| Literature DB >> 34971557 |
Ming Ding1, Shi-Yu Pan2, Jing Huang1, Cheng Yuan1, Qiang Zhang1, Xiao-Li Zhu1, Yan Cai2.
Abstract
OBJECTIVE: To explore the feasibility of using random forest (RF) machine learning algorithm in assessing normal and malignant peripheral pulmonary nodules based on in vivo endobronchial optical coherence tomography (EB-OCT).Entities:
Mesh:
Year: 2021 PMID: 34971557 PMCID: PMC8719667 DOI: 10.1371/journal.pone.0260600
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographics of the patients.
| No. | Gender | Age | Height (cm) | Weight (kg) | Years of smoking | Site of lesion | Size (cm) | CT features | Methods for diagnosis | Pathological results |
|---|---|---|---|---|---|---|---|---|---|---|
| 1. | Male | 64 | 168 | 58 | RB6 | 1.7 | SPN | TBLB | Inflammation | |
| 2. | Male | 53 | 170 | 68 | 30 | RB9 | 1.2 | SPN (GGO) | TBLB+VATS | Adenocarcinoma |
| 3. | Male | 67 | 170 | 66 | 40 | LB8 | 3.0 | Mass (Solitary) | TBLB | Squamous cell carcinoma |
| 4. | Male | 64 | 171 | 64 | 20 | RB5 | 3.0 | SPN (GGO) | TBLB+VATS | Adenocarcinoma |
| 5. | Female | 57 | 159 | 60 | RB2 | 2.9 | Mass (Solitary) | TBLB+VATS | Adenocarcinoma | |
| 6. | Female | 65 | 156 | 56 | RB3 | 3.7 | Mass (Solitary) | TBLB | Organizing pneumonia | |
| 7. | Female | 71 | 155 | 65 | LB3 | 4.1 | Mass (Solitary) | TBLB | Organizing pneumonia | |
| 8. | Male | 81 | 174 | 76 | 30 | RB7 | 3.7 | Mass (Solitary) | TBLB+CT guided percutaneous biopsy | Organizing pneumonia |
| 9. | Male | 76 | 170 | 61 | RB3 | 5.3 | Mass (Solitary) | TBLB | Inflammation | |
| 10. | Male | 58 | 172 | 62 | 30 | RB3 | 3.0 | SPN | TBLB+VATS | Organizing pneumonia |
| 11. | Male | 62 | 171 | 71.5 | LB9 | 5.1 | Mass (Solitary) | TBLB | Organizing pneumonia | |
| 12. | Female | 53 | 155 | 53 | RB5 | 1.6 | SPN (GGO) | TBLB | Adenocarcinoma | |
| 13. | Male | 73 | 176 | 71 | 40 | LB3 | 3.0 | Mass (Solitary) | TBLB | Inflammation |
| 14. | Female | 58 | 163 | 56.5 | RB6 | 1.2 | SPN (GGO) | TBLB+VATS | Adenocarcinoma | |
| 15. | Male | 77 | 174.5 | 63 | RB7 | 2.8 | SPN | TBLB+VATS | Adenocarcinoma | |
| 16. | Male | 50 | 172 | 67 | 30 | LB1 | 1.8 | SPN (GGO) | TBLB | Inflammation |
| 17. | Male | 71 | 169 | 61.5 | 20 | RB1 | 2.9 | Mass (Solitary) | TBLB | Adenocarcinoma |
| 18. | Male | 62 | 171 | 55 | 30 | RB1 | 2.4 | SPN | TBLB+VATS | Organizing pneumonia |
| 19. | Female | 69 | 156 | 62 | RB3 | 2.9 | SPN | TBLB | Adenocarcinoma | |
| 20. | Female | 78 | 155 | 47.5 | LB1 | 2.0 | SPN | TBLB | Inflammation | |
| 21. | Male | 53 | 169 | 67.5 | RB3 | 2.0 | SPN | TBLB | Inflammation | |
| 22. | Male | 65 | 177 | 59.5 | 30 | LB1 | 2.2 | SPN | TBLB | Inflammation |
| 23. | Male | 72 | 171 | 70 | 30 | LB1 | 1.5 | SPN | TBLB | Small cell lung cancer |
| 24. | Female | 79 | 156 | 55 | LB1 | 2.3 | SPN | TBLB | Adenocarcinoma | |
| 25. | Female | 65 | 158 | 64 | LB1 | 2.3 | SPN | TBLB | Adenocarcinoma | |
| 26. | Female | 85 | 155 | 43 | RB3 | 2.7 | SPN | TBLB | Adenocarcinoma | |
| 27. | Female | 65 | 162 | 62 | RB3 | 2.2 | SPN | TBLB+VATS | Adenocarcinoma | |
| 28. | Male | 34 | 171 | 60 | RB9 | 2.6 | SPN | TBLB | Inflammation | |
| 29. | Male | 65 | 165 | 52.5 | LB1 | 3.0 | SPN | TBLB | Inflammation | |
| 30. | Male | 37 | 173 | 65 | RB4 | 1.8 | SPN | TBLB | Inflammation | |
| 31. | Male | 54 | 165 | 70 | 30 | LB1 | 1.6 | SPN | TBLB+CT guided percutaneous biopsy | Adenocarcinoma |
SPN: Solitary pulmonary nodule.
TBLB: Transbronchial lung biopsy.
VATS: Video-assisted thoracic surgery.
GGO: Ground glass opacity pulmonary nodule.
Right upper lobe: Apical segment: RB1; Posterior segment: RB2; Anterior segment: RB3.
Right middle lobe: Lateral segment: RB4; Medial segment: RB5.
Right lower lobe: Superior segment: RB6; Medial basal segment: RB7; Anterior basal segment: RB8; Lateral basal segment: RB9; Posterior basal segment: RB10.
Left upper lobe: Apical segment: LB1; Posterior segment: LB2; Anterior segment: LB3; Superior lingula segment: LB4; Inferior lingula segment: LB5.
Left lower lobe: Superior segment: LB6; Medial basal segment: LB7; Anterior basal segment: LB8; Lateral basal segment: LB9; Posterior basal segment: LB10.
Attenuation coefficient and image features of normal and malignant airway tissues with significant p-values.
| Features | Normal | Malignant | P Value | ||
|---|---|---|---|---|---|
|
| Attenuation Coefficient | 0.055±0.018 | 0.050±0.019 | P = 0.044 | |
|
| Statistical Features | Mean | 19.015±2.907 | 16.883±1.444 | P = 0.022 |
| Variance | 7.347±3.301 | 4.683±2.347 | P = 0.024 | ||
| Standard Deviation | 27.741±2.650 | 25.044±1.113 | P = 0.002 | ||
| Kurtosis | 7.667±1.224 | 6.530±0.932 | P = 0.012 | ||
| Fractal Dimension Texture Analysis | H2 | 0.268±0.021 | 0.255±0.010 | P = 0.046 | |
| Fourier Power Spectrum | Radial Sum | 22329.124±2636.736 | 20062.536±1094.022 | P = 0.007 | |
| Angular Sum | 7459.190±782.468 | 6654.144±751.668 | P = 0.014 | ||
| Spatial Gray Level Difference matrices | Mean of Angular Second Moment | 0.104±0.024 | 0.130±0.025 | P = 0.012 | |
| Range of Angular Second Moment | 0.008±0.002 | 0.010±0.002 | P = 0.031 | ||
| Mean of Contrast | 79.518±10.863 | 70.401±5.743 | P = 0.011 | ||
| Range of Contrast | 29.222±4.691 | 25.297±2.306 | P = 0.010 | ||
| Mean of Sum of Squares | 788.191±117.119 | 642.880±37.404 | P<0.001 | ||
| Range of Sum of Squares | 0.644±0.061 | 0.545±0.065 | P<0.001 | ||
| Mean of Inverse Difference Moment | 0.420±0.039 | 0.452±0.036 | P = 0.037 | ||
| Mean of Sum Average | 40.072±5.902 | 35.795±2.940 | P = 0.023 | ||
| Range of Sum Average | 0.052±0.008 | 0.046±0.004 | P = 0.021 | ||
| Mean of Sum Variance | 3073.25±459.95 | 2501.12±148.29 | P<0.001 | ||
| Range of Sum Variance | 26.649±4.642 | 23.116±2.357 | P = 0.018 | ||
| Range of Entropy | 0.128±0.013 | 0.120±0.008 | P = 0.049 | ||
| Mean of Difference Variance | 50.765±5.608 | 46.476±3.189 | P = 0.021 | ||
| Range of Difference Variance | 18.408±2.571 | 16.476±1.521 | P = 0.024 | ||
| Gray Level Difference matrices | Contrast | 79.509±10.862 | 70.392±5.742 | P = 0.011 | |
| Energy | 0.163±0.023 | 0.187±0.023 | P = 0.017 | ||
| Mean | 5.273±0.633 | 4.809±0.387 | P = 0.029 | ||
| Neighborhood Gray Tone Difference Matrix | Contrast | 0.490±0.101 | 0.401±0.054 | P = 0.008 | |
| Complexity | 42023.943±4392.033 | 36220.977±2731.785 | P<0.001 | ||
| Statistical Feature Matrix | coarseness | 12.196±1.288 | 13.486±1.116 | P = 0.011 | |
| Laws Texture Energy Measures | LL | 109129.317±10433.990 | 98313.561±4480.171 | P = 0.002 | |
| LE | 6658.034±820.816 | 5960.603±406.741 | P = 0.009 | ||
Image features of normal, malignant and inflammatory airway tissues with significant p-values.
| Features | Normal | Malignant | Inflammatory | P-Value | ||
|---|---|---|---|---|---|---|
|
| Statistical Features | Standard deviation | 28.36±2.03 | 25.52±0.61 | 25.94±0.84 | P = 0.048 |
| Skewness | 2.22±0.21 | 2.0±0.18 | 1.93±0.11 | P = 0.029 | ||
| Kurtosis | 8.02±1.19 | 6.42±0.82 | 6.28±0.5 | P = 0.007 | ||
| Fourier Power Spectrum | Angular Sum | 7840.45±606.53 | 6737.52±554.16 | 7468.83±901.72 | P = 0.049 | |
| Neighborhood Gray Tone Difference Matrix | Entropy | 42398.74±2479.9 | 37595.91±2148.07 | 36320.06±969.14 | P = 0.025 | |
| Laws Texture Energy Measures | LL | 111776.83±8124.23 | 100160.81±2589.38 | 101742.17±3658.35 | P = 0.045 | |
| Gray Level Difference Statistics | Variance | 810.13±119.39 | 653.6±30.78 | 675.45±44.24 | P = 0.011 | |