Literature DB >> 34954815

Applications of CRISPR/Cas gene-editing technology in yeast and fungi.

Binyou Liao1, Xi Chen1,2, Xuedong Zhou1,2, Yujie Zhou1,2, Yangyang Shi1,2, Xingchen Ye1, Min Liao1,2, Ziyi Zhou1,2, Lei Cheng3,4, Biao Ren5.   

Abstract

Genome editing technology has progressed rapidly in recent years. Although traditional gene-editing methods, including homologous recombination, zinc finger endonucleases, and transcription activator-like effector nucleases, have substantial implications for research in genetics and molecular biology, but they have remarkable limitations, including their low efficiency, high error rate, and complex design. A new gene-editing technology, the CRISPR/Cas system, was developed based on studies of archaeal and bacterial immune responses to viruses. Owing to its high target efficiency, simple primer design, and wide applications, the CRISPR/Cas system, whose developers were awarded the Nobel Prize in Chemistry in 2020, has become the dominant genomic editing technology in academia and the pharmaceutical industry. Here, we briefly introduce the CRISPR/Cas system and its main applications for genome engineering, metabolic engineering, and transcriptional regulation in yeast, filamentous fungi, and macrofungi. The polygene and polyploid editing, construction of yeast chromosomes, yeast library creation, regulation of metabolic pathways, and CRISPR activation/CRISPR interference systems are mainly summarized and discussed. The potential applications for the treatment of fungal infections and the further transformation and application of the CRISPR/Cas system in fungi are also proposed and discussed.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  CRISPR; Cas9; Fungi; Gene editing; Yeast

Mesh:

Year:  2021        PMID: 34954815     DOI: 10.1007/s00203-021-02723-7

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  107 in total

1.  Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision.

Authors:  Zehua Bao; Mohammad HamediRad; Pu Xue; Han Xiao; Ipek Tasan; Ran Chao; Jing Liang; Huimin Zhao
Journal:  Nat Biotechnol       Date:  2018-05-07       Impact factor: 54.908

Review 2.  Fungal secondary metabolites - strategies to activate silent gene clusters.

Authors:  Axel A Brakhage; Volker Schroeckh
Journal:  Fungal Genet Biol       Date:  2010-04-28       Impact factor: 3.495

Review 3.  (Post-)genomics approaches in fungal research.

Authors:  María Victoria Aguilar-Pontes; Ronald P de Vries; Miaomiao Zhou
Journal:  Brief Funct Genomics       Date:  2014-07-17       Impact factor: 4.241

Review 4.  Repair Pathway Choices and Consequences at the Double-Strand Break.

Authors:  Raphael Ceccaldi; Beatrice Rondinelli; Alan D D'Andrea
Journal:  Trends Cell Biol       Date:  2015-10-01       Impact factor: 20.808

Review 5.  Genome editing with CRISPR-Cas nucleases, base editors, transposases and prime editors.

Authors:  Andrew V Anzalone; Luke W Koblan; David R Liu
Journal:  Nat Biotechnol       Date:  2020-06-22       Impact factor: 54.908

6.  Generation of B cell-deficient pigs by highly efficient CRISPR/Cas9-mediated gene targeting.

Authors:  Fengjiao Chen; Ying Wang; Yilin Yuan; Wei Zhang; Zijian Ren; Yong Jin; Xiaorui Liu; Qiang Xiong; Qin Chen; Manling Zhang; Xiaokang Li; Lihua Zhao; Ze Li; Zhaoqiang Wu; Yanfei Zhang; Feifei Hu; Juan Huang; Rongfeng Li; Yifan Dai
Journal:  J Genet Genomics       Date:  2015-05-27       Impact factor: 4.275

7.  Homology-integrated CRISPR-Cas (HI-CRISPR) system for one-step multigene disruption in Saccharomyces cerevisiae.

Authors:  Zehua Bao; Han Xiao; Jing Liang; Lu Zhang; Xiong Xiong; Ning Sun; Tong Si; Huimin Zhao
Journal:  ACS Synth Biol       Date:  2014-09-19       Impact factor: 5.110

8.  Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast.

Authors:  Benjamin C Buchmuller; Konrad Herbst; Matthias Meurer; Daniel Kirrmaier; Ehud Sass; Emmanuel D Levy; Michael Knop
Journal:  Nat Commun       Date:  2019-07-04       Impact factor: 14.919

9.  Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease.

Authors:  Carolin Anders; Ole Niewoehner; Alessia Duerst; Martin Jinek
Journal:  Nature       Date:  2014-07-27       Impact factor: 49.962

Review 10.  Yeast genetic interaction screens in the age of CRISPR/Cas.

Authors:  Neil R Adames; Jenna E Gallegos; Jean Peccoud
Journal:  Curr Genet       Date:  2018-09-25       Impact factor: 3.886

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