| Literature DB >> 35051095 |
Zhen Dong1,2, Mengting Liu1,2, Xianglin Zou1,2, Wenqing Sun1,2, Xiubin Liu1,3, Jianguo Zeng1,2, Zihui Yang1,2.
Abstract
Based on network pharmacological analysis and molecular docking techniques, the main components of M. cordata for the treatment of bovine relevant active compounds in M. cordata were searched for through previous research bases and literature databases, and then screened to identify candidate compounds based on physicochemical properties, pharmacokinetic parameters, bioavailability, and drug-like criteria. Target genes associated with hoof disease were obtained from the GeneCards database. Compound-target, compound-target-pathway-disease visualization networks, and protein-protein interaction (PPI) networks were constructed by Cytoscape. Gene ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed in R language. Molecular docking analysis was done using AutoDockTools. The visual network analysis showed that four active compounds, sanguinarine, chelerythrine, allocryptopine and protopine, were associated with the 10 target genes/proteins (SRC, MAPK3, MTOR, ESR1, PIK3CA, BCL2L1, JAK2, GSK3B, MAPK1, and AR) obtained from the screen. The enrichment analysis indicated that the cAMP, PI3K-Akt, and ErbB signaling pathways may be key signaling pathways in network pharmacology. The molecular docking results showed that sanguinarine, chelerythrine, allocryptopine, and protopine bound well to MAPK3 and JAK2. A comprehensive bioinformatics-based network topology strategy and molecular docking study has elucidated the multi-component synergistic mechanism of action of M. cordata in the treatment of bovine hoof disease, offering the possibility of developing M. cordata as a new source of drugs for hoof disease treatment.Entities:
Keywords: M. cordata; hoof disease; mechanism of action; molecular docking; network pharmacology
Year: 2021 PMID: 35051095 PMCID: PMC8779036 DOI: 10.3390/vetsci9010011
Source DB: PubMed Journal: Vet Sci ISSN: 2306-7381
Figure 1Chemical structures of the candidate compounds. (A) Sanguinarine; (B) Chelerythrine; (C) Allocryptopine; (D) Protopine.
The results of the absorption, distribution, metabolism, and excretion (ADME) evaluation of candidate compounds.
| Compounds | Molecular Weight | Water-Oil Distribution Factor | Estimated SOLubility (ESOL) Class | Skin Penetration | Drug-Like Properties (Number of Yes/5) | Bioavailability |
|---|---|---|---|---|---|---|
| Sanguinarine (SAN) | 332.33 | 2.88 | Moderately soluble | −5.17 | 5/5 | 0.55 |
| Chelerythrine (CHE) | 348.37 | 3.02 | Moderately soluble | −5.17 | 5/5 | 0.55 |
| Allocryptopine (ALL) | 369.41 | 2.81 | Moderately soluble | −6.48 | 5/5 | 0.55 |
| Protopine (PRO) | 353.37 | 2.67 | Moderately soluble | −6.47 | 5/5 | 0.55 |
Figure 2Venn diagram identifying disease and compound target intersections.
Figure 3Compound−target interaction network diagram (orange square represents plant, blue diamond represents compound, and purple octagon represents target point, BLH: Boluohui; SAN: Sanguinarine, CHE: Chelerythrine, All: Allocryptopine, PRO: Protopine).
Network parameters of the compounds.
| Compounds | Degree | Betweenness |
|---|---|---|
| SAN | 22 | 16,525.8 |
| CHE | 89 | 15,077.4 |
| ALL | 101 | 2489.3 |
| PRO | 41 | 1679.5 |
Figure 4Compound−target−hoe disease network diagram (green diamonds for compounds, red circles for diseases, blue squares for targets).
Figure 5Venn diagram of target genes between compounds and hoof disease-related diseases.
Figure 6Protein−protein interaction network.
Network properties of the top 10 proteins with protein-protein interaction (PPI) network degree values.
| UniProt Entry | Gene Symbol | Protein Name | Degree | Betweenness |
|---|---|---|---|---|
| P12931 | SRC | SRC proto-oncogene, non-receptor tyrosine kinase | 49 | 712.8 |
| P27361 | MAPK3 | mitogen-activated protein kinase 3 | 47 | 620.4 |
| P42345 | MTOR | mechanistic target of rapamycin kinase | 44 | 478.5 |
| P03372 | ESR1 | Estrogen receptor | 39 | 459.0 |
| P42336 | PIK3CA | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform | 37 | 203.3 |
| Q07817 | BCL2L1 | Bcl-2-like protein 1 | 36 | 266.0 |
| P28482 | MAPK1 | Mitogen-activated protein kinase 1 | 33 | 169.5 |
| P49841 | GSK3B | Glycogen synthase kinase-3 beta | 33 | 438.6 |
| O60674 | JAK2 | Tyrosine-protein kinase JAK2 | 33 | 154.9 |
| P10275 | AR | Androgen receptor | 32 | 271.3 |
| Q96EB6 | SIRT1 | NAD-dependent protein deacetylase sirtuin-1 | 32 | 419.3 |
Figure 7Gene Ontology (GO) enrichment analysis of the targets. (BP: biological processes, CC: cellular components, MF: molecular functions).
Figure 8KEGG pathway enrichment analysis of the targets.
Figure 9Compound−target−pathway−disease interaction visualization network.
Molecular docking parameters.
| Combination of Energy (kcal/mol) | Number of Hydrogen Bonds | |
|---|---|---|
| SAN-MAPK3 | −6.98 | 3 |
| CHE-MAPK3 | −7.50 | 3 |
| ALL-MAPK3 | −8.62 | 2 |
| PRO-JAK2 | −6.58 | 2 |
Figure 10Molecular docking results: (a) SAN and MAPK3; (b) CHE and MAPK3; (c) ALL and MAPK3; (d) PRO and JAK2.