Literature DB >> 34974473

Evaluation of SAMBA II: A Qualitative and Semiquantitative HIV Point-of-Care Nucleic Acid Test.

Lauren R Violette1,2, Andy Cornelius-Hudson1, Madison Snidarich1, Lisa A Niemann1, Sonny Michael Assennato3, Allyson Ritchie3, Neha Goel3, Pollyanna R Chavez4, Steven F Ethridge4, David A Katz5, Helen Lee3, Kevin P Delaney4, Joanne D Stekler1,2,5.   

Abstract

BACKGROUND: Point-of-care (POC) nucleic acid tests (NATs) have potential to diagnose acute HIV infection and monitor persons taking pre-exposure prophylaxis or antiretroviral therapy (ART). POC NATs have not yet been evaluated in the US.
METHODS: From June 2018-March 2019, we conducted a cross-sectional evaluation of the Simple Amplification-Based Assay version II (SAMBA II) POC NAT. People with HIV (PWH) and persons testing for HIV were tested with the SAMBA II qualitative (Qual) whole blood (WB) test. From April-September 2019, the Qual test was used on persons who were ART-naive, and SAMBA II Semi-quantitative (Semi-Q) WB was used with ART-experienced PWH. Both were performed on unprocessed venipuncture (VP) and, when indicated by protocol, fingerstick (FS) WB and plasma. SAMBA results were compared with Abbott RealTime HIV-1 polymerase chain reaction results on plasma. We calculated sensitivity, specificity, and concordance between tests.
RESULTS: SAMBA was used in 330 visits among 280 participants: 202 (61.2%) visits from PWH, and 128 (38.8%) from HIV-negative persons. Qual test sensitivity with ART-naive participants was 91.4% [32/35, 95% confidence interval (CI): 77.6% to 97.0%] using VP WB and 100% (27/27, 95% CI: 87.5% to 100%) using FS WB. Specificity was 100% using both specimen types. Concordance between the gold standard and Semi-Q at 1000 copies/mL among PWH on ART was 97.7% (86/88, 95% CI: 92.1% to 99.4%) and 100% (30/30, 95% CI: 88.7% to 100%) using VP and FS WB, respectively.
CONCLUSIONS: The SAMBA II POC NATs showed high sensitivity, specificity, and concordance with the gold standard assay, indicating its potential use in diagnostics and monitoring. Future work will evaluate POC NAT implementation in the US.
Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.

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Year:  2022        PMID: 34974473      PMCID: PMC9058199          DOI: 10.1097/QAI.0000000000002902

Source DB:  PubMed          Journal:  J Acquir Immune Defic Syndr        ISSN: 1525-4135            Impact factor:   3.771


  54 in total

1.  Immunological and virological impact of highly active antiretroviral therapy initiated during acute HIV-1 infection.

Authors:  Hendrik Streeck; Heiko Jessen; Galit Alter; Nickolas Teigen; Mike T Waring; Arne Jessen; Ingrid Stahmer; Jan van Lunzen; Mathias Lichterfeld; Xiaojiang Gao; Todd M Allen; Mary Carrington; Bruce D Walker; Juergen K Rockstroh; Marcus Altfeld
Journal:  J Infect Dis       Date:  2006-08-15       Impact factor: 5.226

Review 2.  Rapid HIV testing. Wait time reduced from days to minutes.

Authors:  Patrick A Keenan; Joseph M Keenan; Bernard M Branson
Journal:  Postgrad Med       Date:  2005-03       Impact factor: 3.840

3.  HIV-1 viral load measurement in venous blood and fingerprick blood using Abbott RealTime HIV-1 DBS assay.

Authors:  Ning Tang; Vihanga Pahalawatta; Andrea Frank; Zowie Bagley; Raquel Viana; John Lampinen; Gregor Leckie; Shihai Huang; Klara Abravaya; Carole L Wallis
Journal:  J Clin Virol       Date:  2017-05-13       Impact factor: 3.168

4.  Use of Point-of-Care Nucleic Acid Tests Beyond Early Infant Diagnosis of HIV: A Retrospective Case Review in Lesotho.

Authors:  Kenneth Macneal; Vincent Tukei; Emma Sacks; Mafusi Mokone; Lehlohonolo Makoti; Esther Tumbare; Tebello Samosamo; Tsietso Mots'oane; Jean-Francois Lemaire; Jennifer Cohn
Journal:  J Acquir Immune Defic Syndr       Date:  2020-07-01       Impact factor: 3.731

5.  Effect of treatment, during primary infection, on establishment and clearance of cellular reservoirs of HIV-1.

Authors:  Matthew C Strain; Susan J Little; Eric S Daar; Diane V Havlir; Huldrych F Gunthard; Ruby Y Lam; Otto A Daly; Juin Nguyen; Caroline C Ignacio; Celsa A Spina; Douglas D Richman; Joseph K Wong
Journal:  J Infect Dis       Date:  2005-03-29       Impact factor: 5.226

6.  HIV in body fluids during primary HIV infection: implications for pathogenesis, treatment and public health.

Authors:  C D Pilcher; D C Shugars; S A Fiscus; W C Miller; P Menezes; J Giner; B Dean; K Robertson; C E Hart; J L Lennox; J J Eron ; C B Hicks
Journal:  AIDS       Date:  2001-05-04       Impact factor: 4.177

7.  The role of acute and early HIV infection in the spread of HIV and implications for transmission prevention strategies in Lilongwe, Malawi: a modelling study.

Authors:  Kimberly A Powers; Azra C Ghani; William C Miller; Irving F Hoffman; Audrey E Pettifor; Gift Kamanga; Francis Ea Martinson; Myron S Cohen
Journal:  Lancet       Date:  2011-07-16       Impact factor: 79.321

8.  HIV testing in a high-incidence population: is antibody testing alone good enough?

Authors:  Joanne D Stekler; Paul D Swenson; Robert W Coombs; Joan Dragavon; Katherine K Thomas; Catherine A Brennan; Sushil G Devare; Robert W Wood; Matthew R Golden
Journal:  Clin Infect Dis       Date:  2009-08-01       Impact factor: 9.079

9.  Relative accuracy of serum, whole blood, and oral fluid HIV tests among Seattle men who have sex with men.

Authors:  Joanne D Stekler; Joshua D O'Neal; Aric Lane; Fred Swanson; Janine Maenza; Claire E Stevens; Robert W Coombs; Joan A Dragavon; Paul D Swenson; Matthew R Golden; Bernard M Branson
Journal:  J Clin Virol       Date:  2013-12       Impact factor: 3.168

10.  Antiretroviral Therapy for the Prevention of HIV-1 Transmission.

Authors:  Myron S Cohen; Ying Q Chen; Marybeth McCauley; Theresa Gamble; Mina C Hosseinipour; Nagalingeswaran Kumarasamy; James G Hakim; Johnstone Kumwenda; Beatriz Grinsztejn; Jose H S Pilotto; Sheela V Godbole; Suwat Chariyalertsak; Breno R Santos; Kenneth H Mayer; Irving F Hoffman; Susan H Eshleman; Estelle Piwowar-Manning; Leslie Cottle; Xinyi C Zhang; Joseph Makhema; Lisa A Mills; Ravindre Panchia; Sharlaa Faesen; Joseph Eron; Joel Gallant; Diane Havlir; Susan Swindells; Vanessa Elharrar; David Burns; Taha E Taha; Karin Nielsen-Saines; David D Celentano; Max Essex; Sarah E Hudelson; Andrew D Redd; Thomas R Fleming
Journal:  N Engl J Med       Date:  2016-07-18       Impact factor: 91.245

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