Literature DB >> 34949654

The Application of Bayesian Methods in Cancer Prognosis and Prediction.

Jiadong Chu1, N A Sun1, Wei Hu1, Xuanli Chen1, Nengjun Yi2, Yueping Shen3.   

Abstract

With the development of high-throughput biological techniques, high-dimensional omics data have emerged. These molecular data provide a solid foundation for precision medicine and prognostic prediction of cancer. Bayesian methods contribute to constructing prognostic models with complex relationships in omics and improving performance by introducing different prior distribution, which is suitable for modelling the high-dimensional data involved. Using different omics, several Bayesian hierarchical approaches have been proposed for variable selection and model construction. In particular, the Bayesian methods of multi-omics integration have also been consistently proposed in recent years. Compared with single-omics, multi-omics integration modelling will contribute to improving predictive performance, gaining insights into the underlying mechanisms of tumour occurrence and development, and the discovery of more reliable biomarkers. In this work, we present a review of current proposed Bayesian approaches in prognostic prediction modelling in cancer.
Copyright © 2022, International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.

Entities:  

Keywords:  Bayesian; cancer; integrative; multi-omics; prognosis; review; single-omics; survival

Mesh:

Substances:

Year:  2022        PMID: 34949654      PMCID: PMC8717957          DOI: 10.21873/cgp.20298

Source DB:  PubMed          Journal:  Cancer Genomics Proteomics        ISSN: 1109-6535            Impact factor:   4.069


  52 in total

Review 1.  Gaussian processes for machine learning.

Authors:  Matthias Seeger
Journal:  Int J Neural Syst       Date:  2004-04       Impact factor: 5.866

2.  Hierarchical Bayesian formulations for selecting variables in regression models.

Authors:  Veronika Rockova; Emmanuel Lesaffre; Jolanda Luime; Bob Löwenberg
Journal:  Stat Med       Date:  2012-01-25       Impact factor: 2.373

3.  Bayesian ensemble methods for survival prediction in gene expression data.

Authors:  Vinicius Bonato; Veerabhadran Baladandayuthapani; Bradley M Broom; Erik P Sulman; Kenneth D Aldape; Kim-Anh Do
Journal:  Bioinformatics       Date:  2010-12-08       Impact factor: 6.937

4.  Joint Bayesian variable and graph selection for regression models with network-structured predictors.

Authors:  Christine B Peterson; Francesco C Stingo; Marina Vannucci
Journal:  Stat Med       Date:  2015-10-29       Impact factor: 2.373

5.  Large-scale benchmark study of survival prediction methods using multi-omics data.

Authors:  Moritz Herrmann; Philipp Probst; Roman Hornung; Vindi Jurinovic; Anne-Laure Boulesteix
Journal:  Brief Bioinform       Date:  2021-05-20       Impact factor: 11.622

6.  A Bayesian integrative approach for multi-platform genomic data: A kidney cancer case study.

Authors:  Thierry Chekouo; Francesco C Stingo; James D Doecke; Kim-Anh Do
Journal:  Biometrics       Date:  2016-09-26       Impact factor: 2.571

7.  Identification of early-stage lung adenocarcinoma prognostic signatures based on statistical modeling.

Authors:  Chunxiao Wu; Donglei Zhang
Journal:  Cancer Biomark       Date:  2017       Impact factor: 4.388

8.  Identification of Prognostic Genes and Pathways in Lung Adenocarcinoma Using a Bayesian Approach.

Authors:  Yu Jiang; Yuan Huang; Yinhao Du; Yinjun Zhao; Jie Ren; Shuangge Ma; Cen Wu
Journal:  Cancer Inform       Date:  2020-12-10

9.  Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data.

Authors:  Amalia Annest; Roger E Bumgarner; Adrian E Raftery; Ka Yee Yeung
Journal:  BMC Bioinformatics       Date:  2009-02-26       Impact factor: 3.169

10.  Increased Proportion of Variance Explained and Prediction Accuracy of Survival of Breast Cancer Patients with Use of Whole-Genome Multiomic Profiles.

Authors:  Ana I Vazquez; Yogasudha Veturi; Michael Behring; Sadeep Shrestha; Matias Kirst; Marcio F R Resende; Gustavo de Los Campos
Journal:  Genetics       Date:  2016-04-29       Impact factor: 4.562

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  2 in total

1.  Considerations of biomarker application for cancer continuum in the era of precision medicine.

Authors:  Rayjean J Hung; Elham Khodayari Moez; Shana J Kim; Sanjeev Budhathoki; Jennifer D Brooks
Journal:  Curr Epidemiol Rep       Date:  2022-07-09

Review 2.  From Omics to Multi-Omics Approaches for In-Depth Analysis of the Molecular Mechanisms of Prostate Cancer.

Authors:  Ekaterina Nevedomskaya; Bernard Haendler
Journal:  Int J Mol Sci       Date:  2022-06-03       Impact factor: 6.208

  2 in total

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