| Literature DB >> 35002288 |
Yao Li1, Xin Yang1, Jie Sun2, Yangyang Zhao3, Qi Zhou3, Bin Hua1.
Abstract
PURPOSE: Invasive breast carcinoma (BC) is the most common malignant breast tumor. Most lymph node-negative (LN-) early-stage BC patients usually have a good prognosis, but 7% of patients still develop metastasis after surgery. It is not yet clear how to screen candidates with poorer prognosis in LN- early-stage patients, so that they can receive intensive therapy. Hence, we expect to identify a prognostic biomarker to assess postoperative metastasis in LN- early-stage BC patients. PATIENTS AND METHODS: Screening and verifying of candidate genes by gene expression profiling of LN- early-stage BC samples (n = 640) from 3 independent public datasets. Univariable and multivariable Cox regression analyses showed the relation between the candidate genes and postoperative metastasis. Distant metastasis-free survival (DMFS) analysis was performed to examine the prognostic significance. Quantitative real-time polymerase chain reaction (qRT-PCR) assays were performed to examine ADAMTS8 expression and prognostic association in our clinical samples (n = 25).Entities:
Keywords: ADAMTS8; biomarker; distant metastasis-free survival; lymph node-negative early-stage invasive breast carcinoma
Year: 2021 PMID: 35002288 PMCID: PMC8722701 DOI: 10.2147/PGPM.S339919
Source DB: PubMed Journal: Pharmgenomics Pers Med ISSN: 1178-7066
Figure 1Study workflow.
Figure 2Low ADAMTS8 expression was correlated with a reduced postoperative distant metastasis-free survival (DMFS) time in LNN early-stage BC patients. (A and B) A total of 23 genes were simultaneously differentially expressed in both discovery cohorts (TCGA and GSE20685), 9 DEGs were upregulated in postoperative metastasis patients, and 14 DEGs were downregulated in postoperative metastasis patients. (C) The heatmap shows significant differences of the 23 DEGs in the GSE20685 dataset. Kaplan–Meier curves of DMFS between the high and low expression groups in the discovery cohort stratified by 3 genes: (D and G) stratified by ADAMTS8, (E and H) stratified by ZBTB16, (F and I) stratified by LEP.
Univariate and Multivariate Cox Regression (Forward LR Model) Analysis the 23 Common DEGs to Detect the Correlation Between DEGs Expression Levels and Clinical Outcome of LN− Early-Stage BC Patients
| TCGA Dataset | GSE20685 Dataset | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DEG (Low vs High) | Univariate Analysis | Multivariate Analysis | DEG (Low vs High) | Univariate Analysis | Multivariate Analysis | ||||||||
| HR | 95.0% CI | HR | 95.0% CI | HR | 95.0% CI | HR | 95.0% CI | ||||||
| ACADL | 0.676 | 1.191 | 0.525–2.699 | 11.690 | 1.509–90.590 | ||||||||
| ACMSD | 0.462 | 1.363 | 0.597–3.108 | ACMSD | 0.108 | 2.921 | 0.791–10.793 | ||||||
| 5.637 | 1.915–4.984 | 5.637 | 1.915–16.595 | 12.008 | 1.550–93.053 | 14.550 | 1.853–114.230 | ||||||
| ADH1B | 0.088 | 2.111 | 0.894–16.595 | 4.922 | 1.078–22.468 | ||||||||
| ADH1C | 0.243 | 1.636 | 0.715–3.742 | 11.362 | 1.467–88.019 | ||||||||
| ADIPOQ | 0.352 | 1.480 | 0.648–3.381 | 11.362 | 1.467–88.019 | ||||||||
| BPIFB1 | 0.262 | 0.619 | 0.268–1.431 | BPIFB1 | 0.226 | 0.476 | 0.143–1.582 | ||||||
| CALY | 0.156 | 0.537 | 0.228–1.268 | CALY | 0.092 | 0.325 | 0.088–1.200 | ||||||
| CRISP2 | 0.157 | 0.538 | 0.228–1.269 | CRISP2 | 0.204 | 0.459 | 0.138–1.525 | ||||||
| FABP4 | 0.366 | 1.463 | 0.641–3.340 | 5.207 | 1.141–23.770 | ||||||||
| 2.610 | 1.073–6.350 | 5.189 | 1.137–23.687 | ||||||||||
| LRRC10B | 0.117 | 0.490 | 0.201–1.194 | 0.177 | 0.039–0.809 | 14.550 | 1.853–114.230 | ||||||
| MSMB | 0.886 | 0.942 | 0.416–2.136 | MSMB | 0.544 | 1.426 | 0.453–4.494 | ||||||
| NPW | 0.061 | 0.428 | 0.176–1.040 | NPW | 0.499 | 0.673 | 0.214–2.120 | ||||||
| OTOR | 0.491 | 0.748 | 0.328–1.708 | 0.184 | 0.040–0.838 | 0.192 | 0.041 | ||||||
| PLIN4 | 0.437 | 1.387 | 0.608–3.165 | 5.141 | 1.126–23.466 | ||||||||
| TIMP4 | 0.251 | 1.634 | 0.706–3.781 | 5.239 | 1.148–23.917 | ||||||||
| TMEM132C | 0.079 | 2.161 | 0.915–5.105 | 11.979 | 1.546–92.828 | ||||||||
| TNMD | 0.334 | 1.503 | 0.658–3.432 | TNMD | 0.086 | 3.137 | 0.849–11.589 | ||||||
| TUSC5 | 0.166 | 1.811 | 0.7824.194 | 12.064 | 1.557–93.453 | 9.690 | 1.238 | ||||||
| WDR72 | 0.414 | 0.709 | 0.310–1.619 | WDR72 | 0.192 | 0.450 | 0.1351.495 | ||||||
| 2.525 | 1.038–6.140 | 12.096 | 1.561–93.704 | ||||||||||
| ZNF560 | 0.310 | 0.648 | 0.281–1.498 | ZNF560 | 0.095 | 0.329 | 0.089–1.214 | ||||||
Note: Bold figure note: this variable is statistically significant.
Abbreviations: HR, hazard ratio; CI, confidence interval.
Multivariable Cox Regression Analyses of ADAMTS8 in TCGA and GSE20685 Datasets
| Variables | TCGA | GSE20685 | ||||
|---|---|---|---|---|---|---|
| HR | 95.0% CI | HR | 95.0% CI | |||
| 0.136 | 0.038–0.493 | 0.119 | 0.014–0.977 | |||
| Age (40–59 vs <40) | 0.560 | 0.674 | 0.180–2.533 | 0.191 | 0.442 | 0.130–1.502 |
| Age (≥60 vs <40) | 0.277 | 0.479 | 0.127–1.804 | 0.981 | 0.000 | 0.000 |
| Pam50 (Her2 vs Basal) | 0.431 | 1.802 | 0.416–7.812 | 0.926 | 1.124 | 0.096–13.189 |
| Pam50 (LumA vs Basal) | 0.757 | 1.268 | 0.282–5.708 | 0.982 | 1.024 | 0.129–8.097 |
| Pam50 (LumB vs Basal) | 0.601 | 1.353 | 0.436–4.204 | 0.057 | 4.769 | 0.956–23.788 |
| Pam50 (Normal vs Basal) | 0.007 | 17.085 | 2.161–135.098 | 0.994 | 0.000 | 0.000 |
| Stage (stage II vs stage I) | 0.593 | 0.783 | 0.319–1.922 | 0.346 | 0.575 | 0.182–1.818 |
Note: Bold figure note: this variable is statistically significant.
Abbreviations: HR, hazard ratio; CI, confid.
Figure 3Verification of difference in expression and prognostic value of ADAMTS8 in the validation cohort. (A) The expression level of ADAMTS8 in metastatic and non-metastatic LN− early-stage BC patients. (B) Kaplan–Meier curves of DMFS between the ADAMTS8 high and ADAMTS8 low expression groups.
Figure 4Lower ADAMTS8 expression was related to poorer prognostic clinical stage and PAM50 subtypes and shorter DMFS time in the TCGA dataset. (A) PAM50 gene expression hierarchical in a heatmap. (B–D) Boxplots showing the distribution of ADAMTS8 expression in patients stratified by clinical stage, PAM50 subtype and DMFS time performance status.
Clinical Features of the Patients in TCGA and GSE20685 Datasets and Correlation of ADAMTS8 Expression in LN− Early-Stage BC Patients
| Feature | Subgroup | TCGA | GSE20685 | ||||
|---|---|---|---|---|---|---|---|
| Low (n=195) | High (n=195) | Low (n=66) | High (n=65) | ||||
| Age N(%) | <40 | 13(61.9) | 8(38.1) | 0.081 | 17(68.0) | 8(32.0) | 0.116 |
| 40–59 | 78(44.1) | 99(55.9) | 42(47.7) | 46(52.3) | |||
| ≥60 | 104(54.2) | 88(45.8) | 7(38.9) | 11(61.1) | |||
| Tumor size N(%) | T1 | 53(38.4) | 85(61.6) | 0.001 | 27(41.5) | 38(58.5) | 0.065 |
| T2 | 131(58.5) | 93(41.5) | 39(60.0) | 26(40.0) | |||
| T3 | 11(39.3) | 1760.7) | 0(0.00) | 1(100.0) | |||
| I | 53(38.4) | 85(56.3) | 27(41.5) | 38(58.5) | |||
| II | 142(56.3) | 110(43.7) | 39(59.1) | 27(40.9) | |||
| Basal | 53(62.4) | 32(37.6) | 18(72.0) | 7(28.0) | |||
| Her2 | 25(59.5) | 17(40.5) | 8(38.1) | 13(61.9) | |||
| LumA | 19(24.4) | 59(75.6) | 21(41.2) | 30(58.8) | |||
| LumB | 98(56.0) | 77(44.0) | 19(65.5) | 10(34.5) | |||
| Normal | 0(0.00) | 10(100.0) | 0(0.00) | 5(100.0) | |||
Note: ap values were derived from chi-square test. Bold figure note: this variable is statistically significant.
Figure 5Gene ontology and pathway enrichment analysis showed that ADAMTS8 may participate in the development and metastasis of IDC. GO and KEGG analyses revealed the biological function of ADAMTS8 in the TCGA dataset (A and C) and in the GSE20685 dataset (B and D). Pentagram marks indicate simultaneous enrichment of two datasets.
Figure 6ADAMTS8 is a potential prognostic biomarker for DMFS in real clinical samples of LNN early-stage BC patients. (A) qRT–PCR assays of the expression level of ADAMTS8 in BC tumor samples. (B) Kaplan–Meier curves of DMFS between the ADAMTS8 high and ADAMTS8 low expression groups.