Literature DB >> 35024087

Deep Learning-Based Parameter Mapping with Uncertainty Estimation for Fat Quantification using Accelerated Free-Breathing Radial MRI.

Shu-Fu Shih1,2, Sevgi Gokce Kafali1,2, Tess Armstrong1, Xiaodong Zhong3, Kara L Calkins4, Holden H Wu1,2.   

Abstract

Deep learning has been applied to remove artifacts from undersampled MRI and to replace time-consuming signal fitting in quantitative MRI, but these have usually been treated as separate tasks, which does not fully exploit the shared information. This work proposes a new two-stage framework that completes these two tasks in a concerted approach and also estimates the pixel-wise uncertainty levels. Results from accelerated free-breathing radial MRI for liver fat quantification demonstrate that the proposed framework can achieve high image quality from undersampled radial data, high accuracy for liver fat quantification, and detect uncertainty caused by noisy input data. The proposed framework achieved 3-fold acceleration to <1 min scan time and reduced the computational time for signal fitting to <100 ms/slice in free-breathing liver fat quantification.

Entities:  

Keywords:  deep learning; fat quantification; free-breathing MRI; radial MRI; uncertainty estimation

Year:  2021        PMID: 35024087      PMCID: PMC8745355          DOI: 10.1109/isbi48211.2021.9433938

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  12 in total

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Journal:  Magn Reson Med       Date:  2000-05       Impact factor: 4.668

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Authors:  Michael Lustig; David Donoho; John M Pauly
Journal:  Magn Reson Med       Date:  2007-12       Impact factor: 4.668

3.  Robust water-fat separation for multi-echo gradient-recalled echo sequence using convolutional neural network.

Authors:  JaeJin Cho; HyunWook Park
Journal:  Magn Reson Med       Date:  2019-02-20       Impact factor: 4.668

4.  Fat water decomposition using globally optimal surface estimation (GOOSE) algorithm.

Authors:  Chen Cui; Xiaodong Wu; John D Newell; Mathews Jacob
Journal:  Magn Reson Med       Date:  2014-03-06       Impact factor: 4.668

5.  Effect of respiratory motion on free-breathing 3D stack-of-radial liver R 2 relaxometry and improved quantification accuracy using self-gating.

Authors:  Xiaodong Zhong; Tess Armstrong; Marcel D Nickel; Stephan A R Kannengiesser; Li Pan; Brian M Dale; Vibhas Deshpande; Berthold Kiefer; Holden H Wu
Journal:  Magn Reson Med       Date:  2019-11-04       Impact factor: 4.668

6.  Free-breathing liver fat quantification using a multiecho 3D stack-of-radial technique.

Authors:  Tess Armstrong; Isabel Dregely; Alto Stemmer; Fei Han; Yutaka Natsuaki; Kyunghyun Sung; Holden H Wu
Journal:  Magn Reson Med       Date:  2017-04-16       Impact factor: 4.668

7.  Water-fat separation and parameter mapping in cardiac MRI via deep learning with a convolutional neural network.

Authors:  James W Goldfarb; Jason Craft; J Jane Cao
Journal:  J Magn Reson Imaging       Date:  2019-01-30       Impact factor: 4.813

8.  Robust water/fat separation in the presence of large field inhomogeneities using a graph cut algorithm.

Authors:  Diego Hernando; P Kellman; J P Haldar; Z-P Liang
Journal:  Magn Reson Med       Date:  2010-01       Impact factor: 4.668

9.  Composition of adipose tissue and marrow fat in humans by 1H NMR at 7 Tesla.

Authors:  Jimin Ren; Ivan Dimitrov; A Dean Sherry; Craig R Malloy
Journal:  J Lipid Res       Date:  2008-05-28       Impact factor: 5.922

10.  Separation of water and fat signal in whole-body gradient echo scans using convolutional neural networks.

Authors:  Jonathan Andersson; Håkan Ahlström; Joel Kullberg
Journal:  Magn Reson Med       Date:  2019-04-29       Impact factor: 4.668

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