| Literature DB >> 34941053 |
Zhen Ren1,2, Hongmei Ding1,2, Zhenzhen Cai1,2, Yuan Mu1,2, Lin Wang1,2, Shiyang Pan1,2.
Abstract
ABSTRACT: This study is to develop and validate a preoperative prediction model for malignancy of solitary pulmonary nodules. Data from 409 patients who underwent solitary pulmonary nodule resection at the First Affiliated Hospital of Nanjing Medical University, China between June 2018 and December 2020 were retrospectively collected. Then, the patients were nonrandomly split into a training cohort and a validation cohort. Clinical features, imaging parameters and laboratory data were then collected. Logistic regression analysis was used to develop a prediction model to identify variables significantly associated with malignant pulmonary nodules (MPNs) that were then included in the nomogram. We evaluated the discrimination and calibration ability of the nomogram by concordance index and calibration plot, respectively. MPNs were confirmed in 215 (52.6%) patients by a pathological examination. Multivariate logistic regression analysis identified 6 risk factors independently associated with MPN: gender (female, odds ratio [OR] = 2.487; 95% confidence interval [CI]: 1.313-4.711; P = .005), location of nodule (upper lobe of lung, OR = 1.126; 95%CI: 1.054-1.204; P < .001), density of nodule (pure ground glass, OR = 4.899; 95%CI: 2.572-9.716; P < .001; part-solid nodules, OR = 6.096; 95%CI: 3.153-14.186; P < .001), nodule size (OR = 1.193; 95%CI: 1.107-1.290; P < .001), GAGE7 (OR = 1.954; 95%CI: 1.054-3.624; P = .033), and GBU4-5 (OR = 2.576; 95%CI: 1.380-4.806; P = .003). The concordance index was 0.86 (95%CI: 0.83-0.91) and 0.88 (95%CI: 0.84-0.94) in the training and validation cohorts, respectively. The calibration curves showed good agreement between the predicted risk by the nomogram and real outcomes. We have developed and validated a preoperative prediction model for MPNs. The model could aid physicians in clinical treatment decision making.Entities:
Mesh:
Year: 2021 PMID: 34941053 PMCID: PMC8701883 DOI: 10.1097/MD.0000000000028110
Source DB: PubMed Journal: Medicine (Baltimore) ISSN: 0025-7974 Impact factor: 1.817
Figure 1Flow chart of the study population. BPN = benign pulmonary nodule, MPN = malignant pulmonary nodule.
Comparison of participant characteristics in the training and validation cohorts.
| Characteristic | Training cohort (n = 309) | Validation cohort (n = 100) | |
| Median age (IQR), yr | 56 (48,63) | 55 (46,64) | .741 |
| Gender (%) | |||
| Male | 123 (39.8) | 42 (42.0) | .726 |
| Female | 186 (60.2) | 58 (58.0) | |
| Smoking history (%) | |||
| Yes | 54 (17.5) | 11 (11.0) | .156 |
| No | 255 (82.5) | 89 (89.0) | |
| Family history (%) | |||
| Yes | 12 (3.9) | 5 (5.0) | .575 |
| No | 297 (96.1) | 95 (95.0) | |
| P53, U/mL | 1.00 (0.30, 2.65) | 0.73 (0.20, 2.58) | .043 |
| PGP9.5, U/mL | 0.30 (0.00, 1.90) | 0.20 (0.00, 1.50) | .161 |
| SOX2, U/mL | 0.50 (0.10, 1.90) | 0.70 (0.10, 1.70) | .531 |
| GAGE7, U/mL | 0.80 (1.40, 2.80) | 0.60 (1.15, 2.98) | .209 |
| GBU4–5, U/mL | 1.90 (0.30, 15.75) | 2.20 (0.30,11.03) | .382 |
| MAGE, U/mL | 0.10 (0.00, 0.20) | 0.10 (0.00, 0.10) | .664 |
| CAGE, U/mL | 0.00 (0.00, 0.10) | 0.00 (0.00, 0.10) | .912 |
| TK1, pmol/L | 0.19 (0.07, 0.45) | 0.36 (0.06, 0.45) | .174 |
| CEA, ng/mL | 1.74 (1.05, 2.69) | 1.58 (1.00, 2.71) | .638 |
| CYFRA21-1, ng/mL | 1.81 (1.42, 2.39) | 1.83 (1.46, 2.49) | .519 |
| NSE, ng/mL | 16.17 (14.00, 19.34) | 15.78 (13.80, 18.64) | .373 |
| WBC, (109/L) | 5.54 (4.76, 6.67) | 5.42 (4.79, 6.71) | .818 |
| NLR | 1.68 (1.29, 2.16) | 1.75 (1.28, 2.19) | .887 |
| HB, g/L | 133 (125, 145) | 128 (121, 146) | .031 |
| PLT, 109/L | 201 (166, 235) | 210 (169, 237) | .204 |
| PDW, % | 13.60 (12.00, 16.31) | 11.05 (10.80, 11.90) | .039 |
| MPV, fL | 10.80 (10.00, 11.70) | 10.55 (10.13, 14.74) | .495 |
| DD, mg/L | 0.19 (0.13, 0.36) | 0.21 (0.13, 0.38) | .431 |
| Nodule size, mm | 12.70 (9.00, 18.00) | 13.05 (9.00, 18.53) | .095 |
| Location of nodule (%) | .635 | ||
| Upper | 162 (54.4) | 57 (57.0) | |
| middle | 23 (7.4) | 5 (5.0) | |
| Lower | 124 (40.2) | 38 (38.0) | |
| Nature of nodule (%) | .487 | ||
| Solid | 112 (36.2) | 34 (34.0) | |
| Pure ground glass | 104 (33.7) | 37 (37.0) | |
| Part-solid nodules | 93 (30.1) | 29 (29.0) | |
CEA = carcinoembryonic antigen, CYFRA21-1 = cytokeratin 19 fragment, DD = D-dimer, HB = hemoglobin, IQR = interquartile range, MPV = mean platelet volume, NLR = neutrophil–lymphocyte ratio, NSE = neuron-specific enolase, PDW = platelet distribution width, PLT = platelets, RDW = red blood cell distribution width, TK1 = thymidine kinase 1, WBC = white blood cells.
Univariate logistic regression analysis of preoperative data of patients with malignant pulmonary nodules in the training cohort.
| Variable | OR (95%CI) | |
| Gender, female vs male | 1.465 (0.915–2.344) | .039 |
| Smoking history, yes vs no | 1.482 (0.785–2.801) | .225 |
| Family history, yes vs no | 1.005 (0.947–1.086) | .892 |
| P53, U/mL | 1.047 (1.002–1.094) | .059 |
| PGP9.5, U/mL | 1.058 (0.941–1.190) | .343 |
| SOX2, U/mL | 1.055 (1.006–1.107) | .027 |
| GAGE7, U/mL | 1.070 (1.010–1.134) | .021 |
| GBU4–5, U/mL | 1.107 (1.050–1.167) | <.001 |
| MAGE, U/mL | 1.072 (0.964–1.193) | .200 |
| CAGE, U/mL | 1.001 (0.950–1.054) | .985 |
| TK1, pmol/L | 0.836 (0.670–1.044) | .115 |
| CEA, ng/mL | 1.054 (0.945–1.175) | .348 |
| CYFRA21-1, ng/mL | 1.063 (0.864–1.307) | .565 |
| NSE, ng/mL | 0.954 (0.912–0.997) | .037 |
| WBC, (109/L) | 0.816 (0.702–0.948) | .068 |
| NLR | 0.812 (0.645–1.021) | .074 |
| HB, g/L | 0.984 (0.969–1.000) | .052 |
| PLT, 109/L | 0.999 (0.995–1.003) | .469 |
| PDW, % | 1.004 (0.925–1.091) | .917 |
| MPV, fL | 1.062 (0.905–1.245) | .461 |
| DD, mg/L | 0.732 (0.484–1.108) | .140 |
| Nodule size, mm | 1.044 (1.013–1.075) | .005 |
| Location of nodule, upper vs middle and lower | 2.717 (1.355–3.476) | .001 |
| Nature of nodule | ||
| Pure ground glass vs solid | 7.037 (3.845–12.879) | <.001 |
| Part-solid nodules vs solid | 11.913 (5.957–23.822) | <.001 |
CEA = Carcinoembryonic antigen, CI = Confidence interval, CYFRA21-1 = Cytokeratin 19 fragment, DD = D-Dimer, HB = Hemoglobin, MPV = Mean platelet volume, NLR = neutrophil–lymphocyte ratio, NSE = Neuron-specific enolase, OR = Odds rat, PDW = platelet distribution width, PLT = Platelets, RDW = Red blood cell distribution width, TK1 = Thymidine kinase 1, WBC = White blood cells.
Multivariate logistic regression analysis of preoperative data of patients with malignant pulmonary nodules in the training cohort.
| Variable | β | OR (95%CI) | |
| Gender, female vs male | 0.911 | 2.487 (1.313–4.711) | .005 |
| GAGE7, U/mL | 0.670 | 1.954 (1.054–3.624) | .033 |
| GBU4–5, U/mL | 0.946 | 2.576 (1.380–4.806) | .003 |
| Nodule size, mm | 0.176 | 1.193 (1.107–1.290) | <.001 |
| Location of nodule, upper vs middle or lower | 0.119 | 1.126 (1.054–1.204) | <.001 |
| Nature of nodule | |||
| Pure ground glass vs solid | 1.501 | 4.899 (2.572–9.716) | <.001 |
| Part-solid vs solid | 1.682 | 6.096 (3.153–14.186) | <.001 |
CI = confidence interval, OR = odds ratio.
Figure 2Nomogram for predicting MPN preoperatively in patients with PN. When using the nomogram, find the position of each variable on the axis and the corresponding point vertically. Then, add the points of all variables, and determine the prediction probability of MPN on the bottom axis. MPN = malignant pulmonary nodule.
Figure 3Calibration curves of the clinical prediction model. A: Calibration plot for predicting MPN in the training cohort; B: calibration plot for predicting MPN in the validation cohort. C-index = concordance index, MPN = malignant pulmonary nodule.
Accuracy of the nomogram in predicting the risk of malignant pulmonary nodules at the optimal threshold value.
| Value (95%CI) | ||
| Variable | Training cohort | Validation cohort |
| Sensitivity, % | 80.1 (75.9–87.2) | 74.0 (67.7–85.2) |
| Specificity, % | 75.8 (70.3–85.8) | 73.5 (69.6–84.4) |
| Positive predictive value, % | 77.4 (82.8–91.0) | 84.1 (84.2–98.0) |
| Negative predictive value, % | 72.2 (65.6–78.1) | 75.5 (64.8–83.7) |
| Positive likelihood ratio | 4.07 (2.80–5.90) | 4.60 (3.60–6.90) |
| Negative likelihood ratio | 0.29 (0.20–0.36) | 0.32 (0.23–0.40) |
| Concordance index | 0.86 (0.83, 0.91) | 0.88 (0.84–0.94) |
| Predicted probability∗ | 0.54 | 0.56 |
CI = confidence interval.
Predicted probability refers to the optimal cutoff value for malignant pulmonary nodules prediction based on the maximum Youden index.