Literature DB >> 34983970

Engineering synthetic RNA devices for cell control.

Peter B Dykstra1, Matias Kaplan1, Christina D Smolke2,3.   

Abstract

The versatility of RNA in sensing and interacting with small molecules, proteins and other nucleic acids while encoding genetic instructions for protein translation makes it a powerful substrate for engineering biological systems. RNA devices integrate cellular information sensing, processing and actuation of specific signals into defined functions and have yielded programmable biological systems and novel therapeutics of increasing sophistication. However, challenges centred on expanding the range of analytes that can be sensed and adding new mechanisms of action have hindered the full realization of the field's promise. Here, we describe recent advances that address these limitations and point to a significant maturation of synthetic RNA-based devices.
© 2022. Springer Nature Limited.

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Year:  2022        PMID: 34983970      PMCID: PMC9554294          DOI: 10.1038/s41576-021-00436-7

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   59.581


  145 in total

Review 1.  RNA thermometers.

Authors:  Franz Narberhaus; Torsten Waldminghaus; Saheli Chowdhury
Journal:  FEMS Microbiol Rev       Date:  2006-01       Impact factor: 16.408

2.  Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability.

Authors:  Katalin Karikó; Hiromi Muramatsu; Frank A Welsh; János Ludwig; Hiroki Kato; Shizuo Akira; Drew Weissman
Journal:  Mol Ther       Date:  2008-09-16       Impact factor: 11.454

3.  Versatile RNA-sensing transcriptional regulators for engineering genetic networks.

Authors:  Julius B Lucks; Lei Qi; Vivek K Mutalik; Denise Wang; Adam P Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-09       Impact factor: 11.205

4.  Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP.

Authors:  M Koizumi; G A Soukup; J N Kerr; R R Breaker
Journal:  Nat Struct Biol       Date:  1999-11

Review 5.  RNA Splicing by the Spliceosome.

Authors:  Max E Wilkinson; Clément Charenton; Kiyoshi Nagai
Journal:  Annu Rev Biochem       Date:  2019-12-03       Impact factor: 23.643

6.  Engineered allosteric ribozymes that sense the bacterial second messenger cyclic diguanosyl 5'-monophosphate.

Authors:  Hongzhou Gu; Kazuhiro Furukawa; Ronald R Breaker
Journal:  Anal Chem       Date:  2012-05-21       Impact factor: 6.986

Review 7.  Circular RNA in cardiovascular disease.

Authors:  M-Ashraf Altesha; Tiffany Ni; Afaan Khan; Kexiang Liu; Xiufen Zheng
Journal:  J Cell Physiol       Date:  2018-10-20       Impact factor: 6.384

Review 8.  Circular RNA and Alzheimer's Disease.

Authors:  Rumana Akhter
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

9.  Aptazyme-embedded guide RNAs enable ligand-responsive genome editing and transcriptional activation.

Authors:  Weixin Tang; Johnny H Hu; David R Liu
Journal:  Nat Commun       Date:  2017-06-28       Impact factor: 14.919

10.  Targeted suicide gene therapy for liver cancer based on ribozyme-mediated RNA replacement through post-transcriptional regulation.

Authors:  Seung Ryul Han; Chang Ho Lee; Ji Young Im; Ju Hyun Kim; Ji Hyun Kim; Sung Jin Kim; Young Woo Cho; Eunkyung Kim; Youngah Kim; Ji-Ho Ryu; Mi Ha Ju; Jin Sook Jeong; Seong-Wook Lee
Journal:  Mol Ther Nucleic Acids       Date:  2020-10-31       Impact factor: 8.886

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  3 in total

1.  Synthetic introns enable highly specific targeting of cancer cells.

Authors: 
Journal:  Nat Biotechnol       Date:  2022-07       Impact factor: 68.164

2.  Predicting higher-order mutational effects in an RNA enzyme by machine learning of high-throughput experimental data.

Authors:  James D Beck; Jessica M Roberts; Joey M Kitzhaber; Ashlyn Trapp; Edoardo Serra; Francesca Spezzano; Eric J Hayden
Journal:  Front Mol Biosci       Date:  2022-08-15

3.  Modulating myoblast differentiation with RNA-based controllers.

Authors:  Peter B Dykstra; Thomas A Rando; Christina D Smolke
Journal:  PLoS One       Date:  2022-09-27       Impact factor: 3.752

  3 in total

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