Miguel Jorge1, Andrew W Milne1, Maria Cecilia Barrera1, José R B Gomes2. 1. Department of Chemical and Process Engineering, University of Strathclyde, 75 Montrose Street, Glasgow G1 1XJ, United Kingdom. 2. CICECO - Aveiro Institute of Materials, Department of Chemistry, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.
Abstract
In this paper, we present a new molecular model that can accurately predict thermodynamic liquid state and phase-change properties for organosilicon molecules including several functional groups (alkylsilane, alkoxysilane, siloxane, and silanol). These molecules are of great importance in geological processes, biological systems, and material science, yet no force field currently exists that is widely applicable to organosilicates. The model is parametrized according to the recent Polarization-Consistent Approach (PolCA), which allows for polarization effects to be incorporated into a nonpolarizable model through post facto correction terms and is therefore consistent with previous parametrizations of the PolCA force field. Alkyl groups are described by the United-Atom approach, bond and angle parameters were taken from previous literature studies, dihedral parameters were fitted to new quantum chemical energy profiles, point charges were calculated from quantum chemical optimizations in a continuum solvent, and Lennard-Jones dispersion/repulsion parameters were fitted to match the density and enthalpy of vaporization of a small number of selected compounds. Extensive validation efforts were carried out, after careful collection and curation of experimental data for organosilicates. Overall, the model performed quite well for the density, enthalpy of vaporization, dielectric constant, and self-diffusion coefficient, but it slightly overestimated the magnitude of self-solvation free energies. The modular and transferable nature of the PolCA force field allows for further extensions to other types of silicon-containing compounds.
In this paper, we present a new molecular model that can accurately predict thermodynamic liquid state and phase-change properties for organosilicon molecules including several functional groups (alkylsilane, alkoxysilane, siloxane, and silanol). These molecules are of great importance in geological processes, biological systems, and material science, yet no force field currently exists that is widely applicable to organosilicates. The model is parametrized according to the recent Polarization-Consistent Approach (PolCA), which allows for polarization effects to be incorporated into a nonpolarizable model through post facto correction terms and is therefore consistent with previous parametrizations of the PolCA force field. Alkyl groups are described by the United-Atom approach, bond and angle parameters were taken from previous literature studies, dihedral parameters were fitted to new quantum chemical energy profiles, point charges were calculated from quantum chemical optimizations in a continuum solvent, and Lennard-Jones dispersion/repulsion parameters were fitted to match the density and enthalpy of vaporization of a small number of selected compounds. Extensive validation efforts were carried out, after careful collection and curation of experimental data for organosilicates. Overall, the model performed quite well for the density, enthalpy of vaporization, dielectric constant, and self-diffusion coefficient, but it slightly overestimated the magnitude of self-solvation free energies. The modular and transferable nature of the PolCA force field allows for further extensions to other types of silicon-containing compounds.
Silicon
is the second most abundant element in the Earth’s
crust, behind oxygen, accounting for 28.8% by mass.[1] It is therefore no surprise that compounds involving silicon
play a major role in geological, biological, and industrial processes.
For example, silicon eroded from rocks and minerals is dissolved in
water under the form of orthosilicic acid, i.e., Si(OH)4, reaching concentrations of a few parts per million in oceans and
rivers. Some of that silicon is then harvested by organisms like diatoms
and sponges to yield intricately beautiful hierarchical structures
in a process called biosilicification.[2,3] Silicon is
also at the heart of the computer revolution, as the core material
in the manufacture of semiconductor chips.[4] Organosilicon molecules (e.g., dichlorodimethylsilane) are used
as precursors in the synthesis of silicone rubbers and polymers, including
the widely used polydimethylsiloxane.[5] As
a final example, of more direct relevance to our research, organosilicon
compounds like tetraethoxysilane are key precursor species in the
synthesis of porous materials like zeolites,[6,7] periodic
mesoporous silicas,[8,9] organosilicas,[10,11] and bioinspired silica.[3,12]Understanding,
controlling, and optimizing many of the above processes
and applications relies on obtaining molecular-level insight on how
silicon-containing molecules interact with each other and/or with
other compounds in a liquid or solution environment—for example,
biosilicification, porous silica synthesis, and silicone rubber polymerization
all take place in solution. Molecular modeling techniques are ideally
suited to shed light on such processes,[7,9,11,12] but they require accurate,
robust, and versatile classical interaction potential models (also
called force-fields). It is therefore somewhat surprising that, to
the best of our knowledge, no force-field that is generally applicable
to organosilicon compounds currently exists. There have been attempts
in the past to develop generally applicable models to describe silica-based
solids, e.g., to model adsorption in zeolites and other porous silica
materials[13−15] or to describe crystalline and amorphous silica surfaces.[16,17] However, it is not straightforward to assume that these models can
be directly transferred to silicon-containing molecules in the liquid
state, since both the intramolecular (e.g., conformational flexibility)
and intermolecular (e.g., polarization) environments will be quite
different from those in the solid state.The absence of a general
force-field does not preclude the existence
of molecular simulation studies focusing on individual molecules or
subsets of the large organosilicon “family”. In particular,
there have been several attempts to develop atomistic or united-atom
(UA) models of polydimethylsiloxane (PDMS) chains (see, e.g., refs (18 and 19) and references therein). Again,
however, it is not clear to which extent these models developed specifically
for polymers are directly transferable to smaller organosilicate molecules,
and only very few efforts in this direction have been reported. Striolo
and co-workers carried out simulations of polyhedral oligomeric silsesquioxanes
(e.g., octamer cages with alkyl substituents) dissolved in alkanes[20,21] or in PDMS[22] to characterize their structural
and dynamic properties. Their model was based on a combination of
the TraPPE force-field for alkanes[23] and
a previous model for PDMS,[18] which led
to a rather awkward combination of 12-6 and 9-6 functional forms for
the repulsion/dispersion interactions. Polyakov et al.[24] later tested the model of Striolo et al. in
simulations of tetraethylsilane and ditertbutylsilane, and found that
it yielded a density for the former molecule that was about 5% too
high and an enthalpy of vaporization that was about 15% too low. They
therefore refined the Lennard-Jones parameters of the Si sites to
obtain a more reasonable match with experimental data.Some
previous work has focused on modeling silicate or organosilicate
molecules that act as precursors in porous material synthesis. As
early as 2001, Pereira et al.[25] developed
a model for tetramethoxysilane (TMOS) and tetraethoxysilane (TEOS)
in the pure liquid state, by combining dispersion/repulsion parameters
from a zeolite model of Hill and Sauer[26] with empirically adjusted point charges. They obtained reasonable
agreement with experimental densities, but the enthalpy of vaporization
of both compounds was significantly overestimated, by about 18 kJ/mol.[25] Later, the same authors applied their model
to simulate precursor solutions in silica sol–gel synthesis,
which included orthosilicic acid monomers (i.e., Si(OH)4) and dimers (i.e., Si2O(OH)6), showing that
those species tended to aggregate in water/alcohol solutions.[27]Jorge and co-workers[28,29] later adapted the model
of Pereira et al.[25,27] to fit with more commonly used
functional forms (e.g., harmonic rather than quartic bond and angle
potentials; Lennard-Jones 12-6 instead of 9-6 function), and adjusted
the point charges to match quantum mechanical calculations on a wide
range of silica oligomers,[30] including
anionic species. The atomistic model for silicic acid and for higher
silica oligomers (both neutral and deprotonated) was combined with
a model for cationic ammonium surfactants to describe the initial
stages in the synthesis of mesoporous silica materials,[28,29] and with a model for amine surfactants to study the synthesis of
bioinspired silica.[31] The same group subsequently
extended their approach to model organosilicate precursors in the
synthesis of mesoporous organosilica materials.[32,33] The results from all these atomistic simulations formed the basis
for the development of a coarse-grained model of precursor solutions
in the synthesis of several classes of nanoporous silica materials.[9,11,12,34−36]Azenha and co-workers[37] used a similar
approach to Jorge et al.,[28,29] i.e., adapting and
extending the model of Pereira et al.[25,27] to be used
with more generally applicable functional forms, in this case the
OPLS-AA framework,[38] and applied their
model to describe the sol–gel synthesis of imprinted xerogels.
Their simulations included cyclic silicate trimers in the neutral
form, as well as an organosilicate derivative of the cyclic trimer.
As a validation test, they compared the density of two alkoxysilanes
(TMOS and (3-propylaminophenyl)-trimethoxysilane) against experimental
data, obtaining reasonable agreement (deviations of ∼7% and
∼2%, respectively). The same approach was later applied to
a more complex imprinting solution containing an imidazolium-based
organosilicate.[39]The studies described
above evidence the need for a widely applicable,
versatile, and robustly validated molecular model for organosilicon
compounds in the field of materials science, and this is the main
aim of the present paper. Because reliable experimental data for organosilicon
molecules is rather scarce, at least compared to more commonly studied
organic molecules, a significant effort of data collection, analysis,
and curation was undertaken, as described in detail in section . A further
motivation for this work is the realization that “standard”
nonpolarizable force-fields suffer from systematic shortcomings in
predictions of phase-change properties (e.g., enthalpy of vaporization,
solvation free energy) and electronic properties (e.g., dielectric
constant, dipole moment) due to the neglect of explicit polarization.[40−47] Inspired by theoretical developments in approximate treatments of
polarization effects, we have begun to parametrize a new class of
nonpolarizable models for liquids and solutions, which we call PolCA—standing
for Polarization-Consistent Approach.[48,49] The force-field
developed here for organosilicates is entirely consistent with the
new PolCA paradigm, and similarly to our recent work, it is based
on a United-Atom description of alkane groups.[23,50]Because parametrizing a force field for all possible organosilicate
molecules is a formidable task, in the present paper, which is meant
as the first step toward this ultimate goal, we focus on a subset
of this class of molecules. Namely, we limit ourselves to tetrahedrally
substituted organosilicates with alkyl (≡Si–CH), alkoxy (≡Si–O–CH), and/or silanol
(≡Si–OH) substituent groups. This excludes several molecules
of practical relevance, such as silane (SiH4), all molecules
with −SiH3, −SiH2, and −SiH
groups, molecules with aryl substituents, as well as chlorinated organosilanes.
Our choice is motivated by the key role played by alkylsilanes, alkoxysilanes,
and silanols in the sol–gel chemistry of silica,[51,52] as well as by parametrization convenience—i.e., maintaining
compatibility with the PolCA UA force field for alkanes[48] and alcohols[49] while
keeping the number of parameters that need to be determined down to
a manageable level. The paper is organized as follows. Section contains a brief description
of the methodology, starting with the collection and curation of experimental
data, followed by computational details, and ending with the force
field parametrization strategy. More comprehensive details of each
of these methodological aspects are presented in the Supporting Information. In section , we compare the results obtained with the
new PolCA force field for organosilicates against experimental data
for each class of compounds considered. We finish the paper with conclusions
and recommendations for future work.
Methodology
Experimental Data
A key requirement
for the adequate parametrization and validation of a molecular model
is the availability of accurate experimental data for a wide variety
of physical properties and chemical compounds. While such data for
organic compounds is widely available and easy to find, the same is
not true for organosilicates. Therefore, a significant effort was
devoted to the collection, analysis, and curation of experimental
data for organosilicates. In line with the PolCA approach, we used
the bulk density (ρ) and the enthalpy of vaporization (ΔHVap) of selected liquids to fit the required
parameters for each class of compounds, as described in detail in section . The models
were then validated by predicting the density and enthalpy of vaporization
of other compounds not used in the parametrization step, as well as
the dielectric constant (ε) and the self-solvation free energy
(ΔGSolv), when available. The self-diffusion
coefficient (D) of tetramethylsilane was also used
for validation, but no diffusion data for other relevant compounds
was found in the literature. Apart from the dielectric constant, other
electronic properties were needed to estimate the polarization corrections,
as described in section . This requires each molecule’s gas-phase dipole moment
(μ), polarizability (α), static dielectric constant, and
refractive index (nD).The full
details regarding the collection and analysis of experimental data
are provided in section S1 of the Supporting
Information. This section also presents a full list of chemical compounds
considered in this work, including their full name, chemical formula,
and abbreviated nomenclature. Here, we describe only the most important
points. Data was collected from several property compilation databases,
including those of Yaws,[53,54] Bažant et al.,[55] Rochow,[56] Eaborn,[57] Voronkov et al.,[58] Chickos and Acree,[59] Stull,[60] Maryott and Smith,[61] as well as the National Institute of Standards and Technology webbook.[62] However, whenever possible, the original source
of the data was sought and reanalyzed if necessary. Therefore, data
was also collected from a number of publications focusing on individual
molecules or small “families” of organosilicates.[24,63−92] When multiple data points for each property/compound pair were available,
an average and standard deviation were calculated. In those cases,
the uncertainty is reported as twice the standard error of the mean
(i.e., with error bars corresponding to ∼95% confidence interval).
For several property/compound pairs, however, only one data point
could be found, in which case no uncertainty is reported.When
a given literature source reported data at a temperature other
than 298 K, it was corrected by data fitting or other approximate
schemes, as described in detail in section S1 of the Supporting Information. Hence, except where explicitly noted,
all the experimental data points considered in the model parametrization
and validation stages correspond to a temperature of 298 K. For the
density, this was the only necessary analysis step. In Figure , we show an example of this
analysis for the case of tetraethylsilane.
Figure 1
Linear fits to the data
for density of tetraethylsilane as a function
of temperature obtained from Yokoyama et al.[64] (blue), Bažant et al.[55] (green),
Sugden and Wilkins[68] (orange), and Whitmore
et al.[69] (gray). The linear fit equations
and correlation coefficients are show in the insets with the corresponding
color code. Notice that the last point at 323 K from Whitmore et al.
(open circle) was excluded from the fit because it falls outside the
observed trends.
Linear fits to the data
for density of tetraethylsilane as a function
of temperature obtained from Yokoyama et al.[64] (blue), Bažant et al.[55] (green),
Sugden and Wilkins[68] (orange), and Whitmore
et al.[69] (gray). The linear fit equations
and correlation coefficients are show in the insets with the corresponding
color code. Notice that the last point at 323 K from Whitmore et al.
(open circle) was excluded from the fit because it falls outside the
observed trends.As we can see, all the
data series are quite consistent with the
exception of the last point from Whitmore et al.,[69] which was therefore removed from the analysis. Each linear
fit equation was then used to estimate the density at 298 K for each
of the corresponding data sets. A correction factor was also derived
from the average of the slopes shown in Figure , allowing us to correct density values that
were reported at temperatures different from 298 K.[56,57] As shown in Table S2, these two corrected
values, the four values obtained from the linear fits in Figure , and three additional
data points reported at 298 K[24,53,67] are quite consistent with each other, yielding an average density
of 761.1 kg/m3 with a very small uncertainty of 0.4 kg/m3.Literature data for the enthalpy of vaporization of
organosilicon
compounds was most often estimated from measurements of the vapor
pressure over a range of temperatures, although some data (most notably
that of Voronkov et al.[58]) was obtained
from calorimetry measurements. Whenever raw data for the vapor pressure
was available, we carried out our own calculations following the procedure
described by Chickos and Acree.[59] Specifically,
the data were fitted to an equation of the formwith pressure (p) in mmHg
and temperature (T) in Kelvin. Once the data for
the vapor pressure was fitted to eq , ΔHVap was calculated
fromwhere R is the ideal
gas
constant. Whenever possible, a narrow range of temperatures centered
around 298 K was selected for the fitting procedure. This was not
always possible, however, in which cases the calculated enthalpy needed
to be corrected for the temperature difference. To achieve this, we
implemented a step-by-step process that depended on the data availability
for each particular compound, as described in detail in section S1.2 of the Supporting Information. An
example is shown in Figure for tetramethylsilane. Data for the vapor pressure as a function
of temperature obtained from Aston et al.[76] and Stull[60] are plotted together with
the corresponding linear fits. From the slopes of these fits, the
enthalpy of vaporization was calculated from eq . Note that, although in principle it would
have been possible to combine all the vapor pressure data sets together
and perform a single fit, we opted to treat each data set independently,
thus obtaining an estimate of experimental uncertainty directly from
values of the target property (i.e., the enthalpy of vaporization).
Figure 2
Logarithm
of the vapor pressure as a function of inverse temperature
for tetramethylsilane. The data were obtained from Stull[60] (blue) and Aston et al.[76] (orange). The equations and correlation coefficients for the corresponding
linear fits are shown as insets with the same color code.
Logarithm
of the vapor pressure as a function of inverse temperature
for tetramethylsilane. The data were obtained from Stull[60] (blue) and Aston et al.[76] (orange). The equations and correlation coefficients for the corresponding
linear fits are shown as insets with the same color code.Despite the fact that both vapor pressure data sets are consistent
with each other, they span different ranges of temperature. As such,
the average temperatures that correspond to each enthalpy value are
different (275.6 K for Stull and 281.3 K for Aston et al.). For this
particular molecule, the temperature correction factor was estimated
from the parameters of a temperature-dependent correlation reported
by Yaws,[54] which was shown to be consistent
with an estimate obtained from the heat capacity difference (see Supporting Information). The temperature-corrected
enthalpies derived from Figure are consistent with each other and with three additional
values reported at 298 K,[54,58,77] leading to an average of 25.2 ± 0.5 kJ/mol for ΔHVap.Self-solvation free energies (i.e.,
when the solute and solvent
are the same compound) were calculated from the experimental vapor
pressure at 298 K using eq :where ρ is the experimental density
in kg/m3, MW is the molecular
weight in g/mol, and pVapor is the vapor
pressure in bar. The vapor pressures for each compound of interest
were obtained from the coefficients of eq , when available, or otherwise from the boiling
point and the enthalpy of vaporization after integrating the Clausius–Clapeyron
equation between two points on the vapor/liquid equilibrium curve
(see Supporting Information section S1.3 for details). Finally, electronic properties were obtained directly
from literature sources without further analysis, except for the calculation
of averages and uncertainties when more than one value was available.
A complete set of experimental properties used in model development
and validation is provided in Table S70.
Computational Details
Molecular Dynamics
(MD) simulations were carried out with GROMACS version 5.1.2,[93,94] using the Verlet leapfrog algorithm[95] to integrate the equations of motion with a time step of 2 fs. Simulation
boxes were cubic with periodic boundary conditions in all directions
and a box length of ∼3.1 nm (average box lengths for each individual
molecule varied, but were always close to this value). Liquid phase
simulations were run in the NpT ensemble, using a
V-rescale thermostat[96] with a coupling
constant of 0.1 ps to keep the temperature constant at 298 K, and
a Parrinello–Rahman barostat[97] with
a coupling constant of 2 ps and a compressibility of 4.5 × 10–5 m3/bar to keep the pressure constant at
1 bar. The Lennard-Jones potential was cut off at 1.0 nm, with long-range
dispersion corrections added to both energy and pressure. Long-range
electrostatic interactions were accounted for by using the particle-mesh
Ewald method.[98] Constraints were applied
on all bonds using the LINCS algorithm.[99] Most liquid-phase MD simulations were run for a total of 10 ns for
the force field parametrization stage and 50 ns for the validation
stage, with the first 0.5 ns of each run being discarded for equilibration
purposes. The exceptions were molecules containing silanol groups,
which exhibited larger fluctuations in thermodynamic properties and
hence were run for twice as long (i.e., 20 ns for parametrization
and 100 ns for validation).The bulk liquid density was directly
calculated from the average volume of the simulation box using the
GROMACS analysis tool gmx energy. This tool was also
applied to calculate the average potential energy required to estimate
the enthalpy of vaporization, following eq :In this equation, ULiq is the potential energy per mole in the liquid phase, UGas is the potential energy per mole in the gas phase,
and EPol is a correction term to account
for the effects of polarization (see below for details). The angular
brackets denote ensemble averages. Gas-phase MD simulations to compute UGas made use of the same protocol as bulk liquid
simulations, except that no barostat was used (i.e., simulations were
run in the NVT ensemble), the simulation boxes contained
a single molecule, and no periodic boundary conditions or cutoff radius
were applied, hence replicating a vacuum environment.A unique
feature of the PolCA approach is to explicitly account
for the effects of polarization in the calculation of phase-change
properties (e.g., enthalpy of vaporization or solvation free energy)
and electronic properties (e.g., dielectric constant). For phase-change
properties, this takes the form of an additive energy term, EPol, given bywhere μGas is the dipole
moment of the molecule in the gas phase, μLiq is
the dipole moment of the molecule in the liquid phase, α is
the polarizability of the molecule, and ε∞ is the infinite-frequency dielectric constant of the liquid. The
first term on the right-hand side of eq is the positive distortion energy, which represents
the energetic cost of distorting the wave function of the molecule
when it is transferred from an unpolarized state in the gas to a polarized
state in the liquid. It is similar to the correction first applied
by Berendsen et al.[100] when developing
the widely used SPC/E model of water, except that in Berendsen’s
expression, the average dipole moment of the molecular model was used
as a proxy for μLiq. The second term on the right-hand
side is the negative electronic energy, describing the favorable interaction
between the polarized molecule and the electronic clouds of the surrounding
liquid molecules. This term accounts for the purely electronic effects
of polarization, which are not captured in classical nonpolarizable
force fields.[40,41] The expression for the electronic
energy term was first proposed by Leontyev and Stuchebrukhov[41] and is based on representing the surrounding
solvent by a uniform dielectric continuum characterized by the infinite-frequency
dielectric constant of the liquid, here described by the simple Onsager
model for a dipole in a spherical cavity.[101] Use of ε∞ in eq ensures that only the purely electronic polarization
response of the system is taken into account, since the nuclear response
is already described implicitly in the classical model parameters
(namely, the effective point charges of the molecule).[40] We note that eq is identical to the expression used in our previous
work,[49] except that it has the opposite
sign—i.e., the polarization corrections are defined here with
reference to a transfer from the gas to the liquid phase.To
apply eq , μGas and α were obtained directly from experimental data
sources (see Supporting Information section S1.4), while ε∞ was calculated as the square
of the experimental index of refraction of the liquid measured at
the sodium D-line frequency. Although μLiq has been
estimated for water from scattering experiments,[102] we are not aware of experimental values for any other liquids,
including organosilicates. It is also possible to calculate μLiq from quantum mechanical (QM) calculations that replicate
the liquid environment (e.g., ab initio molecular
dynamics or quantum mechanics/molecular mechanics methods). However,
such calculations are very computationally demanding and to our knowledge
have only been performed for simple molecules like water (see ref (103) and references therein)
and methanol (see, e.g., ref (104)). Therefore, and in line with our previous work,[49] we estimate μLiq from an analytical
expression derived by applying the Onsager dielectric continuum model
to the surrounding liquid:Equation makes use of the experimental dielectric
constant of the
liquid (ε) and was derived by treating the radius of the cavity
self-consistently so that it is eliminated from the final expression.[41] The reader is referred to previous publications
by our group and others for further details on the calculation and
interpretation of polarization energies.[40−42,49,103] The estimated liquid
dipole moments and polarization energies for the entire set of organosilicate
molecules considered here are reported in Table S69.The self-diffusion coefficient was calculated, by
applying the
Einstein equation, from the slope of the mean-square displacement
averaged over the entire MD trajectory, calculated using the gmx msd tool of GROMACS. It is well-known that the calculation
of D is sensitive to finite-size effects.[105] To account for these effects, we calculated D for three values of the simulation box length (L), plotted D as a function of 1/L, and extrapolated to infinite box size. The results of
this procedure for tetramethylsilane are shown in Figure S47. We note that these finite-size corrections were
only carried out for tetramethylsilane, since experimental values
of D were not available for any other organosilicate
molecule.The static dielectric constant of the liquid was calculated
from
MD simulations using the GROMACS tool gmx dipoles, which applies eq where kB is Boltzmann’s
constant, ε0 is the vacuum permittivity, V is the volume of the simulation box, and M is the dipole moment of the entire simulation box. The dielectric
constant is also affected by the neglect of explicit polarization
in fixed-charge force fields,[45−47] in the sense that eq makes use of the effective dipole
moment of the model instead of considering the dipole moment of the
real liquid and neglects the purely electronic response of the medium.
To mitigate those shortcomings, we apply a simple correction to the
dielectric constant obtained from the MD simulations (εSimul)It has been shown
that application of eq to the results obtained
from MD simulations using several nonpolarizable force fields can
eliminate systematic errors due to the neglect of explicit polarization
and yield predictions that are in good agreement with experimental
values for a wide variety of pure liquids[46] as well as mixtures.[47]Self-solvation
free energies were calculated using the Bennett
Acceptance Ratio (BAR) method,[106] with
details described in our previous publication.[49] In brief, we decoupled the Lennard-Jones (LJ) and electrostatic
free energy contributions separately, using 16 λ-states for
LJ (0, 0.05, 0.1, 0.15, 0.2, 0.25, 0.3, 0.35, 0.4, 0.45, 0.5, 0.6,
0.7, 0.8, 0.9, and 1) and 6 λ-states for electrostatics (0,
0.2, 0.4, 0.6, 0.8, and 1). The intermediate lambdas were chosen based
on a calculation of their relative entropy, which is an effective
measure of phase-space overlap between adjacent λ-states.[107] A soft-core function was used to avoid instabilities
close to the noninteracting state,[108] with
parameters sc-power = 1 and sc-sigma = 0.3. Sc-alpha was 0.5 for the
LJ term, while sc-alpha = 0 was used for the electrostatic component.
The MD simulation protocol was the same as for the calculation of
bulk liquid properties, except for the use of a leapfrog stochastic
dynamics integrator.[109] Convergence tests
were carried out as described in ref (49) to determine the optimal length of each simulation
run. For all molecules, each λ-state of the LJ component was
run for a total of 10 ns. However, the length of each λ-state
run for the electrostatic component varied for each class of molecules—it
was 5 ns for alkylsilanes, 10 ns for alkoxysilanes, and 20 ns for
silanols. Polarization corrections were applied to the solvation free
energies by adding EPol obtained from eq to the results of the
MD simulations. The uncertainty in all simulated properties was estimated
by block averaging and is reported as error bars representing approximately
a 95% confidence interval on the mean.Quantum Mechanical (QM)
calculations, necessary to obtain point
charges and to parametrize the torsional potential terms (see section for details),
were carried out with Gaussian 09,[110] using
the hybrid B3LYP exchange-correlation functional[111,112] and Dunning’s aug-cc-pVTZ basis set.[113] This protocol has been shown to yield accurate predictions
for electronic properties of molecules.[114,115] Calculations to derive point charges for organosilicate molecules
made use of the IEFPCM method,[116] which
was used to include implicitly the solvent effects under the self-consistent
reaction field (SCRF) formalism with the default parameters from Gaussian
09 except where noted.
PolCA Force Field
In line with our
previous work, the model for organosilicate compounds is based on
the United-Atom paradigm, which means that aliphatic hydrogens are
not described explicitly, but their effect is implicitly included
in the parametrization of the adjacent carbon atoms—in other
words, each CH group is considered as
a single interaction site. The force field is a sum of several energy
terms, namely, bond stretching, angle bending, dihedral torsion, 12-6
Lennard-Jones (representing dispersion and repulsion interactions)
and fixed point charges described by the Coulomb potential. The functional
forms for these interactions, described below, were chosen to maintain
compatibility with the PolCA force field for other molecules[48,49] as well as to ensure the model could be applied in most standard
molecular simulation software packages.Bond stretching terms
are normally applied to all atoms connected by one covalent bond and
are described by a simple harmonic function, given in eq :where kBond is
the bond force constant, r0 is the equilibrium
bond length, and r is the actual distance between
the two bonded atoms. Consistently with previous parametrizations
of the PolCA force field,[48,49] as well as with the
TraPPE force field[23] on which it is based,
all bonds were treated as rigid by enforcing constraints during the
MD simulations. This effectively means that the force constant in eq is taken as infinite,
and therefore only the bond length needs to be specified.Angle
bending terms were described by a harmonic function, given
in eq :where kAngle is
the angle force constant, θ0 is the equilibrium bond
angle, and θ is the actual angle between the three bonded atoms.Torsion energies were described by the Ryckaert-Bellemans function, eq , which is a sum of powers
of cosines of the dihedral angle (φ), and where C are the coefficients for each corresponding
cosine power term.In
several force fields, the dihedral energy
is supplemented by including, in total or in part, Lennard-Jones and
Coulomb interactions between atoms separated by three bonds—i.e.,
the so-called 1-4 interactions between atoms on the two extremes of
a dihedral angle. Although such interactions may be necessary in some
particular cases, e.g., to avoid excessive attraction or repulsion
caused by highly charged groups, our approach has been to eliminate
1-4 interactions from the force field as it improves transferability
and reduces the degree of coupling between different parameters of
the model.Nonbonded interactions are described by two potential
energy terms,
one to describe repulsion and dispersion, in the form of the ubiquitous
12-6 Lennard-Jones potential, eq , and another to describe permanent electrostatic interactions
between atoms with fixed point charges, eq . In those equations, r is the distance between any pair of interaction
sites, σ is the
LJ collision diameter, ε is the LJ potential energy well depth, q is the point charge on site i, and ε0 is the vacuum permittivity.The LJ parameters
for interactions between
different types of sites were calculated using the standard Lorentz–Berthelot
combining rules:
Parameterization Approach
Given the
relative scarcity of experimental data for organosilicate molecules
in the liquid phase, as discussed in section and associated Supporting Information, it was important to keep the number of fitting
parameters of the model to a minimum. It was also our priority to
maintain compatibility with the PolCA approach and its previous parametrization
efforts.[48,49] For these reasons, only data for the density
and the enthalpy of vaporization of selected compounds was used in
the parametrization stage, and a step-by-step process was implemented,
as described below. Furthermore, parameters for aliphatic hydrocarbons[48] and alkyl alcohols[49] were carried over from previous work—in practice, however,
only the alkane parameters were relevant for the molecules considered
here. Any relevant bonded parameters were also carried over from the
TraPPE force field, as done in previous PolCA parametrizations.[48,49] In the remainder of this paper, we have used the following nomenclature
for atom types. Si is a tetrahedrally substituted silicon atom; where
relevant, we use a superscript to denote the number of oxygenated
substituent groups (e.g., Si3 is a silicon atom with three
oxygenated substituents—i.e. silanol, alkoxy, or siloxane—and
one remaining alkyl substituent). OH is a silanol oxygen
atom (i.e., part of a Si–O–H group). OC is
an alkoxy oxygen atom (i.e., part of a Si–O–CH group). OB is a “bridging”
siloxane oxygen atom (i.e., part of a Si–O–Si group).
C is an alkyl or alkoxy carbon atom, while H represents any hydrogen
atom.In the PolCA model for alcohols,[49] point charges on each atom were optimized empirically by fitting
to experimental data. Here, instead, we opted to assign point charges
to specific atom types by carrying out QM calculations on solvated
molecules, and fit only the LJ parameters to experimental data. This
significantly simplifies the fitting procedure and prevents overfitting,
given the limited set of experimental properties available. As described
in section , QM
calculations were carried out for selected compounds solvated in a
dielectric continuum model. This approach yields point charges that
effectively take into account the electronic environment of the surrounding
liquid, and are hence well-suited for models that aim to predict liquid-phase
properties.[117] The molecules were selected
in order to span all the necessary environments (namely, alkylsilane,
alkoxysilane, and silanol), while ensuring a reasonable computational
expense. Due to the lack of organosilicate solvent parameters in the
IEFPCM implementation of Gaussian 09, alternative solvents were selected
among those available based on the similarity of the static dielectric
constant and/or molecular structure. Table S71 lists the solvents selected for each organosilicate solute, together
with their dielectric constants.After each molecule was optimized
in the corresponding solvent,
point charges were calculated using the Density Derived Electrostatic
and Chemical (DDEC) method,[118] and the
results are reported in Table . We also fitted charges using the CHelpG procedure,[119] but those led to several chemical inconsistencies,
mainly due to the presence of buried atoms (most prominently, all
the tetrahedrally substituted Si atoms). DDEC yielded more chemically
realistic charges and therefore was adopted as the method of choice.
We note also that, in line with the UA approach, we added together
all the hydrogen and carbon charges in each alkane CH group, so only the aggregate charge is reported
in Table .
Table 1
Point Charges on Each Atom Obtained
from DDEC Calculations on Organosilicate Molecules Optimized in an
IEFPCM Continuum Model with Solvents Listed in Table S71a
molecule
qSi
qCH3(Si)
qCH2(Si)
qCH3(CH2Si)
qO
qH
qCHx(O)
qCH3(CH2O)
Met4Si
0.960
–0.240
–
–
–
–
–
–
Eth4Si
0.975
–
–0.2875
0.0438
–
–
–
–
Met3SiOH
1.451
–0.329
–
–
–0.908
0.444
–
–
Eth3SiOH
1.237
–
–0.333
0.0605
–0.849
0.4295
–
–
Met6Si2O
1.458
–0.3335
–
–
–0.915
–
–
–
SiOMet4
1.852
–
–
–
–0.719
–
0.256
–
SiOEth4
1.878
–
–
–
–0.758
–
0.326
–0.0375
M3SiOE
1.390
–0.320
–
–
–0.678
–
0.294
–0.046
M2ESiOE
1.329
–0.319
–0.332
0.0583
–0.664
–
0.2915
–0.0448
ME2SiOE
1.258
–0.309
–0.3282
0.0519
–0.645
–
0.289
–0.0404
E3SiOE
1.194
–
–0.322
0.0554
–0.638
–
0.287
–0.0432
Note that charges on aliphatic
hydrogens have been added together with those of the adjacent carbon,
in line with the UA approach. Molecule abbreviations are described
in the Supporting Information.
Note that charges on aliphatic
hydrogens have been added together with those of the adjacent carbon,
in line with the UA approach. Molecule abbreviations are described
in the Supporting Information.From an analysis of the charge values
in Table , several
trends are apparent. First of all,
the variability of the charge on the silicon atom is significant,
depending strongly on the nature of the substituent groups. Charges
on the outward-facing substituent groups, in contrast, are much more
stable across different molecules. It is also clear that charges on
alkane groups that are connected to other alkane groups (e.g., terminal
CH3 groups in ethyl substituents—fifth and ninth
columns in Table )
are very small. This supports our approach of assigning a value of
zero to the charge of those groups, which essentially behave as neutral
UA sites in alkanes. In those cases, the net charge for the alkyl
chain is placed on the first CH group
(e.g., the group adjacent to the Si atom in alkylsilanes).Based
on these observations, and with the aim of keeping the model
as simple as possible (i.e., avoiding the proliferation of different
atom types), we arrived at the charge assignment shown in Table . The charges for
each substituent group were calculated by averaging charges in similar
functional groups from Table and then rounding to the second decimal point. For each molecule,
the silicon charge then needs to be calculated after assigning the
charges on all substituent atoms so as to ensure overall charge neutrality.
This approach satisfies our criteria for simplicity, while providing
a good approximation to the original DDEC point charges reported in Table . In fact, the RMSD
between the force field charges and the original DDEC charges is below
0.05, with the largest deviation of 0.15 being observed for the Si
atom of SiOEth4.
Table 2
Atom Types and Point Charge Assignments
for the PolCA Organosilicate Force Fielda
atom type
description
q
-CHx-Si-(CHx)3
Any alkyl
group connected to Si in an alkysilane molecule
–0.24
CH3-Si-O-
CH3 group connected to Si in a silanol, alkoxysilane,
or siloxane molecule
–0.32
-CH2-Si-O-
CH2 group connected to Si in a silanol, alkoxysilane,
or siloxane molecule
–0.27
-Si-OC-CHx-
Any
alkyl group connected to an alkoxysilane oxygen
+0.25
-Si-OC-CHx-
Alkoxysilane oxygen
–0.68
-Si-OH-H
Silanol oxygen
–0.88
-Si-OH-H
Silanol hydrogen
+0.44
-Si-OB-Si-
Siloxane “bridging” oxygen
–0.88
-Si-
Tetrahedrally substituted
silicon
bespoke
The atom type
in question is
shown in bold. The silicon charges for each molecule are calculated
after assigning all other charges by enforcing the charge neutrality
constraint.
The atom type
in question is
shown in bold. The silicon charges for each molecule are calculated
after assigning all other charges by enforcing the charge neutrality
constraint.With point charges
having been assigned, we are in a position to
address the bonded potential parameters. The bond lengths were extracted
from the literature, either from experimental determinations[120] or QM calculations,[121,122] as summarized in Table and discussed in detail in section S3.1 of the Supporting Information. Equilibrium angle values and force
constants were taken from the work of Grigoras and Lane[121] and are shown in Table . Although those authors used an anharmonic
angle bending potential, we confirmed that restricting this to the
harmonic component alone, i.e., eq , led to a good description of the region around the
energy minimum (see Figure S21). Furthermore,
we assumed that the force constant for the C–Si–OC angle, which was not given by Grigoras and Lane, was the
same as that for the C–Si–OH angle. All remaining
bond and angle parameters were taken from the TraPPE force field.[23,123,124]
Table 3
Bond Lengths
for the Organosilicate
Molecules Considered in This Work
bond
length (nm)
source
Si–C
0.1875
(120)
Si–OH
0.1653
(121)
Si–OC
0.1656
(121)
Si–OB
0.1640
(122)
C–C
0.154
(23)
C–OC
0.141
(123)
OH−H
0.945
(124)
Table 4
Angle Bending Parameters for the Organosilicate
Molecules Considered in This Work
angle
θ0 (deg)
kAngle (kJ mol–1 rad–2)
source
C–Si–C
112.0
656.2
(121)
Si–C–C
111.5
726.5
(121)
C–Si–OH
107.4
774.6
(121)
Si–OH–H
115.5
257.8
(121)
OH–Si–OH
104.4
872.6
(121)
Si–OB–Si
149.5
61.3
(121)
Si–OC–C
124.8
298.1
(121)
C–Si–OC
111.0
774.6
(121)
OC–Si–OC
105.7
795.0
(121)
C–C–C
114.0
519.7
(23)
OC–C–C
112.0
418.2
(123)
Regarding
the torsion terms, we have decided to parametrize these
from in-house QM calculations, the details of which are described
in section . Although
we were able to find parameters for some relevant dihedrals in the
literature, most of them include 1-4 interactions, which goes against
our parametrization approach. We therefore fitted the coefficients
of eq to DFT energy
scans for each dihedral angle. For each molecule, the atoms pertaining
to the dihedral of interest were rotated incrementally in steps of
30° over the entire 360° range, leading to a total of 12
DFT calculations per dihedral. In each calculation, all the heavy
atoms as well as the hydrogen atoms belonging to hydroxyl groups (which
are explicitly represented in our force field) were kept fixed, while
all the aliphatic hydrogen atom positions were optimized. This is
in keeping with the philosophy of a UA model, where the aliphatic
hydrogens are implicitly described through the parameter set for the
adjacent carbon atom. In each case, an effort was made to eliminate,
as far as possible, contributions from other types of interatomic
interactions. For example, the bond and angle terms were always kept
constant over each scan, and so could be disregarded from the calculation.
Furthermore, molecules were chosen to minimize the contribution of
LJ and Coulomb interactions between atoms separated by four or more
bonds. Whenever this was not possible, those contributions were calculated
according to the corresponding classical force field expressions (eqs and 13) and subtracted from the DFT energy profiles. Full details
of the dihedral fitting procedure, including raw data and fits for
each individual case, are presented in section S4 of the Supporting Information.As an example, we show
the DFT data and the fit to eq for the C–OC–Si–OC dihedral angle in Figure , where the inset shows the
dimethyldimethoxysilane molecule selected for the parametrization
of this dihedral. In this molecule, there are 1–5 interactions
between the terminal carbons in both methoxy groups. Since both of
these atoms are bonded to an oxygen atom, they are charged (see Table ), and therefore,
both LJ and Coulomb contributions were nonzero. The total DFT energy
scan also contains contributions from two C–Si–OC–C dihedrals, which were subtracted from the energy
profile, having been previously parametrized (see Supporting Information). As we can see from Figure , the classical torsion potential
shows a good fit to the DFT energy profile. The full set of dihedral
parameters used in this work are shown in Table .
Figure 3
Comparison between the normalized DFT energy
profile (black circles)
and the classical torsion potential (red line) for the C–OC–Si–OC dihedral. The black dashed
line is a guide to the eye. The inset shows a ball-and-stick representation
of the dimethyldimethoxysilane molecule used to parametrize this dihedral
angle. Carbon atoms are shown in brown, silicon in cream, oxygens
in red, and hydrogens in white.
Table 5
Final Set of Torsion Parameters (in
kJ/mol) for All Dihedrals Considered in This Work
dihedral
kT,0
kT,1
kT,2
kT,3
kT,4
kT,5
CCSiC
1.224
3.672
0.0
–4.895
0.0
0.0
CSiOCC
1.364
4.093
0.0
–5.457
0.0
0.0
CCSiOC
0.692
2.456
0.437
–3.416
0.0
0.0
CCOCSi
7.949
7.892
2.723
–18.563
0.0
0.0
COCSiOC
4.314
4.803
0.0
–0.489
0.0
0.0
CSiOHH
0.870
2.600
0.0
–3.470
0.0
0.0
CCSiOH
0.801
2.760
0.508
–3.615
0.0
0.0
OCSiOHH
10.189
2.939
0.0
6.918
0.0
0.0
COCSiOH
13.021
0.350
–39.801
–25.132
39.605
31.769
OHSiOHH
10.071
6.167
2.322
6.236
0.0
0.0
CCSiOB
0.692
2.456
0.437
–3.416
0.0
0.0
COCSiOB
4.314
4.803
0.0
–0.489
0.0
0.0
CSiOBSi
0.0503
0.151
0.0
–0.201
0.0
0.0
OCSiOBSi
10.607
0.420
0.0
10.187
0.0
0.0
OBSiOBSi
10.607
0.420
0.0
10.187
0.0
0.0
OHSiOBSi
14.871
8.170
0.0
6.700
0.0
0.0
Comparison between the normalized DFT energy
profile (black circles)
and the classical torsion potential (red line) for the C–OC–Si–OC dihedral. The black dashed
line is a guide to the eye. The inset shows a ball-and-stick representation
of the dimethyldimethoxysilane molecule used to parametrize this dihedral
angle. Carbon atoms are shown in brown, silicon in cream, oxygens
in red, and hydrogens in white.The final stage of
parametrization was to determine the optimal
Lennard-Jones parameters for each type of atom. As mentioned above,
alkane parameters were taken from the PolCA model,[48] so the atom types that had to be parametrized were as follows:
Si, OC, OH, and OB. We adopted a
step-by-step approach to determine these parameters, by fitting the
LJ parameters for each atom type in turn. In each case, the parameters
were designed to match the density and enthalpy of vaporization of
selected compounds, as described in detail below. To find the optimal
parameters for each atom type, we applied the same optimization algorithm
as in our previous work for alcohols.[49] In brief, a learning grid was created using simulations with varying
LJ parameters for the atom of interest, and then, meta-models were
generated by fitting each property’s learning set to a second-order
equation with cross-interaction termswhere x1 and x2 are coded
values of σ and ε, respectively.
These meta-models predict how the fitted properties change with the
input parameters and were used to define the objective functionwhere Nmol and Nprop are the number
of molecules and target
properties used in the optimization, respectively, f(x1, x2) is the value predicted by the meta-model,
and yexp is
the experimental value. This objective function was minimized using
a steepest descent algorithm with a variable step length and a maximum
number of iterations equal to 4000. The lowest value from these iterations
was used as the initial point for a second optimization which used
smaller step lengths and a maximum number of iterations equal to 100.We started by fitting the parameters for an Si atom with four alkyl
substituents. For that purpose, we chose to match the density and
enthalpy of vaporization of tetramethylsilane (Met4Si) and tetraethylsilane
(Eth4Si) and used properties of other alkylsilanes for validation
purposes. After preliminary tests with a broad range of values for
σ and ε, we carried out a full optimization with a grid
composed of the following parameter values: σ ∈ [0.5;0.525;0.55;0.575;0.6;0.625]
and ε ∈ [0.05;0.075;0.1;0.125;0.15;0.175]. This returned
values of σ = 0.58 nm and ε = 0.108 kJ/mol for the Si
atom in alkylsilanes.Once those parameters were determined,
we moved on to parametrize
the alkoxy oxygen atom, OC, by fitting to the density and
enthalpy of vaporization of tetramethoxysilane (SiOMet4) and tetraethoxysilane
(SiOEth4). Apart from computational convenience, those two molecules
were chosen for their great importance as precursors in the synthesis
of porous silica materials such as zeolites and periodic mesoporous
silica. As a first attempt, we transferred the parameters for the
Si atom directly from the previous optimization on alkylsilanes, described
above. However, we found that by using those parameters for silicon,
it was not possible to simultaneously fit the four target experimental
properties to within a reasonable tolerance (see open symbols in Figure ). We carried out
several tests by slightly perturbing some of the bonded potential
parameters (e.g., bond lengths, dihedral constants) and the point
charges (e.g., using CHelpG instead of DDEC charges),[117] but found that the behavior was the same—the
models still fell within the same region depicted by open symbols
in Figure .
Figure 4
Absolute deviations
between simulated and experimental properties
for each of the target alkoxysilane molecules (circles for tetramethoxysilane
and triangles for tetraethoxysilane), obtained with the same grid
of parameters for σO and εO. Black
open symbols are results obtained with the default σSi and εSi parameters obtained for alkylsilanes, while
red full symbols were obtained with σSi scaled down
by 20% (see text for details).
Absolute deviations
between simulated and experimental properties
for each of the target alkoxysilane molecules (circles for tetramethoxysilane
and triangles for tetraethoxysilane), obtained with the same grid
of parameters for σO and εO. Black
open symbols are results obtained with the default σSi and εSi parameters obtained for alkylsilanes, while
red full symbols were obtained with σSi scaled down
by 20% (see text for details).To solve this problem, we had to scale down the value of σ
for the Si atom in alkoxysilanes, relative to the original value in
alkylsilanes. A similar approach was used in the parametrization of
both TraPPE[123] and PolCA[49] force fields
for alcohols, where the value of σ for α-carbon atoms
in secondary and tertiary alcohols was lower than the corresponding
values in alkanes. It is justified physically by the stronger electron-withdrawing
character of an oxygen atom when compared with a carbon atom. To account
for this effect in a physically reasonable and systematic way, we
reduced the value of σ for silicon by 5% for each oxygen-containing
substituent group—e.g., the value of σ was scaled by
20% for tetramethoxysilane, which has 4 alkoxy groups, but only by
5% for methoxytrimethylsilane, which has a single alkoxy substituent.
Using this scaling rule, our parametrization grid (σ ∈
[0.23;0.24;0.25;0.26;0.27;0.28] and ε ∈ [0.7;0.8;0.9;1.0;1.1;1.3;1.5])
yielded values for the target properties that passed close to the
origin in Figure ,
indicating the possibility of obtaining a good set of parameters for
the alkoxy oxygen. The values found after optimization were σ
= 0.235 nm and ε = 1.344 kJ/mol.For siloxane oxygen atoms,
OB, we opted to directly
transfer the parameters obtained for alkoxysilane oxygens, OC. This was because preliminary tests on hexamethyldisiloxane showed
good performance with this set of parameters (see section ). Finally, we carried out
a parametrization of the LJ parameters of silanol oxygens by matching
the density and enthalpy of vaporization of trimethylsilanol and triethylsilanol—two
of the few silanols that are liquid at room temperature and for which
experimental data was available. The value of σ for the Si atom
was scaled using the same rule determined above for alkoxysilanes.
A grid composed of σ ∈ [0.29;0.30;0.305;0.31;0.32;0.33]
and ε ∈ [0.7;0.8;0.9;1.0;1.1;1.3;1.5;1.7] was used. The
final set of LJ parameters for the organosilicate molecules considered
in this paper is provided in Table .
Table 6
Final Lennard-Jones Parameters for
the Organosilicate Molecules Considered in This Worka
atom
σ (nm)
ε (kJ/mol)
Si0
0.580
0.108
Si1
0.551
0.108
Si2
0.522
0.108
Si3
0.493
0.108
Si4
0.464
0.108
OC
0.235
1.344
OB
0.235
1.344
OH
0.304
1.750
The superscript
in the Si atom
denotes the number of oxygen-containing substituent groups.
The superscript
in the Si atom
denotes the number of oxygen-containing substituent groups.
Results
and Discussion
Alkylsilanes
As
described in section , the LJ parameters
for the silicon atom in tetrahedrally substituted alkylsilanes were
optimized to match the density and enthalpy of vaporization of tetramethylsilane
and tetraethylsilane. In Figure , we compare the model predictions against experimental
data for those two properties, as well as for the self-solvation free
energy (calculated from the experimental vapor pressure, as described
in section ) for
all alkylsilanes containing methyl or ethyl substituent groups. The
data is plotted as a function of the number of ethyl substituents
for ease of visualization, hence in the order: tetramethylsilane,
ethyltrimethylsilane, diethyldimethylsilane, triethylmethylsilane,
and tetraethylsilane. As we can see from Figure a, the density of all compounds is predicted
quite accurately. The simulated enthalpy of vaporization of most compounds
is within experimental uncertainty, although there seems to be a tendency
to slightly underestimate the enthalpy for methyl-rich compounds.
In contrast, the self-solvation free energies show a slight underestimation—i.e.,
the simulations predict more favorable solvation for all compounds.
However, with the exception of tetraethylsilane, the deviation is
always below 1 kJ/mol, which is quite reasonable considering the simplifications
of the model and the limited amount of experimental data. Furthermore,
the model is able to capture the correct trends of increasing density,
increasing enthalpy and decreasing solvation free energy with increasing
number of ethyl groups.
Figure 5
Comparison between model predictions (open triangles
and lines)
and experimental data (full circles) for (a) density, (b) enthalpy
of vaporization, and (c) self-solvation free energy. The data is for
alkylsilanes with only methyl or ethyl substituents, plotted as a
function of the number of ethyl substituents.
Comparison between model predictions (open triangles
and lines)
and experimental data (full circles) for (a) density, (b) enthalpy
of vaporization, and (c) self-solvation free energy. The data is for
alkylsilanes with only methyl or ethyl substituents, plotted as a
function of the number of ethyl substituents.It is useful to compare the predictions of our PolCA model to those
of previous parametrization attempts. As discussed in the Introduction, very few models have been tested for
liquid phase properties of alkylsilanes. A notable exception is the
work of Polyakov et al.,[24] who report values
for the density and enthalpy of vaporization of tetraethylsilane using
the model of Striolo et al.[20−22] as well as their own reparametrized
model. Their results are compared to the PolCA predictions and to
experimental data in Table . It is clear from this table that PolCA performs even better
than the model of Polyakov et al., even though the latter was specifically
designed for the tetraethylsilane molecule.
Table 7
Density
and Enthalpy of Vaporization
of Tetraethylsilane Predicted by Several Models and Obtained from
Experimental Measurements
model
source
ρ (kg/m3)
ΔHVap (kJ/mol)
Striolo et al.
ref (24)
795
33.2
Polyakov et al.
ref (24)
773
37.9
PolCA
This work
767.2
42.6
Experimental
severala
762.1
41.8
See Supporting Information for details.
See Supporting Information for details.We also compared our model predictions against available experimental
data for the self-diffusion coefficient and dielectric constant of
alkylsilanes. For the diffusion coefficient, only data for tetramethylsilane
was available. The values range between 3.6 × 10–9 and 4.4 × 10–9 m2/s, with an average
value of 4.0 × 10–9 m2/s.[63,65,125−129] After correcting for finite-size effects (see Figure S47), our predicted result of 3.8 × 10–9 m2/s compares quite well with the experimental measurements.
As for the dielectric constant, experimental values for tetramethysilane
(1.921) and tetraethylsilane (2.09) are available.[84] The model predictions, after applying polarization corrections
using eq , are 1.88
and 2.06, respectively, which are very close to the experimental values.
It should be noted that before applying eq , the dielectric constants predicted by the
simulations were all very close to 1 as a consequence of the nonpolar
nature of alkylsilanes. As demonstrated previously for other classes
of compounds,[46,47,49] applying polarization corrections to the dielectric constant is
essential to obtain predictions in line with experimental data.
Alkoxylsilanes
LJ parameters for
the oxygen atom in alkoxysilanes were optimized to match the target
properties of tetramethoxysilane and tetraethoxysilane. To validate
the model, we attempted to predict the density, enthalpy of vaporization,
and self-solvation free energy of a wide range of compounds based
on different combinations of methyl, ethyl, methoxy, and ethoxy substituents.
For ease of visualization, we grouped these compounds into homologous
series, as shown in Figure . Here, data for all molecules containing methoxy substituents
is plotted (an equivalent plot for molecules with ethoxy substituents
is shown in Figure S49). Two series are
shown, one for methyl- and another for ethyl-containing molecules.
Hence, the black circles (experimental) and red triangles (simulations)
go from tetramethylsilane to tetramethoxysilane by progressively replacing
methyl with methoxy groups, while the blue circles and green triangles
show a similar progression but starting from tetraethylsilane and
replacing ethyl groups with methoxy groups.
Figure 6
Comparison between model
predictions (open triangles and lines)
and experimental data (full circles) for (a) density, (b) enthalpy
of vaporization, and (c) self-solvation free energy. The data is for
alkylmethoxysilanes with either methyl (black/red) or ethyl (blue/green)
substituents, plotted as a function of the number of methoxy groups
present in the molecule.
Comparison between model
predictions (open triangles and lines)
and experimental data (full circles) for (a) density, (b) enthalpy
of vaporization, and (c) self-solvation free energy. The data is for
alkylmethoxysilanes with either methyl (black/red) or ethyl (blue/green)
substituents, plotted as a function of the number of methoxy groups
present in the molecule.It can be seen that replacing
either methyl or ethyl groups with
methoxy groups causes a gradual increase in the bulk liquid density
(Figure a). The model
captures this trend quite well and predicts the density of all compounds
quite accurately. The enthalpy of vaporization (Figure b), on the other hand, shows a different
trend depending on the type of alkyl substituent—replacing
methyl groups with methoxy groups causes a pronounced increase in
the enthalpy, while replacing ethyl with methoxy groups practically
causes no change. A similar tendency is observed for alkylethoxysilanes
(Figure S49), although not as pronounced.
The model is able to capture the trends quite reliably and predicts
enthalpies that are in very good agreement with experimental data.
In this regard, it is important to notice that a few experimental
points have very large error bars, originating from discrepancies
in different enthalpy measurements. In those cases, it would be useful
to carry out additional measurements to resolve such discrepancies.
Finally, Figure c
shows that the self-solvation free energy is once again systematically
underestimated by the model (i.e., simulations predict more favorable
solvation), albeit by relatively small amounts.As mentioned
above, no data for the self-diffusion coefficient
of alkoxysilanes was found. Dielectric constant data was only available
for molecules with methyl substituents, and these are shown in Figure together with the
model predictions. The dielectric constant is generally higher for
molecules with methoxy groups than their ethoxy counterparts and increases
with the number of alkoxy substituents. This is to be expected, since
the presence of alkoxy substituents increases the polarity of the
molecule and hence its dielectric response. The model is able to capture
all these trends correctly and yield quite good quantitative predictions
across the whole family of compounds, although it does seem to slightly
overestimate the magnitude of ε. As observed above for alkylsilanes,
application of eq is
essential to obtain predictions in reasonable agreement with experiments.
Figure 7
Comparison
between model predictions (open triangles and lines)
and experimental data (full circles) for the dielectric constant of
methylalkoxysilanes with either methoxy (black/red) or ethoxy (blue/green)
substituents, plotted as a function of the number of alkoxy groups
present in the molecule.
Comparison
between model predictions (open triangles and lines)
and experimental data (full circles) for the dielectric constant of
methylalkoxysilanes with either methoxy (black/red) or ethoxy (blue/green)
substituents, plotted as a function of the number of alkoxy groups
present in the molecule.Finally, in Table we compare predictions
from our model with those reported by Pereira
et al. using their bespoke force field for alkoxysilanes as well as
with experimental values. The new PolCA model yields much more accurate
predictions of both properties for both compounds. Unfortunately,
we are not aware of any additional simulation data for liquid alkoxysilanes
that can be compared to our predictions.
Table 8
Density
and Enthalpy of Vaporization
of Tetramethoxysilane and Tetraethoxylsilane Predicted by Different
Models and Obtained from Experimental Measurements
SiOMet4
SiOEth4
model
source
ρ (kg/m3)
ΔHVap (kJ/mol)
ρ (kg/m3)
ΔHVap (kJ/mol)
Pereira et al.
ref (25)
1040
66.2
941
64.3
PolCA
This work
1019.9
43.0
925.7
54.3
Experimental
severala
1024.2
42.3
926.6
52.5
See Supporting Information for details.
See Supporting Information for details.
Silanols
In Figure , we show predictions for bulk liquid properties
of silanol molecules. Unfortunately, molecules with more than one
silanol group per Si atom are solid at room temperature, and therefore
no experimental liquid phase properties were found. Therefore, we
restrict our analysis here to monosilanol compounds with a range of
alkyl substituents. Nevertheless, it is important to note that our
model is, in principle, fully transferrable to molecules containing
any number of Si–OH groups, including monosilicic acid, which
plays a crucial role in the synthesis of silica-based materials. We
intend to report simulations of such systems in future work.
Figure 8
Comparison
between model predictions (open triangles and lines)
and experimental data (full circles) for (a) density, (b) enthalpy
of vaporization, and (c) self-solvation free energy. The data is for
alkylsilanols with only methyl or ethyl substituents, plotted as a
function of the number of ethyl substituents.
Comparison
between model predictions (open triangles and lines)
and experimental data (full circles) for (a) density, (b) enthalpy
of vaporization, and (c) self-solvation free energy. The data is for
alkylsilanols with only methyl or ethyl substituents, plotted as a
function of the number of ethyl substituents.Figure a shows
that the model can match the experimental density values quite closely,
replicating the trend of increasing density with number of ethyl substituents
(replacing methyl groups). For the self-solvation free energy (Figure c), we observe again
a systematic underestimation by the model, which is somewhat more
pronounced than for alkoxysilanes. Nevertheless, the decreasing trend
is reproduced quite faithfully. The situation with the enthalpy of
vaporization, however, is less clear, primarily due to the small amount
of data and the extremely high uncertainty associated with some points.
In particular, for dimethylethylsilanol, only one measurement was
available; hence, no uncertainty could be estimated. However, this
value is unlikely to be very accurate, since an increase in the enthalpy
is expected upon replacing a methyl with an ethyl group (as observed
in Figures b and 6b for other classes of molecule). For triethylsilanol,
three values were found, but these are very inconsistent (see Table S37), leading to very large error bars.
Our simulation predictions are consistent with the value of 60.5 kJ/mol
obtained from vapor pressure reported by Bažant et al.,[55] but not with the two other experimental values.
Further experimental measurements are required to assess the validity
of our predictions.We were also able to find experimental data
for the dielectric
constant of two silanol molecules, trimethylsilanol and triethylsilanol.
Our model predicts the dielectric constant of the latter quite accurately
(2.44 compared to 2.66 in experiment) and only slightly underestimates
that of the former (5.84 compared to 7.17 in experiment). Once again,
polarization corrections are essential to achieve this level of agreement,
and this is particularly important for polar molecules—the
uncorrected values are 1.39 and 2.85 for triethylsilanol and trimethylsilanol,
respectively, which are far below the experimental values.
Overall Model Performance
In Figure , we show an overall
comparison between simulations and experiments for all compounds that
have available experimental data. This includes some compounds which
were not explicitly discussed in sections –3.3 because
they did not belong to homologous series. In particular, we include
hexamethyldisiloxane, which is the only compound that contains a bridging
siloxane oxygen atom. As mentioned in section , directly transferring the parameters
for the alkoxy oxygen to the siloxane oxygen led to results in very
good agreement with experimental data—ρ = 761.7 ±
0.3 kg/m3 compared to 758.4 ± 0.7 kg/m3; ΔHVap = 35.9 ± 0.1 kJ/mol
compared to 37.4 ± 1 kJ/mol; ΔGSolv = −22.5 ± 0.3 kJ/mol compared to −19.1 ±
0.2 kJ/mol; ε = 2.07 compared to 2.17. Full tables containing
all the simulated data, as well as experimental data, when available
for each property, are provided in Supporting Information (Tables S73–S77).
Figure 9
Overall comparison between
simulation and experimental data for
(a) density, (b) enthalpy of vaporization, (c) self-solvation free
energy, and (d) dielectric constant. Points with error bars are shown
for every compound for which experimental values are available. The
red line represents parity between simulation and experiment, while
the black dashed lines represent linear fits to the data with corresponding
intercepts (b), slopes (m), and
correlation coefficients (R) reported in the insets.
Overall comparison between
simulation and experimental data for
(a) density, (b) enthalpy of vaporization, (c) self-solvation free
energy, and (d) dielectric constant. Points with error bars are shown
for every compound for which experimental values are available. The
red line represents parity between simulation and experiment, while
the black dashed lines represent linear fits to the data with corresponding
intercepts (b), slopes (m), and
correlation coefficients (R) reported in the insets.We can see from Figure a that the density is very accurately predicted
for all relevant
compounds. Agreement for the enthalpy of vaporization is also quite
satisfactory (Figure b), particularly taking into account the very large uncertainty associated
with the experimental values for some organosilicate compounds. Additional
measurements of this property would be extremely useful to provide
more robust validation data. As for the self-solvation free energy
(Figure c), the simulations
predict systematically more favorable solvation than observed experimentally,
although the differences are seldom larger than 2–3 kJ/mol.
Given that the enthalpy of vaporization shows no such systematic deviation,
the observed trend in the free energies is likely to reflect an overestimation
of the entropy of solvation by the model, although a more detailed
analysis is needed to confirm this. Arguably, one could include solvation
free energies for a few compounds in the parametrization data set
to improve the model’s performance for predicting this property.
However, this would be quite computationally expensive, and the additional
effort was not deemed worthwhile. Finally, Figure d shows that, despite a fair amount of scatter,
the model does quite a reasonable job at predicting the dielectric
constant. It is important to note that this property was not considered
in the model parametrization, and therefore the results in Figure d constitute pure
predictions. The good agreement observed is further evidence that
polarization corrections are important in predicting the dielectric
constant, as shown for other families of liquids.[46,47]
Conclusions
In this paper, we reported
the parametrization of a new model for
organosilicate molecules in the liquid phase. The model is based on
the United-Atom approach and is an extension of the Polarization-Consistent
Approach that was previously developed for alkanes[48] and alkyl alcohols.[49] PolCA
represents a new paradigm in force field development, whereby polarization
effects are explicitly considered in the calculation of phase-change
and electronic properties through the application of post
facto corrections. To parametrize and validate the model,
we carried out a comprehensive data collection and analysis of experimental
properties of organosilicates, obtaining robust data with realistic
uncertainty estimates. This allowed us to fit the model parameters
in a step-by-step approach and carry out a thorough model validation.
The experimental database is itself an important outcome of the present
study, as it enables other researchers to carry out their own model
development and validation for this important class of molecules.The model was shown to accurately predict the density and enthalpy
of vaporization of several molecules, including alkylsilanes, alkoxysilanes,
siloxanes, and silanols, even those that were not used in its parametrization.
Furthermore, the model provided reasonable predictions of the self-solvation
free energy of organosilicates, despite a small systematic deviation.
Predictions of the dielectric constant were quite good, provided that
polarization effects were taken into account—if not, this property
was severely underestimated, as shown previously.[46,47] For the only molecule for which experimental self-diffusion data
was available, namely, tetramethylsilane, the agreement between simulation
and experiment was very good. This bodes well for the transferability
of the model to other organosilicates containing the same functional
groups. The next step in this parametrization will be to extend the
approach to include organosilicates with less than four substituent
groups (i.e., containing SiH groups),
as well as those with halogen substituents, which are widely used
in the synthesis of polymer materials. We hope to report on such developments
in forthcoming publications.
Authors: Daniel J Cole; Jonah Z Vilseck; Julian Tirado-Rives; Mike C Payne; William L Jorgensen Journal: J Chem Theory Comput Date: 2016-04-21 Impact factor: 6.006