Literature DB >> 35000237

Group depositions to the Protein Data Bank need adequate presentation and different archiving protocol.

Mariusz Jaskolski1,2, Alexander Wlodawer3, Zbigniew Dauter3, Wladek Minor4, Bernhard Rupp5,6.   

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Year:  2022        PMID： 35000237      PMCID： PMC8927872          DOI： 10.1002/pro.4271

Source DB:  PubMed          Journal:  Protein Sci        ISSN： 0961-8368            Impact factor:   6.725


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  12 in total

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2.  50 years of PBD: a catalyst in structural biology.

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3.  UCSF ChimeraX: Meeting modern challenges in visualization and analysis.

Authors:  Thomas D Goddard; Conrad C Huang; Elaine C Meng; Eric F Pettersen; Gregory S Couch; John H Morris; Thomas E Ferrin
Journal:  Protein Sci       Date:  2017-09-06       Impact factor: 6.725

4.  Molstack-Interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps.

Authors:  Przemyslaw J Porebski; Piotr Sroka; Heping Zheng; David R Cooper; Wladek Minor
Journal:  Protein Sci       Date:  2017-09-13       Impact factor: 6.725

5.  Group depositions to the Protein Data Bank need adequate presentation and different archiving protocol.

Authors:  Mariusz Jaskolski; Alexander Wlodawer; Zbigniew Dauter; Wladek Minor; Bernhard Rupp
Journal:  Protein Sci       Date:  2022-02-21       Impact factor: 6.725

6.  PDBsum: Structural summaries of PDB entries.

Authors:  Roman A Laskowski; Jagoda Jabłońska; Lukáš Pravda; Radka Svobodová Vařeková; Janet M Thornton
Journal:  Protein Sci       Date:  2017-10-27       Impact factor: 6.725

7.  The XChemExplorer graphical workflow tool for routine or large-scale protein-ligand structure determination.

Authors:  Tobias Krojer; Romain Talon; Nicholas Pearce; Patrick Collins; Alice Douangamath; Jose Brandao-Neto; Alexandre Dias; Brian Marsden; Frank von Delft
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-02-24       Impact factor: 7.652

8.  Current developments in Coot for macromolecular model building of Electron Cryo-microscopy and Crystallographic Data.

Authors:  Ana Casañal; Bernhard Lohkamp; Paul Emsley
Journal:  Protein Sci       Date:  2020-03-02       Impact factor: 6.725

9.  A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density.

Authors:  Nicholas M Pearce; Tobias Krojer; Anthony R Bradley; Patrick Collins; Radosław P Nowak; Romain Talon; Brian D Marsden; Sebastian Kelm; Jiye Shi; Charlotte M Deane; Frank von Delft
Journal:  Nat Commun       Date:  2017-04-24       Impact factor: 14.919

10.  Highly accurate protein structure prediction with AlphaFold.

Authors:  John Jumper; Richard Evans; Alexander Pritzel; Tim Green; Michael Figurnov; Olaf Ronneberger; Kathryn Tunyasuvunakool; Russ Bates; Augustin Žídek; Anna Potapenko; Alex Bridgland; Clemens Meyer; Simon A A Kohl; Andrew J Ballard; Andrew Cowie; Bernardino Romera-Paredes; Stanislav Nikolov; Rishub Jain; Demis Hassabis; Jonas Adler; Trevor Back; Stig Petersen; David Reiman; Ellen Clancy; Michal Zielinski; Martin Steinegger; Michalina Pacholska; Tamas Berghammer; Sebastian Bodenstein; David Silver; Oriol Vinyals; Andrew W Senior; Koray Kavukcuoglu; Pushmeet Kohli
Journal:  Nature       Date:  2021-07-15       Impact factor: 49.962
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  3 in total

1.  Group depositions to the Protein Data Bank need adequate presentation and different archiving protocol.

Authors:  Mariusz Jaskolski; Alexander Wlodawer; Zbigniew Dauter; Wladek Minor; Bernhard Rupp
Journal:  Protein Sci       Date:  2022-02-21       Impact factor: 6.725

2.  Structure-based inhibitor optimization for the Nsp3 Macrodomain of SARS-CoV-2.

Authors:  Stefan Gahbauer; Galen J Correy; Marion Schuller; Matteo P Ferla; Yagmur Umay Doruk; Moira Rachman; Taiasean Wu; Morgan Diolaiti; Siyi Wang; R Jeffrey Neitz; Daren Fearon; Dmytro Radchenko; Yurii Moroz; John J Irwin; Adam R Renslo; Jenny C Taylor; Jason E Gestwicki; Frank von Delft; Alan Ashworth; Ivan Ahel; Brian K Shoichet; James S Fraser
Journal:  bioRxiv       Date:  2022-06-28

3.  Of problems and opportunities-How to treat and how to not treat crystallographic fragment screening data.

Authors:  Manfred S Weiss; Jan Wollenhaupt; Galen J Correy; James S Fraser; Andreas Heine; Gerhard Klebe; Tobias Krojer; Marjolein Thunissen; Nicholas M Pearce
Journal:  Protein Sci       Date:  2022-09       Impact factor: 6.993
  3 in total

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