| Literature DB >> 34981673 |
Jurek Schultz1, Ines Freibothe1, Michael Haase1, Patrick Glatte1, Gustavo Barreton2, Andreas Ziegler3,4,5, Heike Görgens6, Guido Fitze1.
Abstract
BACKGROUND: In addition to patient-related systemic factors directing the immune response, the pathomechanisms of appendicitis (AP) might also include insufficient drainage leading to inflammation caused by decreased peristalsis. Genetic predisposition accounts for 30%-50% of AP. M. Hirschsprung (HSCR), also characterized by disturbed peristalsis, is associated with variants in the RET proto-oncogene. We thus hypothesized that RET variants contribute to the etiology of AP.Entities:
Keywords: appendicitis; general surgery; genetic association studies; pediatrics; proto-oncogene protein ret
Mesh:
Substances:
Year: 2022 PMID: 34981673 PMCID: PMC8830807 DOI: 10.1002/mgg3.1864
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.473
Distribution of c.135A>G genotypes among the different histopathological types of appendicitis in comparison with normal controls
| Exon 2 c.135 | Histopathological evaluation | Normal controls ( | |||
|---|---|---|---|---|---|
| Non‐gangrenous ( | Gangrenous ( | Perforated ( | Total ( | ||
| GG | 67 (54.9%) | 58 (50.4%) | 15 (55.6%) | 140 (53.0%) | 69 (52.7%) |
| GA | 50 (41.0%) | 46 (40.0%) | 7 (25.9%) | 103 (39.0%) | 55 (42.0%) |
| AA | 5 (4.1%) | 11 (9.6%) | 5 (18.5%) | 21 (8.0%) | 7 (5.3%) |
Distribution of c.135A>G genotypes among the different histopathological types of appendicitis in relation to the family history for appendicitis
| Histopathology | Familial history for appendectomy and c.135G>A genotypes | |||||||
|---|---|---|---|---|---|---|---|---|
| Positive ( | Negative ( | |||||||
| GG | GA | AA | ∑ | GG | GA | AA | ∑ | |
| Non‐GAP | 22 | 17 | 2 | 37.3% | 20 | 16 | 0 | 49.3% |
| GAP | 23 | 28 | 6 | 51.8% | 20 | 8 | 3 | 40.0% |
| Perforated | 7 | 3 | 2 | 10.9% | 5 | 1 | 2 | 10.7% |
| 47.3% | 43.6% | 9.1% | 60.0% | 33.3% | 6.7% | |||
Characterization of six RET germline mutations identified in 46 patients with GAP (aminoacid change according to NP_066124.1), transmission of these mutations, the family history for appendicitis, and the analysis which c.135G>A allele harbors the mutation
| No. | Exon | Mutation | Nucleotide change (NC_000010.11) | Type of mutation | Histological evaluation of appendix | Family history for appendicitis | Transmission of the mutation | Mutated c.135G>A allele |
|---|---|---|---|---|---|---|---|---|
| 1 | 3 |
Arg 163 Trp |
CGG → TGG g.43102491C>T (rs371153966) | Missense | Gangrenous | Positive (father) | Paternal | A |
| 2 | 7 |
Pro 476 Thr |
CCC → ACC g.43111369C>A | Missense | Gangrenous | Father, mother, brother | De novo | G |
| 3 | 11 |
Ser 649 Leu |
TCG → TTG g.43114546C>T (rs148935214) | Missense | Gangrenous | n.d. | n.d. | n.d. |
| 4 | 13 |
Asn 777 Ser |
AAC → AGC g.43118418A>G (rs377767415) | Missense | Gangrenous | 2 Sisters | Maternal | A |
| 5 | 18 |
Pro 996 = |
CCG → CCA g.43124931G>A (rs145798106) | Silent | Gangrenous | Negative | Paternal | A |
| 6 | 19 |
Arg 1050 * |
CGA → TGA g.43126683C>T (rs767479170 but only C>G recorded so far) | Nonsense (>STOP) | Perforated | Father | Maternal | A |
Abbreviation: n.d., not defined.
Genotype distribution (percentages in parenthesis) of eight exonic RET proto‐oncogene variants of 46 GAP patients compared to the control population (positions according to reference genome NM_020975.6)
| SNP‐position | Genotype | Patients ( | Controls ( | Cochran–Armitage trend test | ||
|---|---|---|---|---|---|---|
| OR | CI | ex. | ||||
| c.135A>G | GG | 21 (45.70%) | 25 (53.20%) | |||
| rs1800858 | GA | 18 (39.10%) | 20 (42.60%) | 0.6512 | 0.325–1.271 | |
| AA | 7 (15.20%) | 2 (4.30%) | 0.4241 | 0.106–1.615 | 0.2104 | |
| c.375C>A | CC | 43 (93.50%) | 46 (97.90%) | |||
| rs1800859 | CA | 3 (6.50%) | 1 (2.10%) | 0.3152 | 0.006–4.097 | |
| AA | 0 (0.00%) | 0 (0.00%) | 0.3613 | |||
| c.1296A>G | GG | 23 (50.00%) | 16 (34.00%) | |||
| rs1800860 | GA | 17 (37.00%) | 26 (55.30%) | 1.353 | 0.704–2.649 | |
| AA | 6 (13.00%) | 5 (10.60%) | 1.831 | 0.495–7.018 | 0.3576 | |
| c.2071G>A | GG | 27 (58.70%) | 28 (59.60%) | |||
| rs1799939 | GA | 18 (39.10%) | 16 (34.00%) | 1.104 | 0.514–2.388 | |
| AA | 1 (2.20%) | 3 (6.40%) | 1.219 | 0.265–5.703 | 0.8591 | |
| c.2307G>T | TT) | 23 (50.00%) | 27 (57.40%) | |||
| rs1800861 | TG | 21 (45.70%) | 16 (34.00%) | 0.9177 | 0.447–1.874 | |
| GG | 2 (4.30%) | 4 (8.50%) | 0.8421 | 0.200–3.513 | 0.8675 | |
| c.2508C>T | CC | 43 (93.50%) | 45 (95.70%) | |||
| rs1800862 | CT | 3 (6.50%) | 2 (4.30%) | 0.6401 | 0.051–5.873 | |
| TT | 0 (0.00%) | 0 (0.00%) | 0.6771 | |||
| c.2712C>G | CC | 26 (56.50%) | 28 (59.60%) | |||
| rs1800863 | CG | 19 (41.30%) | 16 (34.00%) | 1.035 | 0.482–2.228 | |
| GG | 1 (2.20%) | 3 (6.40%) | 1.071 | 0.232–4.965 | 1 | |
| c.2944C>T | CC | 45 (97.80%) | 42 (89.40%) | |||
| rs17158558 | CT | 1 (2.20%) | 5 (10.60%) | 5.275 | 0.557–258.9 | |
| TT | 0 (0.00%) | 0 (0.00%) | 0.2035 | |||
Genotype distribution (percentages in parenthesis) of seven intronic RET proto‐oncogene variants of 46 GAP patients compared to the control population (nucleotide positions according to NC_000010.11)
| SNP position | Genotype | Patients ( | Controls ( | Cochran–Armitage trend test | ||
|---|---|---|---|---|---|---|
| OR | CI | ex. | ||||
| g.43100731 | GG | 30 (65.20%) | 22 (46.80%) | |||
| GA | 15 (32.60%) | 22 (46.80%) | 1.992 | 0.913–4.548 | ||
| AA | 1 (2.20%) | 2 (6.40%) | 3.969 | 0.833–20.69 | 0.0745 | |
| g.43105241 | AA | 24 (52.20%) | 13 (27.70%) | |||
| AG | 16 (34.80%) | 24 (51.10%) | 1.91 | 1.026–3.689 | ||
| GG | 6 (13.00%) | 10 (21.30%) | 3.65 | 1.052–13.61 | 0.0317 | |
| g.43116778 | CC | 21 (45.70%) | 27 (57.40%) | |||
| C>T | CT | 22 (47.80%) | 18 (38.30%) | 0.6739 | 0.314–1.412 | |
| rs760466 | TT | 3 (6.50%) | 2 (4.30%) | 0.4541 | 0.098–1.993 | 0.301 |
| g.43120057 | GG | 34 (73.90%) | 30 (63.80%) | |||
| G>A | GA | 11 (23.90%) | 15 (31.90%) | 1.525 | 0.666–3.643 | |
| rs2472737 | AA | 1 (2.20%) | 2 (4.30%) | 2.325 | 0.443–13.27 | 0.34 |
| g.43126769 | CC | 27 (58.70%) | 28 (59.60%) | |||
| C>T | CT | 17 (37.00%) | 17 (36.20%) | 0.9716 | 0.451–2.090 | |
| rs2075912 | TT | 2 (4.30%) | 2 (4.30%) | 0.944 | 0.204–4.368 | 1 |
| g.43128364 | CC | 3411 (73.90%) | 29 (61.70%) | |||
| C>T | CT | 1 (23.90%) | 16 (34.00%) | 1.636 | 0.715–3.921 | |
| rs17028 | TT | −2.20%) | 2 (4.30%) | 2.678 | 0.512–15.38 | 0.2542 |
| g.43129775 | AA | 26 (56.50%) | 27 (57.40%) | |||
| A>G | AG | 17 (37.00%) | 18 (38.30%) | 0.9154 | 0.436–1.912 | |
| rs2742241 | GG | 3 (6.50%) | 2 (4.30%) | 0.837 | 0.190–3.656 | 0.8639 |