0.825 | 85.7 | 0.895 |
| Read 1 | 0.585 | 66.4 | 0.570 | 0.629 | 67.4 | 0.654 |
| Read 2 | 0.623 | 69.6 | 0.623 | 0.649 | 69.6 | 0.712 |
| Read 3 | 0.585 | 66.4 | 0.587 | 0.660 | 71.1 | 0.731 |
| Read (avg) | 0.605 | 69.2 | 0.630 | 0.660 | 72.1 | 0.727 |
Frame-based and patient-based results obtained with the held-out test set by human readers and by CNN. Accur. is for accuracy, Sensitiv. and Specific. are for sensitivity and specificity. Values between parentheses indicate the level of significance of the difference between human reader and CNN (assessed with Chi-square test from the number of observations for accuracy and assessed by Delong test for AUC comparisons).
Figure 3ROC curves and AUC for frame-based (A) and patient-based (B) classification of amyloidosis vs. LVH by CNN and by three human readers (Read. 1 to 3).
Figure 4Saliency maps targeting cardiac region (A) but also frequently subcutaneous fat (B), lung (C) or liver (D). Diastolic frames are shown in the upper row and systolic frames in the lower row.