| Literature DB >> 35007139 |
Mark S Butler1,2, Valeria Gigante3, Hatim Sati3, Sarah Paulin3, Laila Al-Sulaiman3, John H Rex4,5, Prabhavathi Fernandes6,7, Cesar A Arias8,9, Mical Paul10,11, Guy E Thwaites12,13, Lloyd Czaplewski14, Richard A Alm15, Christian Lienhardt16, Melvin Spigelman17, Lynn L Silver18, Norio Ohmagari19, Roman Kozlov20, Stephan Harbarth21,22, Peter Beyer3.
Abstract
There is an urgent global need for new strategies and drugs to control and treat multidrug-resistant bacterial infections. In 2017, the World Health Organization (WHO) released a list of 12 antibiotic-resistant priority pathogens and began to critically analyze the antibacterial clinical pipeline. This review analyzes "traditional" and "nontraditional" antibacterial agents and modulators in clinical development current on 30 June 2021 with activity against the WHO priority pathogens mycobacteria and Clostridioides difficile. Since 2017, 12 new antibacterial drugs have been approved globally, but only vaborbactam belongs to a new antibacterial class. Also innovative is the cephalosporin derivative cefiderocol, which incorporates an iron-chelating siderophore that facilitates Gram-negative bacteria cell entry. Overall, there were 76 antibacterial agents in clinical development (45 traditional and 31 nontraditional), with 28 in phase 1, 32 in phase 2, 12 in phase 3, and 4 under regulatory evaluation. Forty-one out of 76 (54%) targeted WHO priority pathogens, 16 (21%) were against mycobacteria, 15 (20%) were against C. difficile, and 4 (5%) were nontraditional agents with broad-spectrum effects. Nineteen of the 76 antibacterial agents have new pharmacophores, and 4 of these have new modes of actions not previously exploited by marketed antibacterial drugs. Despite there being 76 antibacterial clinical candidates, this analysis indicated that there were still relatively few clinically differentiated antibacterial agents in late-stage clinical development, especially against critical-priority pathogens. We believe that future antibacterial research and development (R&D) should focus on the development of innovative and clinically differentiated candidates that have clear and feasible progression pathways to the market.Entities:
Keywords: Clostridioides difficile; WHO priority pathogens; antibacterial pipeline; antibiotic; clinical trials; mycobacteria; nontraditional; traditional; tuberculosis
Mesh:
Substances:
Year: 2022 PMID: 35007139 PMCID: PMC8923189 DOI: 10.1128/AAC.01991-21
Source DB: PubMed Journal: Antimicrob Agents Chemother ISSN: 0066-4804 Impact factor: 5.191
FIG 1List of the WHO’s critical-, high-, and medium-priority pathogens (3, 4) and mycobacteria. *, Enterobacteriaceae (Escherichia coli, Enterobacter spp., and Klebsiella pneumoniae) and Enterobacterales (Morganella spp., Proteus spp., Providencia spp., and Serratia spp.).
The five classification categories of nontraditional antibacterial agents
| Nontraditional classification | Definition |
|---|---|
| Antibodies | A protein component of the immune system (or synthetic equivalent) that circulates in the blood and recognizes foreign substances like bacteria and viruses |
| Bacteriophages and phage-derived enzymes | Substances that directly cause pathogen lysis that are phage-derived recombinant enzymes or phages (including those engineered as nano-delivery vehicles) |
| Microbiome-modulating agents | Approaches that seek to modify the microbiome to eliminate or prevent carriage of resistant or pathogenic bacteria manipulating the metabolism of microbiota |
| Immunomodulating agents | Compounds that augment, stimulate, or suppress host immune responses that modify the course of infection |
| Miscellaneous agents | Group of strategies that seek to (i) inhibit the production or the activity of virulence factors such as toxins, (ii) impede bacterial adhesion to host cells and biofilm formation, (iii) interrupt or inhibit bacterial communication, and (iv) inhibit resistance mechanisms |
Antibacterial drugs that gained market authorization between July 2017 and June 2021
| Name (trade name) | Market authorization holder(s) | Agency/agencies granting approval (date) | Antibacterial class | Route of administration | Indication(s) | WHO EML & AWaRe | Expected activity against priority pathogens | Innovation | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRAB | CRPA | CRE | OPP | NCR | CC | T | MoA | |||||||
| Delafloxacin (Baxdela) | Melinta (Menarini, EU) | FDA (6/2017 ABSSSI, 10/2019 CAP), EMA (12/2019 ABSSSI) | Fluoroquinolone | i.v. & oral | ABSSSI, CAP | AWaRe: Watch | ○ | ○ | ○ | ● | — | — | — | — |
| Vaborbactam + meropenem (Vabomere) | Melinta (Menarini, EU) | FDA (8/2017), EMA (11/2018) | Boronate BLI + β-lactam (carbapenem) | i.v. | cUTI | WHO EML & AWaRe: Reserve | ○ | ○ | ● | NA | ? | ✓ | — | — |
| Plazomicin (Zemdri) | Achaogen (Cipla USA / QiLu Antibiotics, China) | FDA (8/2018) | Aminoglycoside | i.v. | cUTI | WHO EML & AWaRe: Reserve | ○ | ○ | ● | NA | — | — | — | — |
| Eravacycline (Xerava) | Tetraphase (La Jolla, Everest Medicines) | FDA (8/2018), EMA (9/2018) | Tetracycline | i.v. | cIAI | AWaRe: Reserve | ? | ○ | ● | NA | — | — | — | — |
| Omadacycline (Nuzyra) | Paratek | FDA (10/2018) | Tetracycline | i.v. & oral | CAP (iv), ABSSSI (iv, oral) | AWaRe: Reserve | ○ | ○ | ○ | ● | — | — | — | — |
| Relebactam + imipenem/cilastatin (Recarbrio) | MSD | FDA (7/2019 cUTI/cIAI, 7/2020 HAP/VAP), EMA (2/2020 Gram -ve) | DBO-BLI + β-lactam (carbapenem)/ degradation inhibitor | i.v. | cUTI, cIAI, HAP/VAP | AWaRe: Reserve | ○ | ? | ● | NA | — | — | — | — |
| Lefamulin (Xenleta) | Nabriva (Sunovion Pharmaceuticals Canada) | FDA (8/2019), EMA (7/2020) | Pleuromutilin | i.v. & oral | CAP | AWaRe: Reserve | NA | NA | NA | ● | ? | ✓ | — | — |
| Pretomanid (Dovprela) | Viatris (TB Alliance) | FDA (8/2019), EMA (8/2020), CDSCO (7/2020) | Nitroimidazole | Oral | XDR-TB | NA | NA | NA | ● | — | — | — | — | |
| Lascufloxacin (Lasvic) | Kyorin Pharmaceutical | PDMA (8/2019) | Fluoroquinolone | i.v. & oral | CAP, otorhinolaryngological | AWaRe: Watch | ○ | ○ | ○ | ● | — | — | — | — |
| Cefiderocol (Fetroja) | Shionogi | FDA (11/2019, cUTI; 9/21 HAP/VAP), EMA (4/2020) | Siderophore β-lactam (cephalosporin) | i.v. | FDA: cUTI, HAP/VAP, EMA: aerobic G-ve | WHO EML & AwaRe: Reserve | ● | ● | ● | NA | ? | — | — | — |
| Levonadifloxacin (Emrok), Alalevonadifloxacin (Emrok-O) | Wockhardt | CDSCO (1/2020) | Fluoroquinolone | i.v. & oral | ABSSSI | AwaRe: Watch | ○ | ○ | ○ | ● | — | — | — | — |
| Contezolid (Youxitai), Contezolid acefosamil | MicuRx | NMPA (6/2021) | Oxazolidinone | i.v. & oral | cSSTI | NA | NA | NA | ● | — | — | — | — | |
Abbreviations: ABSSSI, acute bacterial skin and skin structure infections; AwaRe, Access Watch Reserve; CAP, community-acquired pneumonia; CC, new chemical class; cIAI, complicated interabdominal infection; CRAB, carbapenem-resistant Acinetobacter baumannii; CRE, carbapenem-resistant Enterobacterales; CRPA, carbapenem-resistant P. aeruginosa; CDSCO, Central Drugs Standard Control Organization of the Government of India; cSSTI, complicated skin and soft tissue infections; cUTI, complicated urinary tract infection; EMA, European Medicines Agency; EML, essential medicines list; FDA, Food and Drug Administration (USA); HAP, hospital-acquired pneumonia; i.v., intravenous; KPC, K. pneumoniae carbapenemase; MBL, metallo-β-lactamase; OPP, other priority pathogens; MoA, new mode of action; NCR, no cross-resistance to other antibiotic classes; NMPA, China National Medical Products Administration; PDMA, Pharmaceuticals and Medical Devices Agency (Japan); T, new target; VAP, ventilator-acquired pneumonia; XDR, extensively drug-resistant.
Pathogen activity: ●, active; ?, possibly active; ○, not or insufficiently active; NA, activity not assessed, as the antibiotic is focused and developed for only either Gram-positive cocci or Gram-negative rods. Agents not active against critical-priority pathogens were assessed for activity against other priority pathogens (OPP), which includes the high and medium WHO priority pathogens.
Innovation assessment: ✓, criterion fulfilled; ?, inconclusive data; —, criterion not fulfilled.
Active against KPC- but not MBL-producing Enterobacteriaceae.
Cross-resistance can be obtained when the levels of the porin OmpK36 are varied.
First systemic formulation of this class, which was previously used in animals and topically in humans.
The approvals were obtained by the TB Alliance and then transferred to Viatris.
Approved for the treatment of XDR-TB or treatment-intolerant/nonresponsive MDR-TB, in combination with bedaquiline and linezolid.
FIG 2Structures of antibacterial drugs approved worldwide since 2017 and their approved indications and targeted priority pathogens with country and year of first approval.
Traditional antibacterial agents and combinations in NDA and phase 3 clinical development against WHO priority pathogens
| Name (synonym) | Phase | Antibacterial class | Route of administration | Developer | Expected activity against priority pathogens | Innovation | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRAB | CRPA | CRE | OPP | NCR | CC | T | MoA | |||||
| Solithromycin (T-4288) | NDA | Macrolide | i.v. & oral | iFUJIFILM Toyama Chemical | NA | NA | NA | ● | — | — | — | — |
| Sulopenem, Sulopenem etzadroxil/probenecid | NDA | β-Lactam (penem) | i.v. & oral | Iterum | ○ | ○ | ○ | NA | — | — | — | — |
| Durlobactam (ETX-2514) + sulbactam | 3 | DBO-BLI/PBP2 binder + β-lactam-BLI/PBP1,3 binder | i.v. | Entasis | ● | ○ | ○ | NA | — | — | — | — |
| Taniborbactam (VNRX-5133) + cefepime | 3 | Boronate BLI + β-lactam (cephalosporin) | i.v. | VenatoRx/GARDP | ○ | ● | ● | NA | ? | ✓ | — | — |
| Enmetazobactam (AAI-101) + cefepime | 3 | BLI + β-lactam (cephalosporin) | i.v. | Allecra | ○ | ○ | ○ | NA | — | — | — | — |
| Zoliflodacin | 3 | Spiropyrimidenetrione (topoisomerase inhibitor) | Oral | Entasis/GARDP | NA | NA | NA | ● | ✓ | ✓ | — | ✓ |
| Gepotidacin | 3 | Triazaacenaphthylene (topoisomerase inhibitor) | i.v. & oral | GSK | NA | NA | NA | ● | ? | ✓/? | — | ✓ |
| Nafithromycin (WCK-4873) | 3 | Macrolide | Oral | Wockhardt | NA | NA | NA | ● | — | — | — | — |
| Benapenem | 2/3 | β-Lactam (carbapenem) | i.v. | Sichuan Pharmaceutical | ○ | ○ | ○ | NA | — | — | — | — |
Pathogen activity: ●, active; ?, possibly active; ○, not or insufficiently active; NA, activity not assessed, as the antibiotic is focused and developed for only either Gram-positive cocci or Gram-negative rods. Agents not active against critical-priority pathogens were assessed for activity against OPP, which includes the high and medium WHO priority pathogens.
Innovation assessment: ✓, criterion fulfilled; ?, inconclusive data; —, criterion not fulfilled. CC, chemical class; MOA, new mode of action; NCR, no cross-resistance; T, new target.
Solithromycin NDA for otorhinolaryngological infections submitted in Japan in April 2019.
OPP target pathogens: solithromycin, S. pneumoniae; nafithromycin, S. aureus and S. pneumoniae; gepotidacin, N. gonorrhoeae and E. coli; zoliflodacin, N. gonorrhoeae.
Sulopenem etzadroxil NDA submitted in USA for uncomplicated UTI (uUTI) in November 2020.
Active against ESBL-producing cephalosporin-resistant but not carbapenem-resistant Enterobacterales.
Active against ESBL-producing cephalosporin-resistant and some KPC-producing CRE.
Gepotidacin is being tested in two distinct phase 3 programs: gonorrhea (NCR ✓) and uUTI (NCR ?).
Nontraditional antibacterial agents in phase 1 and 2 clinical development for WHO priority pathogens, mycobacteria, and C. difficile
FIG 3Number of traditional and nontraditional antibacterials by (A) development phase and (B) development against WHO priority pathogens, TB and NTM, C. difficile, and G+ve/G−ve.
FIG 4Traditional and nontraditional antibacterials categorized by development phase and activity against WHO critical pathogens, WHO high- and medium-priority pathogens TB and NTM, C. difficile, and nontraditional nonspecific G+ve/G−ve activity.
FIG 5Antibacterials with new pharmacophores not previously found in human antibacterial drugs by target class, target, antibacterial name (current development phase), and antibacterial class. Abbreviations: TB, tuberculosis; Sa, S. aureus; Cd, C. difficile, Ec, E. coli; Ng, N. gonorrhoeae; NTM, nontuberculosis mycobacteria; G−, Gram-negative bacteria.
Traditional antibacterial agents and combinations in phase 1 and 2 clinical development against WHO priority pathogens
| Name (synonym) | Phase | Antibacterial class | Route of administration | Developer | Expected activity against priority pathogens | Innovation | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRAB | CRPA | CRE | OPP | NCR | CC | T | MoA | |||||
| Afabicin (Debio-1450) | 2 | Pyrido-enamide (FabI inhibitor) | i.v. & oral | Debiopharm | NA | NA | NA | ● | ✓ | ✓ | ✓ | ✓ |
| TNP-2092 | 2 | Rifamycin-quinolizinone hybrid | i.v. & oral | TenNor Therapeutics | NA | NA | NA | ● | — | — | — | — |
| TNP-2198 | 1b/2a | Rifamycin-nitroimidazole conjugate | Oral | TenNor Therapeutics | NA | NA | NA | ● | — | — | — | — |
| Zidebactam + cefepime | 1 | DBO-BLI/PBP2 binder | i.v. | Wockhardt | ● | ● | ● | NA | — | — | — | — |
| Nacubactam (OP0595) + meropenem | 1 | DBO-BLI/PBP2 binder | i.v. | Meiji Seika | ○ | ○ | ● | NA | — | — | — | — |
| ETX0282 + cefpodoxime | 1 | DBO-BLI/PBP2 binder | Oral | Entasis Therapeutics | ○ | ○ | ● | NA | — | — | — | — |
| XNW-4107+ imipenem + cilastatin | 1 | BLI + β-lactam (carbapenem) / degradation inhibitor | i.v. | Sinovent | ? | ? | ? | ? | ? | ? | ? | ? |
| VNRX-7145 + ceftibuten | 1 | Boronate BLI + β-lactam (cephalosporin) | Oral | VenatoRx Pharmaceuticals | ○ | ○ | ● | NA | ? | ✓ | — | — |
| SPR-206 | 1 | Polymyxin | i.v. | Spero Therapeutics | ● | ● | ● | NA | — | — | — | — |
| MRX-8 | 1 | Polymyxin | i.v. | MicuRx | ● | ● | ● | NA | — | — | — | — |
| QPX-9003 | 1 | Polymyxin | i.v. | Qpex Biopharma | ? | ? | ? | ? | ? | ? | ? | ? |
| KBP-7072 | 1 | Tetracycline | Oral | KBP BioSciences | ● | ○ | ○ | ● | — | — | — | — |
| EBL-1003 (apramycin) | 1 | Aminoglycoside | i.v. | Juvabis | ● | ○ | ● | NA | — | — | — | — |
| TXA-709 | 1 | “Difluorobenzamide” (FtsZ inhibitor) | i.v. & oral | TAXIS Pharmaceutical | ○ | ○ | ○ | ● | ✓ | ✓ | ✓ | ✓ |
| ARX-1796 (oral avibactam prodrug) | 1 | DBO-BLI + β-lactam (undisclosed) | Oral | Arixa/Pfizer | ○ | ○ | ● | NA | — | — | — | — |
| PLG0206 (WLBU2) | 1 | Cationic peptide | i.v. | Peptilogics | ? | ? | ? | ● | ? | ✓ | ? | ? |
| QPX7728 | 1 | Boronate-BLI + β-lactam (undisclosed) / boronate-BLI + β-lactam (undisclosed) | i.v. / i.v. & oral | Qpex Biopharma | ● | ● | ● | NA | ? | — | — | — |
Pathogen activity: ●, active; ?, possibly active; ○, not or insufficiently active; NA, activity not assessed, as the antibiotic is focused and developed for only either Gram-positive cocci or Gram-negative rods. Agents not active against critical-priority pathogens were assessed for activity against OPP, which includes the high and medium WHO priority pathogens.
Innovation assessment: ✓, criterion fulfilled; ?, inconclusive data; —, criterion not fulfilled. CC, chemical class; MOA, new mode of action; NCR, no cross-resistance; T, new target.
OPP target pathogens: TNP-2198, H. pylori; afabicin, TNP-2092, KBP-7072, TXA-109, and PLG0206, S. aureus.
A phase 3 trial for zidebactam + cefepime was registered in July 2021 for cUTI or acute pyelonephritis (NCT04979806).
The DBO-BLIs zidebactam, nacubactam, and ETX0282 also have some antibacterial activity and have been classified as β-lactam enhancers (BLE) (97–99).
Previously used as an antibacterial treatment in animals.
Activity against AmpC-producing and KPC-producing CRPA. Active against KPC- but not MBL-producing Enterobacteriaceae.
The original developer, Arixa Pharmaceuticals, was acquired by Pfizer in October 2020.
PLG0206 was evaluated in phase 1 using i.v. administration, but development is currently focused on use as an irrigation solution for prosthetic joint infections.
Peptilogics recently reported that coagulase-negative staphylococci, E. coli, Enterobacter cloacae, Citrobacter freundii, P. aeruginosa, and A. baumannii (100).
QPX7728 is being evaluated with two separate β-lactams, QPX-2014 and QPX2015.
Traditional antibacterial agents in clinical development for the treatment of TB and nontuberculous mycobacteria (NTM)
| Name (synonym) | Phase | Antibiotic class | Route of administration | Developer | Innovation | |||
|---|---|---|---|---|---|---|---|---|
| NCR | CC | T | MoA | |||||
| GSK-3036656 (GSK070) | 2 | Oxaborole (Leu-Rs inhibitor) | Oral | GSK | ✓ | ✓ | ✓ | ✓ |
| Delpazolid (LCB01-0371) | 2b | Oxazolidinone | Oral | LegoChem Biosciences/HaiHe Biopharma | — | — | — | — |
| Sutezolid | 2 | Oxazolidinone | Oral | TB Alliance/Sequella | — | — | — | — |
| Telacebec (Q-203) | 2 | Imidazopyridine amide | Oral | Qurient | ✓ | ✓ | ✓ | ✓ |
| TBA-7371 | 2 | Azaindole (DprE1 inhibitor) | Oral | TB Alliance/Bill & Melinda Gates Foundation/Foundation for Neglected Disease Research | ✓ | ✓ | ✓ | ✓ |
| SPR720 | 2a | Benzimidazole ethyl urea (GyrB inhibitor | Oral | Spero/Bill & Melinda Gates Foundation | — | ✓ | — | — |
| TBI-166 (pyrifazimine) | 2 | Riminophenazine (clofazimine-analogue) | Oral | Institute of Materia Medica/TB Alliance/Chinese Academy of Medical Sciences/Peking Union Medical College | — | — | — | — |
| OPC-167832 | 1/2 | 3,4-Dihydrocarbostyril (DprE1 inhibitor) | Oral | Otsuka | ✓ | ✓ | ✓ | ✓ |
| BTZ-043 | 1/2 | Benzothiazinone (DprE1 inhibitor) | Oral | University of Munich/Hans Knöll Institute, Jena/German Center for Infection Research | ✓ | ✓ | ✓ | ✓ |
| Macozinone (PBTZ-169) | 1 | Benzothiazinone (DprE1 inhibitor) | Oral | Innovative Medicines for Tuberculosis Foundation/Nearmedic Plus | ✓ | ✓ | ✓ | ✓ |
| TBI-223 | 1 | Oxazolidinone | Oral | TB Alliance/Institute of Materia Medica | — | — | — | — |
| TBAJ-876 | 1 | Diarylquinoline | Oral | TB Alliance | — | — | — | — |
| TBAJ-587 | 1 | Diarylquinoline | Oral | TB Alliance | — | — | — | — |
| GSK 2556286 (GSK-286) | 1 | Undisclosed | Oral | GSK/TB Drug Accelerator/Bill & Melinda Gates Foundation | ? | ✓ | ✓ | ? |
Innovation assessment: ✓, criterion fulfilled; ?, inconclusive data; —, criterion not fulfilled. CC, chemical class; MOA, new mode of action; NCR, no cross-resistance; T, new target.
This phase 2a trial (NCT04553406) was on FDA clinical hold, but this was lifted in January 2022.
This is not considered to be a new mode of action, as the GyrB/ParE inhibitor novobiocin was once marketed but is no longer in clinical use.
The lead drug clofazimine is approved to treat leprosy and has been used off-label for TB treatment.
Traditional antibacterial agents in clinical development for the treatment of C. difficile infections
| Name (synonym) | Phase | Antibiotic class | Route of administration | Developer | Innovation | |||
|---|---|---|---|---|---|---|---|---|
| NCR | CC | T | MoA | |||||
| Ridinilazole | 3 | Oral | Summit Therapeutics | ✓ | ✓ | ✓ | ✓ | |
| DNV-3837 (MCB-3837) | 2 | Oxazolidinone-quinolone hybrid | i.v. | Deinove | ? | — | — | — |
| MGB-BP-3 | 2 | Distamycin (DNA minor groove binder) | Oral | MGB Biopharma | ? | ✓ | ✓ | ✓ |
| Ibezapolstat (ACX-362E) | 2 | “Substituted guanine” (DNA polymerase IIIC inhibitor) | Oral | Acurx Pharmaceuticals | ? | ✓ | ✓ | ✓ |
| CRS3123 | 2 | “Diaryldiamine” (methionyl-tRNA synthetase inhibitor; MetRS) | Oral | Crestone/NIAID | ✓ | ✓ | ✓ | ✓ |
Innovation assessment: ✓, criterion fulfilled; ?, inconclusive data; —, criterion not fulfilled. CC, chemical class; MOA, new mode of action; NCR, no cross-resistance; T, new target. These agents are being developed for C. difficile infections, and their activity against WHO priority pathogens was not assessed.
Nontraditional antibacterial agents in phase 3 clinical development
Submitted to the Australian Therapeutic Goods Association (TGA) as a potential treatment for recurrent C. difficile infections in June 2021.
Submitted to the U.S. FDA as a potential treatment for necrotizing soft tissue infections (NSTI) in December 2020.