| Literature DB >> 35011244 |
Alberto Macario1, Susana Blanco1, Ibon Alkorta2, Juan Carlos López1.
Abstract
The rotational spectrum of the pentafluoropyridine-Ne complex, generated in a supersonic jet, has been investigated using chirped-pulse microwave Fourier transform spectroscopy in the 2-8 GHz range. The spectra of the 20Ne and 22Ne species have been observed, and the rotational constants have been used to determine the structure of the complex. This structure, and those of the previously experimentally studied complexes benzene-Ne and pyridine-Ne, are an excellent benchmark for the theoretical calculations on these adducts. These complexes and hexafluorobenzene-Ne have been investigated at the CCSD/6-311++G(2d,p) level. The calculations reproduce the experimental structures well and show how the van der Waals complexes are stronger for the perfluorinated compound.Entities:
Keywords: computational chemistry; fluorine aromatic compounds; rotational spectroscopy; structure; van der Waals interactions
Year: 2021 PMID: 35011244 PMCID: PMC8746256 DOI: 10.3390/molecules27010017
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1A section of the CP-FTMW spectrum in the 5.0–5.6 GHz region recorded from a supersonic jet expansion of F5PY diluted in Ne. The comparison with the prediction of the spectrum carried out from the rotational parameters predicted at CCSD/6-311++G(2d,p) (upper blue inverted trace) for F5PY-Ne complex helps to identify the patterns of the 40,4←31,3, 41,4←30,3 and 33,1←22,0, 33,0←22,1 doublets for both the parent (blue arrow) and 22Ne (red arrow) isotopologues. The excerpt compares the observed and predicted 14N quadrupole coupling hyperfine structure for the 33,0←22,1 transition where the components are identified by the quantum number F, taking values from (J + I) to (J − I) reflecting the coupling between the overall rotation moment (J) and 14N nuclear spin moments (I = 1).
Experimental rotational parameters for the F5PY-20Ne and F5PY-22Ne isotopologues and their comparison to the predicted CCSD/6-311++G(2d,p) values for the parent species (Figure 2).
| F5PY-20Ne | F5PY-22Ne | ||
|---|---|---|---|
|
| exp | CCSD | exp |
| 940.26871(21) b | 962.2 | 911.57618(20) | |
| 769.84484(19) | 780.8 | 752.84325(17) | |
| 617.16139(13) | 618.2 | 615.66886(11) | |
|
| −0.05 | −0.05 | −0.07 |
| 468.93082(23) | 469.7 | 468.87713(21) | |
| 349.94576(23) | 347.7 | 351.98461(21) | |
| 187.53784(23) | 177.5 | 202.41668(21) | |
| 0.4055(25) | 0.4890(23) | ||
| 6.329(10) | 6.1360(91) | ||
| −5.5700(68) | −5.4288(59) | ||
| 0.1045(12) | 0.1066(11) | ||
| −4.2430(84) | −3.9140(73) | ||
| 3/2( | 2.9536(29) | 3.11 | 2.9595(26) |
| 1/4( | −1.37697(75) | −1.51 | −1.33170(67) |
| 1.9687(19) | 2.07 | 1.9730(17) | |
| −3.7383(25) | −4.05 | −3.6499(22) | |
| 1.7696(25) | 1.98 | 1.6769(22) | |
|
| 139 | 118 | |
| 3.2 | 2.6 | ||
a A, B, and C are the rotational constants. κ is the Ray asymmetry parameter κ = (2B − A − C)/(A − C). Pαα (α = a, b, c) are the planar moments of inertia, derived from the inertial moments Pcc = (Ia + Ib − Ic)/2. ΔJ, ΔJK, ΔK, δJ, and δK, are the quartic centrifugal distortion constants. χaa, χbb, and χcc are the 14N quadrupole coupling constants. n is the number of quadrupole coupling components fitted. σ is the rms deviation of the fit. b Standard errors in parentheses in units of the last digit.
Comparison of the rotational constants (A, B, C), the moments of inertia (Ia, Ib, Ic), and the planar moments (Paa, Pbb, Pcc) of F5PY and F5PY-Ne.
| Parameters | F5PY a | F5PY-20Ne | F5PY-22Ne |
|---|---|---|---|
| 1481.58184(19) b | 940.26871(21) | 911.57618(20) | |
| 1075.37335(17) | 769.84484(19) | 752.84325(17) | |
| 623.11194(16) | 617.16139(13) | 615.66886(11) | |
| 341.107724(44) | 537.80275(12) | 554.73049(12) | |
| 469.956791(74) | 656.85847(16) | 671.69241(15) | |
| 811.05653(21) | 819.36283(17) | 821.34916(15) | |
| 469.95280(16) | 468.93082(23) | 468.87713(21) | |
| 341.10373(16) | 349.94576(23) | 351.98461(21) | |
| 0.00399(16) | 187.53784(23) | 202.41668(21) | |
| 1.9664(53) | 1.9687(19) | 1.9730(17) | |
| −3.9534(72) | −3.7383(25) | −3.6499(22) | |
| 1.9870(72) | 1.7696(25) | 1.6769(22) |
a Taken from reference [35]. b Standard errors in parenthesis in units of the last digit.
Figure 2The structure of F5PY-Ne adduct: (a) The CCSD/6-311++G(2d,p) predicted structure is drawn with a translucent Ne atom to show the location of the Ne atom (white small sphere) according to the rs coordinates. (b) The structure gives the values of the r0 and re (MP2/aug-cc-pVTZ) van der Waals bonding parameters. (c) The location of the F5PY and F5PY-Ne inertial axes is shown together with the definition of the angle θ. rcm is the F5PY center of mass and rc is the ring centroid.
Principal inertial axis coordinates for the neon atom of pentafluoropyridine···Ne complex. The table compares the substitution (rs) and effective (r0) coordinates with those (re) calculated at the CCSD/6-311++G(2d,p) (CCSD) computational methods. The table also compares the effective bonding parameters determined from a least-squares fit of the observed rotational constants, and the angle θ of rotation between the principal inertial axis systems of F5PY and F5PY-Ne.
| rs Coordinates |
|
|
|
|---|---|---|---|
|
| [0.0000] a | 0.9672(15) b | 2.75959(54) |
|
| 0.0000 | 0.911(23) | 2.8134(64) |
|
| 0.0000 | 0.814 | 2.757022 |
|
|
|
|
|
|
| 3.480(6) | 3.359 | |
|
| 70.2(2) | 69.2 | |
|
| 3.278(8) | 3.192 | |
|
| 3.307(9) | 3.215 | 3.260 |
|
| 86.8(5) | 86.8 | |
|
| 82.8(5) | 82.2 | |
|
| 7.2(5) | 7.2 | 8.1 |
|
| 9.8 | 8.6 | |
|
| experimental | Residuals g | |
|
| 940.26871(21) | −1.56 | |
|
| 769.84484(19) | 0.41 | |
|
| 617.16139(13) | 0.60 | |
|
| 911.57618(20) | −0.84 | |
|
| 752.84325(17) | 1.13 | |
|
| 615.66886(11) | 0.47 |
a The coordinate in square brackets is fixed to zero due to symmetry. b Estimated errors are given in parentheses in units of the last digit calculated according to ref [48]. c Distance from Ne to the ring-centroid (rc, see Figure 3). d Distance from Ne to the F5PY center of mass (rcm, see Figure 3).e angle between the line from Ne to the ring center of mass (rcm) and a line perpendicular to the ring. f see Figure 2 for definition. g Differences between the experimental constants and those calculated from the determined r0 structure.
Intermolecular distance between the center of mass of the aromatic system and the Neon atom (Å), R, and the deviation of the perpendicular axes (°), φ. The values from experimental data sources are provided in parenthesis.
| Param. | Method | F5PY-Ne | PY-Ne | F6BZ-Ne | BZ-Ne |
|---|---|---|---|---|---|
| R/Å | CCSD | 3.215 | 3.325 | 3.199 | 3.313 |
| ( | (3.260 a, 3.302) | (3.316 b, 3.400 c) | (3.2989 d, 3.462 e) | ||
| φ/° | CCSD | 7.8 | 4.6 | 0.0 | 0.0 |
| ( | (7.2 a, 8.1) | (4.2 b, 6.2 c) | (0.0 d, 0.0 e) |
ars value, this work. b Equilibrium values corresponding to a study of van der Waals motions [17]. c Ref. [20]. d Equilibrium values corresponding to a study of van der Waals motions Ref. [13]. e Ref. [13].
Figure 3A sketch where the CCSD/6-311++G(2d,p) van der Waals predicted structure of F5PY-Ne (blue) is compared with that of PY-Ne (red) [20].
Bonding energies (BE in kJmol−1) calculated at the CCSD(T) level and DFT-SAPT contributions for the complexes PY-Ne, BZ-Ne, F5PY-Ne, and F6BZ-Ne.
| BE[CCSD(T)] | Elect. | Exchange | Induction | Dispersion | δHF | |
|---|---|---|---|---|---|---|
| PY-Ne | −2.9 | −0.66 | 2.21 | 0.02 | −3.05 | −0.10 |
| BZ-Ne | −2.8 | −0.81 | 2.67 | 0.01 | −3.27 | −0.14 |
| F5PY-Ne | −4.9 | −0.87 | 2.91 | −0.04 | −3.74 | −0.13 |
| F6BZ-Ne | −4.9 | −1.03 | 3.33 | 0.01 | −3.87 | −0.16 |
Figure 4Molecular graph showing three bond critical points (left) and NCIPlot (right) of the F5PY-Ne complex.