Literature DB >> 35023908

Functional Prediction of Biological Profile During Eutrophication in Marine Environment.

Yousra Sbaoui1, Badreddine Nouadi1, Abdelkarim Ezaouine1, Mohamed Rida Salam1, Mariame Elmessal1, Faiza Bennis1, Fatima Chegdani1.   

Abstract

In the marine environment, coastal nutrient pollution and algal blooms are increasing in many coral reefs and surface waters around the world, leading to higher concentrations of dissolved organic carbon (DOC), nitrogen (N), phosphate (P), and sulfur (S) compounds. The adaptation of the marine microbiota to this stress involves evolutionary processes through mutations that can provide selective phenotypes. The aim of this in silico analysis is to elucidate the potential candidate hub proteins, biological processes, and key metabolic pathways involved in the pathogenicity of bacterioplankton during excess of nutrients. The analysis was carried out on the model organism Escherichia coli K-12, by adopting an analysis pipeline consisting of a set of packages from the Cystoscape platform. The results obtained show that the metabolism of carbon and sugars generally are the 2 driving mechanisms for the expression of virulence factors.
© The Author(s) 2022.

Entities:  

Keywords:  Differentially expressed genes; copiotrophic species; functional analysis virulence; metabolic pathways

Year:  2022        PMID: 35023908      PMCID: PMC8744080          DOI: 10.1177/11779322211063993

Source DB:  PubMed          Journal:  Bioinform Biol Insights        ISSN: 1177-9322


  66 in total

1.  Starvation-Induced Stress Resistance in Lactococcus lactis subsp. lactis IL1403.

Authors:  A Hartke; S Bouche; X Gansel; P Boutibonnes; Y Auffray
Journal:  Appl Environ Microbiol       Date:  1994-09       Impact factor: 4.792

2.  Ecological consequences of bacterioplankton lifestyles: changes in concepts are needed.

Authors:  Hans-Peter Grossart
Journal:  Environ Microbiol Rep       Date:  2010-12       Impact factor: 3.541

Review 3.  Regulating the Intersection of Metabolism and Pathogenesis in Gram-positive Bacteria.

Authors:  Anthony R Richardson; Greg A Somerville; Abraham L Sonenshein
Journal:  Microbiol Spectr       Date:  2015-06

4.  A Network Biology Approach to Decipher Stress Response in Bacteria Using Escherichia coli As a Model.

Authors:  Shashwat Deepali Nagar; Bhavye Aggarwal; Shikha Joon; Rakesh Bhatnagar; Sonika Bhatnagar
Journal:  OMICS       Date:  2016-05

5.  Impacts of chemical contamination on bacterio-phytoplankton coupling.

Authors:  Olivier Pringault; Marc Bouvy; Claire Carre; Eric Fouilland; Marouan Meddeb; Kaouther Mejri; Christophe Leboulanger; Asma Sakka Hlaili
Journal:  Chemosphere       Date:  2020-05-23       Impact factor: 7.086

6.  Global microbialization of coral reefs.

Authors:  Andreas F Haas; Mohamed F M Fairoz; Linda W Kelly; Craig E Nelson; Elizabeth A Dinsdale; Robert A Edwards; Steve Giles; Mark Hatay; Nao Hisakawa; Ben Knowles; Yan Wei Lim; Heather Maughan; Olga Pantos; Ty N F Roach; Savannah E Sanchez; Cynthia B Silveira; Stuart Sandin; Jennifer E Smith; Forest Rohwer
Journal:  Nat Microbiol       Date:  2016-04-25       Impact factor: 17.745

Review 7.  Carbon catabolite repression in bacteria: many ways to make the most out of nutrients.

Authors:  Boris Görke; Jörg Stülke
Journal:  Nat Rev Microbiol       Date:  2008-08       Impact factor: 60.633

8.  Cytoscape 2.8: new features for data integration and network visualization.

Authors:  Michael E Smoot; Keiichiro Ono; Johannes Ruscheinski; Peng-Liang Wang; Trey Ideker
Journal:  Bioinformatics       Date:  2010-12-12       Impact factor: 6.937

Review 9.  Bacterial Metabolism and Antibiotic Efficacy.

Authors:  Jonathan M Stokes; Allison J Lopatkin; Michael A Lobritz; James J Collins
Journal:  Cell Metab       Date:  2019-07-03       Impact factor: 27.287

Review 10.  SARS-CoV-2 as Enteric Virus in Wastewater: Which Risk on the Environment and Human Behavior?

Authors:  Yousra Sbaoui; Faïza Bennis; Fatima Chegdani
Journal:  Microbiol Insights       Date:  2021-03-15
View more
  1 in total

1.  Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota.

Authors:  Yousra Sbaoui; Abdelkarim Ezaouine; Marwene Toumi; Rózsa Farkas; Mouad Ait Kbaich; Mouna Habbane; Sara El Mouttaqui; Fatem Zahra Kadiri; Mariame El Messal; Erika Tóth; Faiza Bennis; Fatima Chegdani
Journal:  Microorganisms       Date:  2022-08-10
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.