| Literature DB >> 35008294 |
Damla Isci1, Giulia D'Uonnolo2,3, May Wantz2, Bernard Rogister1,4, Arnaud Lombard1,5, Andy Chevigné2, Martyna Szpakowska2,6, Virginie Neirinckx1.
Abstract
Gliomas are severe brain malignancies, with glioblastoma (GBM) being the most aggressive one. Despite continuous efforts for improvement of existing therapies, overall survival remains poor. Over the last years, the implication of chemokines and their receptors in GBM development and progression has become more evident. Recently, large amounts of clinical data have been made available, prompting us to investigate chemokine receptors in GBM from a still-unexplored patient-oriented perspective. This study aims to highlight and discuss the involvement of chemokine receptors-CCR1, CCR5, CCR6, CCR10, CX3CR1, CXCR2, CXCR4, ACKR1, ACKR2, and ACKR3-most abundantly expressed in glioma patients based on the analysis of publicly available clinical datasets. Given the strong intratumoral heterogeneity characterizing gliomas and especially GBM, receptor expression was investigated by glioma molecular groups, by brain region distribution, emphasizing tissue-specific receptor functions, and by cell type enrichment. Our study constitutes a clinically relevant and patient-oriented guide that recapitulates the expression profile and the complex roles of chemokine receptors within the highly diversified glioma landscape. Additionally, it strengthens the importance of patient-derived material for development and precise amelioration of chemokine receptor-targeting therapies.Entities:
Keywords: chemokine receptor; glioma; malignant processes; patient-derived transcriptomic data; tumor microenvironment
Year: 2021 PMID: 35008294 PMCID: PMC8749846 DOI: 10.3390/cancers14010130
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
General information about the datasets used in the review.
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| Selected information | Gene expression in three glioma subgroups (correlated with severity) | Gene expression in five anatomical locations within GBM tumors | Gene expression in 4 different glioma-related cell subtypes | Gene expression in 7 different glioma-related cell subtypes |
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| Method | Bulk RNAseq (HiSeq) | Bulk RNAseq (HiSeq) after laser microdissection | Single cell RNAseq (NextSeq) | Single-cell RNAseq (SMART-Seq2) |
| Datasets, number of samples and patients | Brain lower grade glioma, LGG (513 patients) | Glioblastoma (122 samples/10 patients) | Glioblastoma (3589 cells/4 patients) | Adult and pediatric glioblastoma (IDHwt) |
| Data expressed as | Log2 RSEM | Log2 RSEM | Log2 CPM | Log TPM |
Legend: CPM: counts per million; IDHwt: IDH wild-type; RNAseq: RNA sequencing; RSEM: RNA-Seq by expectation maximization; TPM: transcripts per million.
Figure 1Chemokine receptor expression in glioma patients (TCGA LGG-GBM dataset [25], GlioVis platform25). (a) Heatmap displaying log2 RSEM value for the 22 receptors of interest. Each cell represents one patient. The receptors that will be highlighted in this review are underlined. (b) For every receptor, log2 RSEM values were grouped into 3 categories (based on glioma genomic features). Each dot represents one patient. Data are downloaded from http://gliovis.bioinfo.cnio.es (accessed on 23 November 2021), data are represented as Mean ± SD, and analyzed via one-way ANOVA (vs. “IDHmut 1p19q codel”: ** p < 0.01; *** p < 0.001 and vs. “IDHmut 1p19q non codel”: ## p < 0.01; ### p < 0.001).
Figure 2Chemokine receptor expression in various areas of GBM tumors (IvyGAP project). The heatmap displays log2 RSEM value for each receptor, in the various tumor subregions. Each cell represents one sample. Legend: LE: leading edge; IT: infiltrative tumor; CT: cellular tumor; PAN: pseudopalisading cells around necrosis: MVP: microvascular proliferation. Data is downloaded from https://glioblastoma.alleninstitute.org (accessed on 23 November 2021).
Figure 3Chemokine receptor expression in various cell types within patient glioma samples. (a) Single cell RNAseq data from Neftel et al. (2019, Cell) [7] show the expression of the ten selected receptors in cells regrouped in four specific annotations (macrophage, malignant cell, oligodendrocyte and T-cell). The “% expressing” value indicates the proportion of cells in the signature that are positive for a given transcript, and the “scaled mean expression” is relative to each gene’s expression level (logTPM) across all cells within the signature (https://singlecell.broadinstitute.org/single_cell/study/SCP393/ (accessed on 23 November 2021). (b) Single-cell RNAseq data from Darmanis et al. (2017, Cell Reports) [27] show the expression of the ten receptors of interest in cells regrouped in seven specific annotations (neoplastic cells, vascular cells, myeloid cells, neurons, oligodendrocytes, oligodendrocyte precursor cells (OPCs) and astrocytes). Bar plots indicate log2CPM values (http://www.gbmseq.org/ (accessed on 23 November 2021)).
Summary of chemokine receptor function in GBM tumorigenic processes and in GBM cell subtypes. Legend: TAMs: tumor-associated macrophages; TILs: tumor-infiltrating lymphocytes; : evidence from in vitro experiments (GSCs and others); : evidence from patient tissue; : still debated.
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| Processes | Angiogenesis |
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