Literature DB >> 35003853

Blood identification at the single-cell level based on a combination of laser tweezers Raman spectroscopy and machine learning.

Ziqi Wang1, Yiming Liu1, Weilai Lu2, Yu Vincent Fu2,3, Zhehai Zhou1,4.   

Abstract

Laser tweezers Raman spectroscopy (LTRS) combines optical tweezers technology and Raman spectroscopy to obtain biomolecular compositional information from a single cell without invasion or destruction, so it can be used to "fingerprint" substances to characterize numerous types of biological cell samples. In the current study, LTRS was combined with two machine learning algorithms, principal component analysis (PCA)-linear discriminant analysis (LDA) and random forest, to achieve high-precision multi-species blood classification at the single-cell level. The accuracies of the two classification models were 96.60% and 96.84%, respectively. Meanwhile, compared with PCA-LDA and other classification algorithms, the random forest algorithm is proved to have significant advantages, which can directly explain the importance of spectral features at the molecular level.
© 2021 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement.

Entities:  

Year:  2021        PMID: 35003853      PMCID: PMC8713663          DOI: 10.1364/BOE.445149

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  34 in total

1.  Receiver operating characteristic curves and their use in radiology.

Authors:  Nancy A Obuchowski
Journal:  Radiology       Date:  2003-10       Impact factor: 11.105

2.  Probing oxidative stress in single erythrocytes with Raman Tweezers.

Authors:  E Zachariah; A Bankapur; C Santhosh; M Valiathan; D Mathur
Journal:  J Photochem Photobiol B       Date:  2010-06-02       Impact factor: 6.252

3.  Evaluation of six presumptive tests for blood, their specificity, sensitivity, and effect on high molecular-weight DNA.

Authors:  Shanan S Tobe; Nigel Watson; Niamh Nic Daéid
Journal:  J Forensic Sci       Date:  2007-01       Impact factor: 1.832

4.  Effect of infrared light on live blood cells: Role of β-carotene.

Authors:  Surekha Barkur; Aseefhali Bankapur; Santhosh Chidangil; Deepak Mathur
Journal:  J Photochem Photobiol B       Date:  2017-04-27       Impact factor: 6.252

5.  On what to permute in test-based approaches for variable importance measures in Random Forests.

Authors:  Stefano Nembrini
Journal:  Bioinformatics       Date:  2019-08-01       Impact factor: 6.937

6.  Combination of an Artificial Intelligence Approach and Laser Tweezers Raman Spectroscopy for Microbial Identification.

Authors:  Weilai Lu; Xiuqiang Chen; Lu Wang; Hanfei Li; Yu Vincent Fu
Journal:  Anal Chem       Date:  2020-04-23       Impact factor: 6.986

7.  DNA Microarray Detection of 18 Important Human Blood Protozoan Species.

Authors:  Mu-Xin Chen; Lin Ai; Jun-Hu Chen; Xin-Yu Feng; Shao-Hong Chen; Yu-Chun Cai; Yan Lu; Xiao-Nong Zhou; Jia-Xu Chen; Wei Hu
Journal:  PLoS Negl Trop Dis       Date:  2016-12-02

8.  Raman tweezers sorting of single microbial cells.

Authors:  Wei E Huang; Andrew D Ward; Andrew S Whiteley
Journal:  Environ Microbiol Rep       Date:  2009-02       Impact factor: 3.541

Review 9.  Applications of Raman spectroscopy in cancer diagnosis.

Authors:  Gregory W Auner; S Kiran Koya; Changhe Huang; Brandy Broadbent; Micaela Trexler; Zachary Auner; Angela Elias; Katlyn Curtin Mehne; Michelle A Brusatori
Journal:  Cancer Metastasis Rev       Date:  2018-12       Impact factor: 9.264

Review 10.  Analysis of Biomolecules Based on the Surface Enhanced Raman Spectroscopy.

Authors:  Min Jia; Shenmiao Li; Liguo Zang; Xiaonan Lu; Hongyan Zhang
Journal:  Nanomaterials (Basel)       Date:  2018-09-15       Impact factor: 5.076

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