| Literature DB >> 35049888 |
Wen-Zhuo Zhu1, Shu-Heng Wang1, Hui-Min Gao1, Ya-Ming Ge2, Jun Dai3, Xiao-Ling Zhang1,4, Qiao Yang1,4,5.
Abstract
Strain NJES-13T is the type strain and currently the only species of the newly established actinobacteria genera Aptenodytes in the family Dermatophilaceae isolated from the gut microbiota of the Antarctic emperor penguin. This strain demonstrated excellent bioflocculation activity with bacteria-derived exopolysaccharides (EPSs). Moreover, it produced bioactive angucycline/angucyclinone derivatives (ADs) and contained one type III polyketide synthase (T3PKS), thus demonstrating great potential to produce novel bioactive compounds. However, the low productivity of the potential new AD metabolite was the main obstacle for its chemical structure elucidation. In this study, to increase the concentration of targeted metabolites, the influence of cellular morphology on AD metabolism in strain NJES-13T was determined using glass bead-enhanced fermentation. Based on the cellular ultra-structural observation driven by bacterial EPSs, and quantitative analysis of the targeted metabolites, the successful increasing of the productivity of three AD metabolites was achieved. Afterward, a new frigocyclinone analogue was isolated and then identified as 2-hydroxy-frigocyclinone, as well as two other known ADs named 2-hydroxy-tetrangomycin (2-HT) and gephyromycin (GPM). Three AD metabolites were found to demonstrate different bioactivities. Both C-2 hydroxyl substitutes, 2-hydroxy-tetrangomycin and 2-hydroxy-frigocyclinone, exhibited variable inhibitory activities against Staphylococcus aureus, Bacillus subtilis and Candida albicans. Moreover, the newly identified 2-hydroxy-frigocyclinone also showed significant cytotoxicity against three tested human-derived cancerous cell lines (HL-60, Bel-7402 and A549), with all obtained IC50 values less than 10 µM. Based on the genetic analysis after genomic mining, the plausible biogenetic pathway of the three bioactive ADs in strain NJES-13T was also proposed.Entities:
Keywords: Antarctic actinobacteria; Gephyromycinifex aptenodytis; angucycline/angucyclinone derivatives; biogenetic pathway; exopolysaccharides; gut microbiota; type III PKS
Mesh:
Substances:
Year: 2021 PMID: 35049888 PMCID: PMC8779670 DOI: 10.3390/md20010034
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Cellular morphological characteristics of strain NJES-13T after 10 days cultivation at 28 °C in R2A broth. Transmission electron microscopy (TEM) observation showed the coccoid- shaped cells with clusters surrounded by a slimy outermost extracellular layer composed of bacteria-derived exopolysaccharides (EPSs) [black arrows in (A,B)] and the cell aggregation (green arrows in (A). Scanning electron microscopy (SEM) observation revealed that the cell clusters were interconnected by viscous EPSs and showed a dimensional 3D net-like morphology [red arrow in (C)], and the partly interrupted and separated cells [yellow arrow in (D)] after applying the glass bead-enhanced cultivation were also observed. Bar, 1 μm for (A,B) and 3 μm for (C,D).
Figure 2The relative concentrations (con., %) of the three angucycline/angucyclinone derivative (AD) metabolites, namely, (A) gephyromycin (GPM), (B) 2-hydroxy-tetrangomycin (2-HT) and (C) 2-hydroxy-frigocyclinone (2-HF), and (D) the glucose and dry cell weight (DCW) of a 10-day-long cultivation time for flask fermentation of strain NJES-13T with (solid line with circle) and without (dotted line with triangle) glass bead addition (Ø = 500 μm, 100 g/L).
Figure 3Chemical structures of the three AD metabolites gephyromycin (GPM, 1), 2-hydroxy-tetrangomycin (2-HT, 2) and 2-hydroxy-frigocyclinone (2-HF, 3) derived from strain NJES-13T.
The 1H and 13C NMR data for 2-hydroxy-frigocyclinone (2-HF).
| Position |
|
| Position |
|
|
|---|---|---|---|---|---|
| 1 | — | 192.5, Cq | 12 | — | 172.1, Cq |
| 2 | 4.90 | 75.2, CH | 12a | — | 138.2, Cq |
| 3 | — | 73.2, Cq | 12b | — | 139.1, Cq |
| 4 | 2.63 | 42.2, CH2 | 13 | 1.32 (s) | 20.3, CH3 |
| 4a | — | 147.2, Cq | 1’ | 4.92ax (m) | 78.7, CH |
| 5 | 7.57 | 132.6, CH | 2’ | 2.05eq/1.45ax (m) | 30.7, CH2 |
| 6 | 7.92 (d, 8.0) | 129.9, CH | 3’ | 1.84eq/1.58ax (m) | 20.2, CH2 |
| 6a | — | 132.5, Cq | 4’ | 2.25ax (m) | 72.4, CH |
| 7 | — | 181.0, Cq | 5’ | 3.98eq (m) | 78.5, CH |
| 7a | — | 118.5, Cq | 6’ | 1.21 (d, 6.8) | 10.7, CH3 |
| 8 | — | 159.9, Cq | 7’, 8’ | 2.20 (s) | 41.8, CH3 |
| 9 | — | 138.4, Cq | 2-OH | 6.04 (s) | — |
| 10 | 7.40 | 132.4, CH | 3-OH | 4.95 (br) | — |
| 11 | 7.43 | 120.7, CH | 8-OH | 12.10 (s, br) | — |
| 11a | — | 136.2, Cq |
d from TMS in DMSO-d6; J in Hz.
Figure 4Key HMBC (H→C) correlation analysis of 2-HF.
The bioactivity evaluation results of the three AD metabolites derived from strain NJES-13T.
| Tested Compounds | Antibacterial Activity | Cytotoxic Activity | ||||
|---|---|---|---|---|---|---|
|
|
|
| HL-60 | Bel-7402 | A549 | |
| Gephyromycin (GPM) | >100 | >100 | >100 | 133.2 | 108.7 | 154.3 |
| 2-Hydroxy-tetrangomycin (2-HT) | 27.2 | 14.1 | 15.6 | 25.8 | 35.6 | 14.1 |
| 2-Hydroxy-frigocyclinone (2-HF) | 15.4 | 5.7 | 8.5 | 8.4 | 4.2 | 5.5 |
MIC, minimum inhibitory concentration; IC50, half maximal inhibitory concentration; HL-60, human leukemic cell line; Bel-7402, human hepatocellular carcinoma cell line; A549, human lung cancer cell line; S. aureus, Staphylococcus aureus ATCC 12600; B. subtilis, Bacillus subtilis ATCC 6051; C. albicans, Candida albicans ATCC 10231.
Figure 5Schematic diagram of the gene cluster responsible for the biosynthesis of the AD metabolites derived from strain NJES-13T.
Figure 6Plausible biogenetic pathway of the three ADs metabolites in strain NJES-13T.