Literature DB >> 34939082

A graphical representation of glycan heterogeneity.

Xuyao Zeng1, Milos V Novotny1, David E Clemmer1, Jonathan C Trinidad1.   

Abstract

A substantial shortcoming of large-scale datasets is often the inability to easily represent and visualize key features. This problem becomes acute when considering the increasing technical ability to profile large numbers of glycopeptides and glycans in recent studies. Here, we describe a simple, concise graphical representation intended to capture the microheterogeneity associated with glycan modification at specific sites. We illustrate this method by showing visual representations of the glycans and glycopeptides from a variety of species. The graphical representation presented allows one to easily discern the compositions of all glycans, similarities and differences of modifications found in different samples and, in the case of N-linked glycans, the initial steps in the biosynthetic pathway.
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Entities:  

Keywords:  N-glycosylation; glycomics; glycoproteomics; mass spectrometry; quantification

Mesh:

Substances:

Year:  2022        PMID: 34939082      PMCID: PMC8966470          DOI: 10.1093/glycob/cwab116

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  16 in total

1.  Symbol Nomenclature for Graphical Representations of Glycans.

Authors:  Ajit Varki; Richard D Cummings; Markus Aebi; Nicole H Packer; Peter H Seeberger; Jeffrey D Esko; Pamela Stanley; Gerald Hart; Alan Darvill; Taroh Kinoshita; James J Prestegard; Ronald L Schnaar; Hudson H Freeze; Jamey D Marth; Carolyn R Bertozzi; Marilynn E Etzler; Martin Frank; Johannes Fg Vliegenthart; Thomas Lütteke; Serge Perez; Evan Bolton; Pauline Rudd; James Paulson; Minoru Kanehisa; Philip Toukach; Kiyoko F Aoki-Kinoshita; Anne Dell; Hisashi Narimatsu; William York; Naoyuki Taniguchi; Stuart Kornfeld
Journal:  Glycobiology       Date:  2015-12       Impact factor: 4.313

2.  Proteomics. Tissue-based map of the human proteome.

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Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

Review 3.  Unmasking Fucosylation: from Cell Adhesion to Immune System Regulation and Diseases.

Authors:  Jun Li; Hui-Chen Hsu; John D Mountz; John G Allen
Journal:  Cell Chem Biol       Date:  2018-03-08       Impact factor: 8.116

4.  The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach.

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Journal:  Glycobiology       Date:  2005-04-20       Impact factor: 4.313

5.  N-Glycan Profile of Cerebrospinal Fluids from Alzheimer's Disease Patients Using Liquid Chromatography with Mass Spectrometry.

Authors:  Byeong Gwan Cho; Lucas Veillon; Yehia Mechref
Journal:  J Proteome Res       Date:  2019-09-16       Impact factor: 4.466

6.  The N-glycome of the hemipteran pest insect Nilaparvata lugens reveals unexpected sex differences.

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7.  Influence of protein/glycan interaction on site-specific glycan heterogeneity.

Authors:  Marie-Estelle Losfeld; Ernesto Scibona; Chia-Wei Lin; Thomas K Villiger; Robert Gauss; Massimo Morbidelli; Markus Aebi
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8.  Toward Automated N-Glycopeptide Identification in Glycoproteomics.

Authors:  Ling Y Lee; Edward S X Moh; Benjamin L Parker; Marshall Bern; Nicolle H Packer; Morten Thaysen-Andersen
Journal:  J Proteome Res       Date:  2016-09-02       Impact factor: 4.466

9.  Effects of sialylated lactulose on the mouse intestinal microbiome using Illumina high-throughput sequencing.

Authors:  Mengdi Song; Jie Zeng; Tian Jia; Haiyan Gao; Ruiyao Zhang; Jikai Jiang; Guanglei Li; Tongchao Su
Journal:  Appl Microbiol Biotechnol       Date:  2019-10-29       Impact factor: 4.813

10.  pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification.

Authors:  Ming-Qi Liu; Wen-Feng Zeng; Pan Fang; Wei-Qian Cao; Chao Liu; Guo-Quan Yan; Yang Zhang; Chao Peng; Jian-Qiang Wu; Xiao-Jin Zhang; Hui-Jun Tu; Hao Chi; Rui-Xiang Sun; Yong Cao; Meng-Qiu Dong; Bi-Yun Jiang; Jiang-Ming Huang; Hua-Li Shen; Catherine C L Wong; Si-Min He; Peng-Yuan Yang
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

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  1 in total

1.  Synthesis of 2-Nitro-2,3-Unsaturated Glycosides by a Nanomagnetic Catalyst Fe3O4@C@Fe(III).

Authors:  Yu Yang; Nan Jiang; Yuling Mei; Zekun Ding; Jianbo Zhang
Journal:  Front Chem       Date:  2022-05-11       Impact factor: 5.545

  1 in total

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