Literature DB >> 34997046

Identification of vaccine and drug targets in Shigella dysenteriae sd197 using reverse vaccinology approach.

Khurshid Jalal1, Tareq Abu-Izneid2, Kanwal Khan3, Muhammad Abbas4, Ajmal Hayat4, Sami Bawazeer5, Reaz Uddin6.   

Abstract

Shigellosis is characterized as diarrheal disease that causes a high mortality rate especially in children, elderly and immunocompromised patients. More recently, the World Health Organization advised safe vaccine designing against shigellosis due to the emergence of Shigella dysenteriae resistant strains. Therefore, the aim of this study is to identify novel drug targets as well as the design of the potential vaccine candidates and chimeric vaccine models against Shigella dysenteriae. A computational based Reverse Vaccinology along with subtractive genomics analysis is one of the robust approaches used for the prioritization of drug targets and vaccine candidates through direct screening of genome sequence assemblies. Herein, a successfully designed peptide-based novel highly antigenic chimeric vaccine candidate against Shigella dysenteriae sd197 strain is proposed. The study resulted in six epitopes from outer membrane WP_000188255.1 (Fe (3+) dicitrate transport protein FecA) that ultimately leads to the construction of twelve vaccine models. Moreover, V9 construct was found to be highly immunogenic, non-toxic, non-allergenic, highly antigenic, and most stable in terms of molecular docking and simulation studies against six HLAs and TLRS/MD complex. So far, this protein and multiepitope have never been characterized as vaccine targets against Shigella dysenteriae. The current study proposed that V9 could be a significant vaccine candidate against shigellosis and to ascertain that further experiments may be applied by the scientific community focused on shigellosis.
© 2022. The Author(s).

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Year:  2022        PMID: 34997046      PMCID: PMC8742002          DOI: 10.1038/s41598-021-03988-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  58 in total

Review 1.  Regulation of the FecI-type ECF sigma factor by transmembrane signalling.

Authors:  Volkmar Braun; Susanne Mahren; Monica Ogierman
Journal:  Curr Opin Microbiol       Date:  2003-04       Impact factor: 7.934

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide.

Authors:  E A Emini; J V Hughes; D S Perlow; J Boger
Journal:  J Virol       Date:  1985-09       Impact factor: 5.103

4.  Immune epitope database analysis resource.

Authors:  Yohan Kim; Julia Ponomarenko; Zhanyang Zhu; Dorjee Tamang; Peng Wang; Jason Greenbaum; Claus Lundegaard; Alessandro Sette; Ole Lund; Philip E Bourne; Morten Nielsen; Bjoern Peters
Journal:  Nucleic Acids Res       Date:  2012-05-18       Impact factor: 16.971

5.  ElliPro: a new structure-based tool for the prediction of antibody epitopes.

Authors:  Julia Ponomarenko; Huynh-Hoa Bui; Wei Li; Nicholas Fusseder; Philip E Bourne; Alessandro Sette; Bjoern Peters
Journal:  BMC Bioinformatics       Date:  2008-12-02       Impact factor: 3.169

6.  VFDB 2019: a comparative pathogenomic platform with an interactive web interface.

Authors:  Bo Liu; Dandan Zheng; Qi Jin; Lihong Chen; Jian Yang
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

7.  Editorial: Reverse Vaccinology.

Authors:  Richard Moxon; Pedro A Reche; Rino Rappuoli
Journal:  Front Immunol       Date:  2019-12-03       Impact factor: 7.561

8.  Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.

Authors:  Huynh-Hoa Bui; John Sidney; Wei Li; Nicolas Fusseder; Alessandro Sette
Journal:  BMC Bioinformatics       Date:  2007-09-26       Impact factor: 3.169

9.  KAAS: an automatic genome annotation and pathway reconstruction server.

Authors:  Yuki Moriya; Masumi Itoh; Shujiro Okuda; Akiyasu C Yoshizawa; Minoru Kanehisa
Journal:  Nucleic Acids Res       Date:  2007-05-25       Impact factor: 16.971

10.  Subtractive proteomics to identify novel drug targets and reverse vaccinology for the development of chimeric vaccine against Acinetobacter baumannii.

Authors:  Vandana Solanki; Vishvanath Tiwari
Journal:  Sci Rep       Date:  2018-06-13       Impact factor: 4.379

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  2 in total

1.  Investigation of Antibiotic Resistome in Hospital Wastewater during the COVID-19 Pandemic: Is the Initial Phase of the Pandemic Contributing to Antimicrobial Resistance?

Authors:  Changzhi Wang; David Mantilla-Calderon; Yanghui Xiong; Mohsen Alkahtani; Yasir M Bashawri; Hamed Al Qarni; Pei-Ying Hong
Journal:  Environ Sci Technol       Date:  2022-08-02       Impact factor: 11.357

2.  Subtractive genomics profiling for potential drug targets identification against Moraxella catarrhalis.

Authors:  Bilal Ashraf; Nimrah Atiq; Kanwal Khan; Abdul Wadood; Reaz Uddin
Journal:  PLoS One       Date:  2022-08-25       Impact factor: 3.752

  2 in total

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