Literature DB >> 35022928

Description of Aureibaculum luteum sp. nov. and Aureibaculum flavum sp. nov. isolated from Antarctic intertidal sediments.

Xiao-Yan He1, Ning-Hua Liu1, Chao-Yi Lin1, Mei-Ling Sun2, Xiu-Lan Chen1,3, Yu-Zhong Zhang1,3,2, Yu-Qiang Zhang4, Xi-Ying Zhang5,6.   

Abstract

Two Gram-stain-negative, aerobic, non-motile, and rod-shaped bacterial strains, designated SM1352T and A20T, were isolated from intertidal sediments collected from King George Island, Antarctic. They shared 99.8% 16S rRNA gene sequence similarity with each other and had the highest sequence similarity of 98.1% to type strain of Aureibaculum marinum but < 93.4% sequence similarity to those of other known bacterial species. The genomes of strains SM1352T and A20T consisted of 5,108,092 bp and 4,772,071 bp, respectively, with the G + C contents both being 32.0%. They respectively encoded 4360 (including 37 tRNAs and 6 rRNAs) and 4032 (including 36 tRNAs and 5 rRNAs) genes. In the phylogenetic trees based on 16S rRNA gene and single-copy orthologous clusters (OCs), both strains clustered with Aureibaculum marinum and together formed a separate branch within the family Flavobacteriaceae. The ANI and DDH values between the two strains and Aureibaculum marinum BH-SD17T were all below the thresholds for species delineation. The major cellular fatty acids (> 10%) of the two strains included iso-C15:0, iso-C15:1 G, iso-C17:0 3-OH. Their polar lipids predominantly included phosphatidylethanolamine, one unidentified aminophospholipid, one unidentified aminolipid, and two unidentified lipids. Genomic comparison revealed that both strains possessed much more glycoside hydrolases and sulfatase-rich polysaccharide utilization loci (PULs) than Aureibaculum marinum BH-SD17T. Based on the above polyphasic evidences, strains SM1352T and A20T represent two novel species within the genus Aureibaculum, for which the names Aureibaculum luteum sp. nov. and Aureibaculum flavum sp. nov. are proposed. The type strains are SM1352T (= CCTCC AB 2014243 T = JCM 30335 T) and A20T (= CCTCC AB 2020370 T = KCTC 82503 T), respectively.
© 2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Antarctic intertidal sediments; Aureibaculum flavum sp. nov.; Aureibaculum luteum sp. nov.; Flavobacteriaceae; Polyphasic taxonomy; Polysaccharide utilization loci

Mesh:

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Year:  2022        PMID: 35022928     DOI: 10.1007/s10482-021-01702-8

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  27 in total

1.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.

Authors:  Jongsik Chun; Jae-Hak Lee; Yoonyoung Jung; Myungjin Kim; Seil Kim; Byung Kwon Kim; Young-Woon Lim
Journal:  Int J Syst Evol Microbiol       Date:  2007-10       Impact factor: 2.747

2.  Inhibitory influence of unstimulated rods in the human retina: evidence provided by examining cone flicker.

Authors:  S H Goldberg; T E Frumkes; R W Nygaard
Journal:  Science       Date:  1983-07-08       Impact factor: 47.728

3.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

4.  Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT.

Authors:  Tristan Barbeyron; François Thomas; Valérie Barbe; Hanno Teeling; Chantal Schenowitz; Carole Dossat; Alexander Goesmann; Catherine Leblanc; Frank Oliver Glöckner; Mirjam Czjzek; Rudolf Amann; Gurvan Michel
Journal:  Environ Microbiol       Date:  2016-11-13       Impact factor: 5.491

5.  Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic.

Authors:  Christin M Bennke; Karen Krüger; Lennart Kappelmann; Sixing Huang; Angélique Gobet; Margarete Schüler; Valérie Barbe; Bernhard M Fuchs; Gurvan Michel; Hanno Teeling; Rudolf I Amann
Journal:  Environ Microbiol       Date:  2016-07-18       Impact factor: 5.491

6.  Ecology of marine Bacteroidetes: a comparative genomics approach.

Authors:  Beatriz Fernández-Gómez; Michael Richter; Margarete Schüler; Jarone Pinhassi; Silvia G Acinas; José M González; Carlos Pedrós-Alió
Journal:  ISME J       Date:  2013-01-10       Impact factor: 10.302

7.  Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity.

Authors:  Tristan Barbeyron; Loraine Brillet-Guéguen; Wilfrid Carré; Cathelène Carrière; Christophe Caron; Mirjam Czjzek; Mark Hoebeke; Gurvan Michel
Journal:  PLoS One       Date:  2016-10-17       Impact factor: 3.240

8.  Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.

Authors:  Elizabeth Ficko-Blean; Aurélie Préchoux; François Thomas; Tatiana Rochat; Robert Larocque; Yongtao Zhu; Mark Stam; Sabine Génicot; Murielle Jam; Alexandra Calteau; Benjamin Viart; David Ropartz; David Pérez-Pascual; Gaëlle Correc; Maria Matard-Mann; Keith A Stubbs; Hélène Rogniaux; Alexandra Jeudy; Tristan Barbeyron; Claudine Médigue; Mirjam Czjzek; David Vallenet; Mark J McBride; Eric Duchaud; Gurvan Michel
Journal:  Nat Commun       Date:  2017-11-22       Impact factor: 14.919

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  Insights into the κ/ι-carrageenan metabolism pathway of some marine Pseudoalteromonas species.

Authors:  Andrew G Hettle; Joanne K Hobbs; Benjamin Pluvinage; Chelsea Vickers; Kento T Abe; Orly Salama-Alber; Bailey E McGuire; Jan-Hendrik Hehemann; Joseph P M Hui; Fabrice Berrue; Arjun Banskota; Junzeng Zhang; Eric M Bottos; Jonathan Van Hamme; Alisdair B Boraston
Journal:  Commun Biol       Date:  2019-12-19
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