Literature DB >> 34985757

Detection of Norovirus Using Paper-Based Cell-Free Systems.

Kaiyue Wu1,2, Alexander A Green3.   

Abstract

Norovirus infections are the leading cause of foodborne illness and human gastroenteritis, afflicting hundreds of millions of people each year. Molecular assays with the capacity to detect norovirus without expensive equipment and with high sensitivity and specificity represent useful tools to track and contain future outbreaks. Here we describe how norovirus can be detected in low-cost paper-based cell-free reactions. These assays combine freeze-dried, thermostable cell-free transcription-translation reactions with toehold switch riboregulators designed to target the norovirus genome, enabling convenient colorimetric assay readouts. Coupling cell-free reactions with synbody-based viral enrichment and isothermal amplification enables detection of norovirus from clinical samples down to concentrations as low as 270 zM. These diagnostic tests are promising assays for confronting norovirus outbreaks and can be adapted to a variety of other human pathogens.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Cell-free systems; In vitro protein synthesis; Isothermal amplification; NASBA; Norovirus detection; Paper-based diagnostics; Riboregulators; Toehold switches

Mesh:

Year:  2022        PMID: 34985757     DOI: 10.1007/978-1-0716-1998-8_23

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Comparison of five commercially available immunochromatographic tests for the detection of norovirus in faecal specimens.

Authors:  K Vyas; C Atkinson; D A Clark; D Irish
Journal:  J Hosp Infect       Date:  2015-07-08       Impact factor: 3.926

2.  Norovirus illness is a global problem: emergence and spread of norovirus GII.4 variants, 2001-2007.

Authors:  J Joukje Siebenga; Harry Vennema; Du-Ping Zheng; Jan Vinjé; Bonita E Lee; Xiao-Li Pang; Eric C M Ho; Wilina Lim; Avinash Choudekar; Shobha Broor; Tamar Halperin; Nassar B G Rasool; Joanne Hewitt; Gail E Greening; Miao Jin; Zhao-Jun Duan; Yalda Lucero; Miguel O'Ryan; Marina Hoehne; Eckart Schreier; Rodney M Ratcliff; Peter A White; Nobuhiro Iritani; Gábor Reuter; Marion Koopmans
Journal:  J Infect Dis       Date:  2009-09-01       Impact factor: 5.226

3.  Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.

Authors:  Keith Pardee; Alexander A Green; Melissa K Takahashi; Dana Braff; Guillaume Lambert; Jeong Wook Lee; Tom Ferrante; Duo Ma; Nina Donghia; Melina Fan; Nichole M Daringer; Irene Bosch; Dawn M Dudley; David H O'Connor; Lee Gehrke; James J Collins
Journal:  Cell       Date:  2016-05-06       Impact factor: 41.582

4.  Toehold switches: de-novo-designed regulators of gene expression.

Authors:  Alexander A Green; Pamela A Silver; James J Collins; Peng Yin
Journal:  Cell       Date:  2014-10-23       Impact factor: 41.582

5.  Paper-based synthetic gene networks.

Authors:  Keith Pardee; Alexander A Green; Tom Ferrante; D Ewen Cameron; Ajay DaleyKeyser; Peng Yin; James J Collins
Journal:  Cell       Date:  2014-10-23       Impact factor: 41.582

6.  Rapid diagnosis of acute norovirus-associated gastroenteritis: evaluation of the Xpert Norovirus assay and its implementation as a 24/7 service in three hospitals in Jönköping County, Sweden.

Authors:  A J Henningsson; A Nilsson Bowers; J Nordgren; M Quttineh; A Matussek; S Haglund
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2017-05-24       Impact factor: 3.267

7.  Complex cellular logic computation using ribocomputing devices.

Authors:  Alexander A Green; Jongmin Kim; Duo Ma; Pamela A Silver; James J Collins; Peng Yin
Journal:  Nature       Date:  2017-07-26       Impact factor: 49.962

8.  Precise and Programmable Detection of Mutations Using Ultraspecific Riboregulators.

Authors:  Fan Hong; Duo Ma; Kaiyue Wu; Lida A Mina; Rebecca C Luiten; Yan Liu; Hao Yan; Alexander A Green
Journal:  Cell       Date:  2020-02-27       Impact factor: 41.582

9.  De novo-designed translation-repressing riboregulators for multi-input cellular logic.

Authors:  Jongmin Kim; Yu Zhou; Paul D Carlson; Mario Teichmann; Soma Chaudhary; Friedrich C Simmel; Pamela A Silver; James J Collins; Julius B Lucks; Peng Yin; Alexander A Green
Journal:  Nat Chem Biol       Date:  2019-11-04       Impact factor: 15.040

10.  Global Economic Burden of Norovirus Gastroenteritis.

Authors:  Sarah M Bartsch; Benjamin A Lopman; Sachiko Ozawa; Aron J Hall; Bruce Y Lee
Journal:  PLoS One       Date:  2016-04-26       Impact factor: 3.240

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