Ning Jiang1,2, Hermann Voglmayr3, Chun-Gen Piao1, Yong Li1. 1. Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Institute of Forest Ecology, Environment and Nature Conservation, Chinese Academy of Forestry, Beijing 100091, China Environment and Nature Conservation, Chinese Academy of Forestry Beijing China. 2. The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, China University of Vienna Vienna Austria. 3. Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria Beijing Forestry University Beijing China.
Abstract
Diaporthe (Diaporthaceae, Diaporthales) is a common fungal genus inhabiting plant tissues as endophytes, pathogens and saprobes. Some species are reported from tree branches associated with canker diseases. In the present study, Diaporthe samples were collected from Alnusglutinosa, Fraxinusexcelsior and Quercusrobur in Utrecht, the Netherlands. They were identified to species based on a polyphasic approach including morphology, pure culture characters, and phylogenetic analyses of a combined matrix of partial ITS, cal, his3, tef1 and tub2 gene regions. As a result, four species (viz. Diaporthepseudoalnea sp. nov. from Alnusglutinosa, Diaporthesilvicola sp. nov. from Fraxinusexcelsior, D.foeniculacea and D.rudis from Quercusrobur) were revealed from tree branches in the Netherlands. Diaporthepseudoalnea differs from D.eres (syn. D.alnea) by its longer conidiophores. Diaporthesilvicola is distinguished from D.fraxinicola and D.fraxini-angustifoliae by larger alpha conidia. Ning Jiang, Hermann Voglmayr, Chun-Gen Piao, Yong Li.
Diaporthe (Diaporthaceae, Diaporthales) is a common fungal genus inhabiting plant tissues as endophytes, pathogens and saprobes. Some species are reported from tree branches associated with canker diseases. In the present study, Diaporthe samples were collected from Alnusglutinosa, Fraxinusexcelsior and Quercusrobur in Utrecht, the Netherlands. They were identified to species based on a polyphasic approach including morphology, pure culture characters, and phylogenetic analyses of a combined matrix of partial ITS, cal, his3, tef1 and tub2 gene regions. As a result, four species (viz. Diaporthepseudoalnea sp. nov. from Alnusglutinosa, Diaporthesilvicola sp. nov. from Fraxinusexcelsior, D.foeniculacea and D.rudis from Quercusrobur) were revealed from tree branches in the Netherlands. Diaporthepseudoalnea differs from D.eres (syn. D.alnea) by its longer conidiophores. Diaporthesilvicola is distinguished from D.fraxinicola and D.fraxini-angustifoliae by larger alpha conidia. Ning Jiang, Hermann Voglmayr, Chun-Gen Piao, Yong Li.
Entities:
Keywords:
Diaporthepseudoalnea; Diaporthesilvicola; Two new taxa; taxonomy; two new taxa
(syn. ) is the type genus of in , commonly occurring as plant endophytes, pathogens and saprobes (Udayanga et al. 2014, 2015; Guarnaccia et al. 2017, 2018a, 2018b; Tibpromma et al. 2018; Yang et al. 2020; Dissanayake et al. 2020; Jiang et al. 2021). The sexual morph is characterized by immersed perithecial ascomata and an erumpent pseudostroma with more or less elongated perithecial necks, unitunicate clavate to cylindrical asci, and fusoid, ellipsoid to cylindrical, hyaline uni- to bicellular ascospores (Udayanga et al. 2011; Senanayake et al. 2017). The asexual morph is characterized by ostiolate conidiomata, with cylindrical phialides producing up to three types of hyaline, aseptate conidia (Udayanga et al. 2011; Gomes et al. 2013; Yang et al. 2018), and was previously classified as . Following the “one fungus one name” nomenclature, Rossman et al. (2015) recommended to use based on priority, necessitating the transfer of numerous species to .Species of are known to cause plant diseases including dieback, canker, leaf spot, fruit rot, pod blights and seed decay. For example, , and caused melanose and stem end rot diseases of spp. (Udayanga et al. 2014), while caused leaf spot disease of in China (Jiang et al. 2021). Up to 19 species were confirmed to be associated with pear cankers in China (Guo et al. 2020), and eight species of were found to be the casual agents of Chinese grapevine dieback (Manawasinghe et al. 2019). Seven species were reported from blueberry twig blight and dieback diseases in Portugal (Hilário et al. 2020). and an additional six species were identified as endophytes from healthy tissues in China (Huang et al. 2015). and an additional 11 species were isolated as saprobes from dead wood in karst formations in China (Dissanayake et al. 2020).species were previously classified mainly based on host association and morphology (Rehner and Uecker 1994; Santos and Phillips 2009; Udayanga et al. 2011, 2014). However, several taxonomic studies of proved that phylogeny based on multiple genes is suitable to separate species (Voglmayr et al. 2012, 2017; Fan et al. 2018; Jiang et al. 2019, 2020; Jaklitsch and Voglmayr 2019, 2020). Species of are now characterised and circumscribed both by morphology and phylogeny of multi-locus DNA data, which revealed many cryptic species in recent years (Diogo et al. 2010; Lombard et al. 2014; Gao et al. 2016, 2017; Long et al. 2019; Yang et al. 2020, 2021; Zapata et al. 2020; Huang et al. 2021). To clarify the species boundaries of the complex, the Genealogical Phylogenetic Species Recognition principle (GCPSR) and the coalescent-based model Poisson Tree Processes (PTPs) were employed, which suggested that the species complex actually represents only a single species, (Hilário et al. 2021).In the present study, samples from cankered branches of several tree species were collected in the Netherlands, and identified based on modern taxonomic approaches. As a result, two new species and two known species were identified, and the new species are described and illustrated herein.
Materials and Methods
Collection, examination and isolation
The fresh specimens of cankered branches were sampled from , and in Utrecht, the Netherlands. Morphological characteristics of the conidiomata were determined under a Nikon AZ100 dissecting stereomicroscope. More than 20 conidiomata were sectioned, and 50 conidia were randomly selected for measurement using a Leica compound microscope (LM, DM 2500). Isolates were obtained by removing a mucoid conidial mass from conidiomata, spreading the suspension onto the surface of 1.8 % potato dextrose agar (PDA), and incubated at 25 °C for up to 24 h. Single germinating conidia were removed and plated onto fresh PDA plates. Cultural characteristics of isolates incubated on PDA in the dark at 25 °C were recorded, including the colony color and conidiomata structures. The cultures were deposited in the China Forestry Culture Collection Center (CFCC; http://www.cfcc-caf.org.cn/), and the specimens in the herbarium of the Chinese Academy of Forestry (CAF; http://museum.caf.ac.cn/).
DNA extraction, PCR amplification and phylogenetic analyses
Genomic DNA was extracted from colonies grown on cellophane-covered PDA using a cetyltrimethylammonium bromide (CTAB) method (Doyle and Doyle 1990). DNA was checked by electrophoresis in 1 % agarose gel, and the quality and quantity were measured using a NanoDrop 2000 (Thermo Scientific, Waltham, MA, USA). Five partial loci, including the 5.8S nuclear ribosomal DNA gene with the two flanking internally transcribed spacer (ITS) regions, the calmodulin (), the histone H3 (), the translation elongation factor 1-alpha () and the beta-tubulin () genes were amplified by the primer pairs and polymerase chain reaction (PCR) process listed in Table 1. The PCR products were assayed via electrophoresis in 2 % agarose gels. DNA sequencing was performed using an ABI PRISM 3730XL DNA Analyser with a BigDye Terminator Kit v.3.1 (Invitrogen, USA) at the Shanghai Invitrogen Biological Technology Company Limited (Beijing, China).
Table 1.
Genes used in this study with PCR primers and process.
Glass & Donaldson 1995;O’Donnell and Cigelnik 1997
Genes used in this study with PCR primers and process.The quality of the amplified nucleotide sequences was checked and the sequences assembled using SeqMan v.7.1.0. Reference sequences were retrieved from the National Center for Biotechnology Information (NCBI), based on recent publications on the genus (Dissanayake et al. 2021; Gao et al. 2021; Huang et al. 2021; Sun et al. 2021, Wang et al. 2021; Yang et al. 2021). Sequences were aligned using MAFFT v. 6 (Katoh and Toh 2010) and corrected manually using MEGA 7.0.21. The best-fit nucleotide substitution models for each gene were selected using jModelTest v. 2.1.7 (Darriba et al. 2012) under the Akaike Information Criterion.The phylogenetic analyses of the combined gene regions were performed using Maximum Likelihood (ML) and Bayesian Inference (BI) methods. ML was implemented on the CIPRES Science Gateway portal (https://www.phylo.org) using RAxML-HPC BlackBox 8.2.10 (Stamatakis 2014), employing a GTRGAMMA substitution model with 1000 bootstrap replicates. While BI was performed using a Markov Chain Monte Carlo (MCMC) algorithm in MrBayes v. 3.0 (Ronquist et al. 2003). Two MCMC chains, started from random trees for 1000000 generations and trees, were sampled every 100th generation, resulting in a total of 10000 trees. The first 25 % of trees were discarded as burn-in of each analysis. Branches with significant Bayesian Posterior Probabilities (BPP) were estimated in the remaining 7500 trees. Phylogenetic trees were viewed with FigTree v.1.3.1 and processed by Adobe Illustrator CS5. The nucleotide sequence data of the new taxa were deposited in GenBank and are listed in Table 2.
Table 2.
Isolates and GenBank accession numbers used in the phylogenetic analyses of .
Species
Strain
Host
Origin
GenBank accession numbers
ITS
cal
his3
tef1
tub2
Diaportheacaciigena
CBS 129521
Acaciaretinodes
Australia
KC343005
KC343247
KC343489
KC343731
KC343973
D.acericola
MFLUCC 17-0956
Acernegundo
Italy
KY964224
KY964137
NA
KY964180
KY964074
D.acerigena
CFCC 52554
Acertataricum
China
MH121489
MH121413
MH121449
MH121531
NA
D.acerigena
CFCC 52555
Acertataricum
China
MH121490
MH121414
MH121450
MH121532
NA
D.acuta
PSCG 047
Pyruspyrifolia
China
MK626957
MK691125
MK726161
MK654802
MK691225
D.acutispora
LC6161
Coffea
China
KX986764
KX999274
KX999235
KX999155
KX999195
D.alangii
CFCC 52556
Alangiumkurzii
China
MH121491
MH121415
MH121451
MH121533
MH121573
D.alangii
CFCC 52557
Alangiumkurzii
China
MH121492
MH121416
MH121452
MH121534
MH121574
D.albosinensis
CFCC 53066
Betulaalbosinensis
China
MK432659
MK442979
MK443004
MK578133
MK578059
D.albosinensis
CFCC 53067
Betulaalbosinensis
China
MK432660
MK442980
MK443005
MK578134
MK578060
D.alleghaniensis
CBS 495.72
Betulaalleghaniensis
Canada
MH121502
MH121426
MH121462
MH121544
MH121584
D.ambigua
CBS 114015
Pyruscommunis
South Africa
KC343010
KC343252
KC343494
KC343736
KC343978
D.ampelina
STE-U 2660
Vitisvinifera
France
NA
AY745026
NA
AY745056
NA
D.amygdali
CBS 126679
Prunusdulcis
Portugal
MH864208
KC343264
KC343506
KC343748
KC343990
D.anacardii
CBS 720.97
Anacardiumoccidentale
East Africa
KC343024
KC343266
KC343508
KC343750
KC343992
D.angelicae
CBS 111592
Heracleumsphondylium
Austria
KC343027
KC343269
KC343511
KC343753
KC343995
D.apiculatum
CFCC 53068
Rhuschinensis
China
MK432651
MK442973
MK442998
MK578127
MK578054
D.apiculatum
CFCC 53069
Rhuschinensis
China
MK432652
MK44297
MK442999
MK578128
MK578055
D.aquatica
IFRDCC 3051
Aquatic habitat
China
JQ797437
NA
NA
NA
NA
D.arctii
DP0482
Arctiumlappa
Austria
KJ590736
KJ612133
KJ659218
KJ590776
KJ610891
D.arecae
CBS 161.64
Arecacatechu
India
KC343032
KC343274
KC343516
KC343758
KC344000
D.arengae
CBS 114979
Arengaengleri
Hong Kong
MF773664
KC343276
KC343518
KC343760
KC344002
D.aseana
MFLUCC 12-0299a
Unknown
Thailand
KT459414
KT459464
NA
KT459448
KT459432
D.asheicola
CBS 136967
Vacciniumashei
Chile
KJ160562
KJ160542
NA
KJ160594
KJ160518
D.aspalathi
CBS 117169
Aspalathuslinearis
South Africa
KC343036
KC343278
KC343520
KC343762
KC344004
D.australafricana
CBS 111886
Vitisvinifera
Australia
KC343038
KC343280
KC343522
KC343764
KC344006
D.australiana
CBS 146457
Macadamia
Australia
MN708222
NA
NA
MN696522
MN696530
D.baccae
CBS 136972
Vacciniumcorymbosum
Italy
MK370623
MG281695
MF418264
KJ160597
MF418509
D.batatas
CBS 122.21
Ipomoeabatatas
USA
KC343040
KC343282
KC343524
KC343766
KC344008
D.bauhiniae
CFCC 53071
Bauhiniapurpurea
China
MK432648
MK442970
MK442995
MK578124
MK578051
D.bauhiniae
CFCC 53072
Bauhiniapurpurea
China
MK432649
MK442971
MK442996
MK578125
MK578052
D.bauhiniae
CFCC 53073
Bauhiniapurpurea
China
MK432650
MK442972
MK442997
MK578126
MK578053
D.beilharziae
BRIP 54792
Indigoferaaustralis
Australia
JX862529
NA
NA
JX862535
KF170921
D.benedicti
SBen914
Diaporthebenedicti
USA
KM669929
KM669862
NA
KM669785
NA
D.betulae
CFCC 50469
Betulaplatyphylla
China
KT732950
KT732997
KT732999
KT733016
KT733020
D.betulae
CFCC 50470
Betulaplatyphylla
China
KT732951
KT732998
KT733000
KT733017
KT733021
D.betulicola
CFCC 51128
Betulaalbo-sinensis
China
KX024653
KX024659
KX024661
KX024655
KX024657
D.betulicola
CFCC 51129
Betulaalbo-sinensis
China
KX0246554
KX024660
KX024662
KX0246556
KX024658
D.betulina
CFCC 52560
Betulaalbo-sinensis
China
MH121495
MH121419
MH121455
MH121537
MH121577
D.betulina
CFCC 52561
Betulaalbo-sinensis
China
MH121496
MH121420
MH121456
MH121538
MH121578
D.biconispora
ZJUD62
Citrusmaxima
China
KJ490597
NA
KJ490539
KJ490476
KJ490418
D.biguttulata
ZJUD47
Citruslimon
China
KJ490582
NA
KJ490524
KJ490461
KJ490403
D.bohemiae
CBS 143347
Vitisvinifera
Czech Republic
MK300012
MG281710
MG281361
MG281536
MG281188
D.brasiliensis
CBS 133183
Aspidospermatomentosum
Brazil
KC343042
KC343284
KC343526
KC343768
KC344010
D.caatingaensis
URM7485
Tacingainamoena
Brazil
KY085927
KY115598
NA
KY115604
KY115601
D.camelliae-sinensis
SAUCC194.92
Camelliasinensis
China
MT822620
MT855699
MT855588
MT855932
MT855817
D.canthii
CPC 19740
Canthiuminerme
South Africa
JX069864
NA
NA
NA
NA
D.caryae
CFCC 52563
Caryaillinoinensis
China
MH121498
MH121422
MH121458
MH121540
MH121580
D.caryae
CFCC 52564
Caryaillinoinensis
China
MH121499
MH121423
MH121459
MH121541
MH121581
D.cassines
CPC 21916
Cassineperagua
South Africa
KF777155
NA
NA
KF777244
NA
D.caulivora
CBS 127268
Glycinemax
Croatia
MH864501
KC343287
KC343529
KC343771
KC344013
D.cercidis
CFCC 52565
Cercischinensis
China
MH121500
MH121424
MH121460
NA
MH121582
D.cercidis
CFCC 52566
Cercischinensis
China
MH121501
MH121425
MH121461
NA
MH121583
D.chamaeropis
CBS 454.81
Chamaeropshumilis
Greece
KC343048
KC343290
KC343532
KC343774
KC344016
D.charlesworthii
BRIP 54884m
Rapistrumrugostrum
Australia
KJ197288
NA
NA
KJ197250
KJ197268
D.chensiensis
CFCC 52567
Abieschensiensis
China
MH121502
MH121426
MH121462
MH121544
MH121584
D.chensiensis
CFCC 52568
Abieschensiensis
China
MH121503
MH121427
MH121463
MH121545
MH121585
D.chongqingensis
PSCG 435
Pyruspyrifolia
China
MK626916
MK691209
MK726257
MK654866
MK691321
D.chrysalidocarpi
SAUCC194.35
Chrysalidocarpuslutescens
China
MT822563
MT855646
MT855532
MT855760
MT855876
D.cichorii
MFLUCC 17-1023
Cichoriumintybus
Italy
KY964220
KY964133
NA
KY964176
KY964104
D.cinnamomi
CFCC 52569
Cinnamomum
China
MH121504
NA
MH121464
MH121546
MH121586
D.cinnamomi
CFCC 52570
Cinnamomum
China
MH121505
NA
MH121465
MH121547
MH121587
D.cissampeli
CPC 27302
Cissampeloscapensis
South Africa
KX228273
NA
KX228366
NA
KX228384
D.citri
AR3405
Citrus
USA
KC843311
KC843157
KJ420881
KC843071
KC843187
D.citri
CFCC 53079
Citrussinensis
China
MK573940
MK574579
MK574595
MK574615
MK574635
D.citriasiana
CGMCC 3.15224
Citrusunshiu
China
JQ954645
KC357491
KC490515
JQ954663
KC357459
D.citrichinensis
CGMCC 3.15225
Citrus
China
JQ954648
KC357494
NA
JQ954666
NA
D.collariana
MFLU 17-2770
Magnoliachampaca
Thailand
MG806115
MG783042
NA
MG783040
MG783041
D.compactum
LC3083
Camelliasinensis
China
KP267854
NA
KP293508
KP267928
NA
D.conica
CFCC 52571
Alangiumchinense
China
MH121506
MH121428
MH121466
MH121548
MH121588
D.conica
CFCC 52572
Alangiumchinense
China
MH121507
MH121429
MH121467
MH121549
MH121589
D.constrictospora
CGMCC 3.20096
Unknown
China
MT385947
MT424718
MW022487
MT424682
MT424702
D.convolvuli
CBS 124654
Convolvulusarvensis
Turkey
KC343054
KC343296
KC343538
KC343780
KC344022
D.coryli
CFCC 53083
Corylusmandshurica
China
MK432661
MK442981
MK443006
MK578135
MK578061
D.coryli
CFCC 53084
Corylusmandshurica
China
MK432662
MK442982
MK443007
MK538176
MK578062
D.corylicola
CFCC 53986
Corylusheterophylla
China
MW839880
MW836684
MW836717
MW815894
MW883977
D.corylicola
CFCC 53987
Corylusheterophylla
China
MW839867
MW836685
MW836718
MW815895
MW883978
D.crotalariae
CBS 162.33
Crotalariaspectabilis
USA
MH855395
JX197439
KC343540
GQ250307
KC344024
D.crousii
CAA 823
Vacciniumcorymbosum
Portugal
MK792311
MK883835
MK871450
MK828081
MK837932
D.cucurbitae
DAOM 42078
Cucumis
Canada
KM453210
NA
KM453212
KM453211
KP118848
D.cuppatea
CBS 117499
Aspalathuslinearis
South Africa
MH863021
KC343299
KC343541
KC343783
KC344025
D.cynaroidis
CBS 122676
Proteacynaroides
South Africa
KC343058
KC343300
KC343542
KC343784
KC344026
D.cytosporella
FAU461
Citruslimon
Italy
KC843307
KC843141
NA
KC843116
KC843221
D.diospyricola
CPC 21169
Diospyroswhyteana
South Africa
KF777209
NA
NA
NA
NA
D.discoidispora
ZJUD89
Citrusunshiu
China
KJ490624
NA
KJ490566
KJ490503
KJ490445
D.dorycnii
MFLUCC 17-1015
Dorycniumhirsutum
Italy
KY964215
NA
NA
KY964171
KY964099
D.drenthii
CBS 146453
Macadamia
Australia
MN708229
NA
NA
MN696526
MN696537
D.elaeagni-glabrae
LC4802
Elaeagnusglabra
China
KX986779
KX999281
KX999251
KX999171
KX999212
D.ellipicola
CGMCC 3.17084
Lithocarpusglaber
China
KF576270
NA
NA
KF576245
KF576294
D.endophytica
CBS 133811
Schinusterebinthifolius
Brazil
KC343065
KC343307
KC343549
KC343791
KC344033
D.eres
CBS 146.46
Alnus
Netherlands
KC343008
KC343250
KC343492
KC343734
KC343976
D.eres
CBS 121004
Juglans
USA
KC343134
KC343376
KC343618
KC343860
KC344102
D.eres
CGMCC 3.17081
Lithocarpusglabra
China
KF576282
NA
NA
KF576257
KF576306
D.eres
CFCC 51632
Camptothecaacuminata
China
KY203726
KY228877
KY228881
KY228887
KY228893
D.eres
CBS 139.27
Celastrus
USA
KC343047
KC343289
KC343531
KC343773
KC344015
D.eres
CBS 143349
Vitisvinifera
United Kingdom
MG281017
MG281712
MG281363
MG281538
MG281190
D.eres
AR5193
Ulmus
Germany
KJ210529
KJ434999
KJ420850
KJ210550
KJ420799
D.eres
CFCC 52575
Castaneamollissima
China
MH121510
NA
MH121470
MH121552
MH121592
D.eres
CFCC 52576
Castaneamollissima
China
MH121511
MH121432
MH121471
MH121553
MH121593
D.eres
CFCC 52577
Acanthopanaxsenticosus
China
MH121512
MH121433
MH121472
MH121554
MH121594
D.eres
CFCC 52578
Sorbus
China
MH121513
MH121433
MH121473
MH121555
MH121595
D.eres
CFCC 52579
Juglansregia
China
MH121514
NA
MH121474
MH121556
NA
D.eres
CFCC 52580
Meliaazedarace
China
MH121515
NA
MH121475
MH121557
MH121596
D.eres
CFCC 52581
Rhododendronsimsii
China
MH121516
NA
MH121476
MH121558
MH121597
D.eres
MAFF 625034
Pyruspyrifolia
Japan
NA
KJ435023
KJ420868
NA
KJ420819
D.eres
AR5211
Hederahelix
France
KJ210538
KJ435043
KJ420875
KJ210559
KJ420828
D.eres
CGMCC 3.17089
Lithocarpusglabra
China
KF576267
NA
NA
KF576242
KF576291
D.eres
MFLUCC 17-0963
Lonicera
Italy
KY964190
KY964116
NA
KY964146
KY964073
D.eres
DAOM 695742
Picearuben
Canada
KU552025
NA
NA
KU552023
KU574615
D.eres
MFLUCC 16-0113
Prunuspersica
China
KU557563
NA
KU557611
KU557631
KU55758
D.eres
CBS 144.27
Spiraea
USA
KC343144
KC343386
KC343628
KC343870
KC344112
D.eres
CBS 587.79
Pinusparvifloravar
Japan
KC343153
KC343395
KC343637
KC343879
KC344121
D.eres
CBS 338.89
Hederahelix
Yugoslavia
KC343152
KC343394
KC343636
KC343878
KC344120
D.eres
MFLU 17-0646
Rosa
United Kingdom
MG828895
MG829274
NA
MG829270
MG843877
D.eucalyptorum
CBS 132525
Eucalyptus
China
MH305525
NA
NA
NA
NA
D.foeniculacea
CBS 111553
Foeniculumvulgare
Spain
MH854926
KC343343
KC343585
KC343827
KC344069
D.foeniculacea
CFCC 54192
Quercusrobur
Netherlands
MZ727033
NA
MZ753474
MZ816339
MZ753483
D.foeniculacea
M35
Quercusrobur
Netherlands
MZ727034
NA
MZ753475
MZ816340
MZ753484
D.foeniculacea
M40-1
Quercusrobur
Netherlands
MZ727035
NA
MZ753476
MZ816341
MZ753485
D.foeniculacea
M84
Quercusrobur
Netherlands
MZ727036
NA
MZ753477
MZ816342
MZ753486
D.fraxini-angustifoliae
BRIP 54781
Fraxinusangustifolia
Australia
JX862528
KT459462
NA
JX862534
NA
D.fraxinicola
CFCC 52582
Fraxinuschinensis
China
MH121517
MH121435
NA
MH121560
NA
D.fraxinicola
CFCC 52583
Fraxinuschinensis
China
MH121518
MH121436
NA
MH121559
NA
D.fulvicolor
PSCG 051
Pyruspyrifolia
China
MK626859
MK691132
MK726163
MK654806
MK691236
D.fusicola
CGMCC 3.17087
Lithocarpusglabra
China
KF576281
KF576233
NA
KF576256
KF576305
D.ganjae
CBS 180.91
Cannabissativa
USA
KC343112
KC343354
KC343596
KC343838
KC344080
D.ganzhouensis
CFCC 53087
Unknown
China
MK432665
MK442985
MK443010
MK578139
MK578065
D.ganzhouensis
CFCC 53088
Unknown
China
MK432666
MK442986
MK443011
MK578140
MK578066
D.garethjonesii
MFLUCC 12-0542a
Unknown
Thailand
KT459423
KT459470
NA
KT459457
KT459441
D.goulteri
BRIP 55657a
Helianthusannuus
Australia
KJ197290
NA
NA
KJ197252
KJ197270
D.grandiflori
SAUCC194.84
Heterostemmagrandiflorum
China
MT822612
MT855691
MT855580
MT855809
MT855924
D.guangxiensis
JZB320087
Vitisvinifera
China
MK335765
MK736720
NA
MK500161
MK523560
D.gulyae
BRIP 54025
Helianthusannuus
Australia
NA
NA
NA
JN645803
KJ197271
D.guttulata
CGMCC 3.20100
Unknown
China
MT385950
MW022470
MW022491
MT424685
MT424705
D.helianthi
CBS 592.81
Helianthusannuus
Serbia
KC343115
KC343357
KC343599
KC343841
KC344083
D.heliconiae
SAUCC194.77
Heliconiametallica
China
MT822605
MT855684
MT855573
MT855802
MT855917
D.heterophyllae
CPC 26215
Acaciaheterophylla
France
MG600222
MG600218
MG600220
MG600224
MG600226
D.heterostemmatis
SAUCC194.85
Heterostemmagrandiflorum
China
MT822613
MT855692
MT855581
MT855810
MT855925
D.hickoriae
CBS 145.26
Caryaglabra
USA
KC343118
KC343360
NA
KC343844
KC344086
D.hispaniae
CBS 143351
Vitisvinifera
Spain
MG281123
MG281820
MG281471
MG281644
MG281296
D.hongkongensis
CBS 115448
Dichroafebrifuga
China
MK304388
KC343361
KC343603
KC343845
KC344087
D.hubeiensis
JZB320123
Vitisvinifera
China
MK335809
MK500235
NA
MK523570
MK500148
D.incompleta
LC6754
Camelliasinensis
China
KX986794
KX999289
KX999265
KX999186
KX999226
D.inconspicua
CBS 133813
Maytenusilicifolia
Brazil
NA
KC343365
KC343607
KC343849
KC344091
D.infecunda
CBS 133812
Schinusterebinthifolius
Brazil
KC343126
KC343368
KC343610
KC343852
KC344094
D.irregularis
CGMCC 3.20092
Unknown
China
MT385951
MT424721
NA
MT424686
MT424706
D.isoberliniae
CPC 22549
Isoberliniaangolensis
Zambia
KJ869190
NA
NA
NA
KJ869245
D.juglandicola
CFCC 51134
Juglansmandshurica
China
KU985101
KX024616
KX024622
KX024628
KX024634
D.kadsurae
CFCC 52586
Kadsuralongipedunculata
China
MH121521
MH121439
MH121479
MH121563
MH121600
D.kadsurae
CFCC 52587
Kadsuralongipedunculata
China
MH121522
MH121440
MH121480
MH121564
MH121601
D.kochmanii
BRIP 54033
Helianthusannuus
Australia
NA
NA
NA
JN645809
NA
D.kongii
BRIP 54031
Helianthusannuus
Australia
NA
NA
NA
NA
KJ197272
D.lenispora
CGMCC 3.20101
Unknown
China
MT385952
MW022472
MW022493
MT424687
MT424707
D.litchicola
BRIP 54900
Litchichinensis
Australia
LC041036
NA
NA
JX862539
NA
D.litchii
SAUCC194.22
Litchichinensis
China
MT822550
MT855635
MT855519
MT855747
MT855863
D.lithocarpus
CGMCC 3.15175
Lithocarpusglabra
China
KC135104
KF576235
NA
KC153095
KF576311
D.longicolla
FAU599
Glycinemax
USA
KJ590728
KJ612124
KJ659188
KJ590767
KJ610883
D.longispora
CBS 194.36
Ribes
Canada
MH855769
KC343377
KC343619
KC343861
KC344103
D.lusitanicae
CBS 123212
Foeniculumvulgare
Portugal
MH863279
KC343378
KC343620
KC343862
KC344104
D.lutescens
SAUCC194.36
Chrysalidocarpuslutescens
China
MT822564
MT855647
MT855533
MT855761
MT855877
D.macadamiae
CBS 146455
Macadamia
Australia
MN708230
NA
NA
MN696528
MN696539
D.macintoshii
BRIP 55064a
Rapistrumrugosum
Australia
KJ197289
NA
NA
KJ197251
KJ197269
D.mahothocarpus
CGMCC 3.15181
Lithocarpusglabra
China
KC153096
NA
NA
KC153087
KF576312
D.malorum
CAA 734
Malusdomestica
Portugal
KY435638
KY435658
KY435648
KY435627
KY435668
D.masirevicii
BRIP 54256
Glycinemax
Australia
KJ197277
NA
NA
KJ197238
KJ197256
D.mayteni
CBS 133185
Maytenusilicifolia
Brazil
KC343139
KC343381
KC343623
KC343865
KC344107
D.maytenicola
CPC 21896
Maytenusacuminata
South Africa
KF777157
NA
NA
NA
KF777250
D.mediterranea
SAUCC194.111
Machiluspingii
China
MT822639
MT855718
MT855606
MT855836
MT855951
D.melastomatis
SAUCC194.55
Melastomamalabathricum
China
MT822583
MT855664
MT855551
MT855780
MT855896
D.melonis
CBS 435.87
Glycinesoja
Indonesia
KC343141
KC343383
KC343625
KC343867
KC344109
D.middletonii
BRIP 54884e
Rapistrumrugosum
Australia
KJ197286
NA
NA
KJ197248
KJ197266
D.minima
CGMCC 3.20097
Unknown
China
MT385953
MT424722
MW022496
MT424688
MT424708
D.minusculata
CGMCC 3.20098
Unknown
China
MT385957
MW022475
MW022499
MT424692
MT424712
D.miriciae
BRIP 54736j
Helianthusannuus
Australia
KJ197282
NA
NA
KJ197244
KJ197262
D.multigutullata
CFCC 53095
Citrusmaxima
China
MK432645
MK442967
MK442992
MK578121
MK578048
D.multigutullata
CFCC 53096
Citrusmaxima
China
MK432646
MK442968
MK442993
MK578122
MK578049
D.musigena
CBS 129519
Musa
Australia
KC343143
KC343385
KC343267
KC343869
KC344111
D.neoarctii
CBS 109490
Ambrosiatrifida
USA
KC343145
KC343387
KC343629
KC343871
KC344113
D.neoraonikayaporum
MFLUCC 14-1136
Tectonagrandis
Thailand
KU712449
KU749356
NA
KU749369
KU743988
D.nothofagi
BRIP 54801
Nothofaguscunninghamii
Australia
JX862530
NA
NA
JX862536
KF170922
D.novem
CBS 127269
Glycinemax
Croatia
KC343155
KC343397
KC343639
KC343881
KC344123
D.ocoteae
CPC 26217
Ocoteabullata
France
KX228293
NA
NA
NA
KX228388
D.oraccinii
LC3166
Camelliasinensis
China
KP267863
NA
KP293517
KP267937
KP293443
D.ovalispora
ZJUD93
Citruslimon
China
KJ490628
NA
KJ490570
KJ490507
KJ490449
D.ovoicicola
CGMCC 3.17093
Lithocarpusglabra
China
KF576265
KF576223
NA
KF576240
KF576289
D.oxe
CBS 133186
Maytenusilicifolia
Brazil
KC343164
KC343406
KC343648
KC343890
KC344132
D.padina
CFCC 52590
Padusracemosa
China
MH121525
MH121443
MH121483
MH121567
MH121604
D.padina
CFCC 52591
Padusracemosa
China
MH121526
MH121444
MH121484
MH121568
MH121605
D.pandanicola
MFLUCC 17-0607
Pandanaceae
Thailand
MG646974
NA
NA
NA
MG646930
D.paranensis
CBS 133184
Maytenusilicifolia
Brazil
KC343171
KC343413
KC343655
KC343897
KC344139
D.parapterocarpi
CPC 22729
Pterocarpusbrenanii
Zambia
KJ869138
NA
NA
NA
KJ869248
D.parvae
PSCG 035
Pyrusbretschneideri
China
MK626920
MK691169
MK726211
MK654859
MK691249
D.pascoei
BRIP 54847
Perseaamericana
Australia
MK111097
NA
NA
JX862538
KF170924
D.passiflorae
CPC 19183
Passifloraedulis
Netherlands
JX069860
NA
NA
NA
NA
D.passifloricola
CPC 27480
Passiflorafoetida
Malaysia
KX228292
NA
KX228367
NA
KX228387
D.penetriteum
LC3215
Camelliasinensis
China
KP267879
NA
NA
KP293532
KP267953
D.perjuncta
CBS 109745
Ulmusglabra
Austria
KC343172
KC343414
KC343656
KC343898
KC344140
D.perseae
CBS 151.73
Perseagratissima
Netherlands
KC343173
KC343415
NA
NA
NA
D.pescicola
MFLUCC 16-0105
Prunuspersica
China
KU557555
KU557603
NA
KY400831
KU557579
D.phaseolorum
AR4203
Phaseolusvulgaris
USA
KJ590738
KJ612135
KJ659220
KJ590739
KJ610893
D.phillipsii
CAA 817
Vacciniumcorymbosum
Portugal
MK792305
MK883831
MK871445
MK828076
MN000351
D.podocarpi-macrophylli
LC6155
Podocarpusmacrophyllus
Japan
KX986774
KX999278
KX999246
KX999167
KX999207
D.pometiae
SAUCC194.72
Pometiapinnata
China
MT822600
MT855679
MT855568
MT855797
MT855912
D.pseudoalnea
CFCC 54190
Alnusglutinosa
Netherlands
MZ727037
MZ753468
MZ781302
MZ816343
MZ753487
D.pseudoalnea
M2A
Alnusglutinosa
Netherlands
MZ727038
MZ753469
MZ753478
MZ816344
MZ753488
D.pseudomangiferae
CBS 101339
Mangiferaindica
Dominican Republic
KC343181
KC343423
KC343665
KC343907
KC344149
D.pseudophoenicicola
CBS 176.77
Mangiferaindica
Iraq
KC343183
KC343425
KC343667
KC343909
KC344151
D.pseudotsugae
MFLU 15-3228
Pseudotsugamenziesii
Italy
KY964225
KY964138
NA
KY964181
KY964108
D.psoraleae
CPC 21634
Psoraleapinnata
South Africa
KF777158
NA
NA
KF777245
KF777251
D.psoraleae-pinnatae
CPC 21638
Psoraleapinnata
South Africa
KF777159
NA
NA
NA
KF777252
D.pterocarpicola
MFLUCC 10-0580a
Pterocarpusindicus
Thailand
JQ619887
JX197433
NA
JX275403
JX275441
D.pungensis
SAUCC194.112
Elaeagnuspungens
China
MT822640
MT855719
MT855607
MT855837
MT855952
D.pyracanthae
CAA483
Pyracanthacoccinea
Portugal
KY435635
KY435645
KY435656
KY435625
KY435666
D.racemosae
CPC 26646
Euclearacemosa
South Africa
MG600223
MG600219
MG600221
MG600225
MG600227
D.raonikayaporum
CBS 133182
Spondiasmombin
Brazil
KC343188
KC343430
KC343672
KC343914
KC344156
D.ravennica
MFLUCC 16-0997
Clematisvitalba
Italy
NA
NA
NA
MT394670
NA
D.rhusicola
CPC 18191
Rhuspendulina
South Africa
JF951146
NA
NA
NA
NA
D.rosae
MFLUCC 17-2658
Rosa
United Kingdom
MG828894
MG829273
NA
NA
MG843878
D.rosiphthora
COAD 2914
Rosa
Brazil
MT311197
MT313691
NA
MT313693
NA
D.rossmaniae
CAA 762
Vacciniumcorymbosum
Portugal
MK792290
MK883822
MK871432
MK828063
MK837914
D.rostrata
CFCC 50062
Juglansmandshurica
China
KP208847
KP208849
KP208851
KP208853
KP208855
D.rostrata
CFCC 50063
Juglansmandshurica
China
KP208848
KP208850
KP208852
KP208854
KP208856
D.rudis
AR3422
Laburnumanagyroides
Austria
KC843331
KC843146
NA
KC843090
KC843177
D.rudis
CFCC 54193
Quercusrobur
Netherlands
MZ727039
MZ753470
MZ753479
MZ816345
MZ753489
D.rudis
M86
Quercusrobur
Netherlands
MZ727040
MZ753471
MZ753480
MZ816346
MZ753490
D.saccarata
CBS 116311
Protearepens
South Africa
KC343190
KC343432
KC343674
KC343916
KC344158
D.sackstonii
BRIP 54669b
Helianthusannuus
Australia
KJ197287
NA
NA
KJ197249
KJ197267
D.salicicola
BRIP 54825
Salixpurpurea
Australia
JX862531
NA
NA
JX862537
KF170923
D.sambucusii
CFCC 51986
Sambucuswilliamsii
China
KY852495
KY852499
KY852503
KY852507
KY852511
D.sambucusii
CFCC 51987
Sambucuswilliamsii
China
KY852496
KY852500
KY852504
KY852508
KY852512
D.schimae
CFCC 53103
Schimasuperba
China
MK442640
MK442962
MK442987
MK578116
MK578043
D.schimae
CFCC 53104
Schimasuperba
China
MK442641
MK442963
MK442988
MK578117
MK578044
D.schimae
CFCC 53105
Schimasuperba
China
MK442642
MK442964
MK442989
MK578118
MK578045
D.schini
CBS 133181
Schinusterebinthifolius
Brazil
KC343191
KC343433
KC343675
KC343917
KC344159
D.schisandrae
CFCC 51988
Schisandrachinensis
China
KY852497
KY852501
KY852505
KY852509
KY852513
D.schisandrae
CFCC 51989
Schisandrachinensis
China
KY852498
KY852502
KY852506
KY852510
KY852514
D.schoeni
MFLU 15-1279
Schoenusnigricans
Italy
KY964226
KY964139
NA
KY964182
KY964109
D.sclerotioides
CBS 296.67
Cucumissativus
Netherlands
MH858974
KC343435
KC343677
KC343919
KC344161
D.searlei
CBS 146456
Macadamia
Australia
MN708231
NA
NA
NA
MN696540
D.sennae
CFCC 51636
Sennabicapsularis
China
KY203724
KY228875
NA
KY228885
KY228891
D.sennae
CFCC 51637
Sennabicapsularis
China
KY203725
KY228876
NA
KY228886
KY228892
D.sennicola
CFCC 51634
Sennabicapsularis
China
KY203722
KY228873
KY228879
KY228883
KY228889
D.sennicola
CFCC 51635
Sennabicapsularis
China
KY203723
KY228874
KY228880
KY228884
KY228890
D.serafiniae
BRIP 55665a
Helianthusannuus
Australia
KJ197274
NA
NA
KJ197236
KJ197254
D.shaanxiensis
CFCC 53106
on branches of liana
China
MK432654
MK442976
MK443001
MK578130
NA
D.shaanxiensis
CFCC 53107
on branches of liana
China
MK432655
MK432977
MK432002
MK578131
NA
D.siamensis
MFLUCC 10-0573a
Dasymaschalon
Thailand
NA
JQ619897
NA
JX275393
JX275429
D.silvicola
CFCC 54191
Fraxinusexcelsior
Netherlands
MZ727041
MZ753472
MZ753481
MZ816347
MZ753491
D.silvicola
M79
Fraxinusexcelsior
Netherlands
MZ727042
MZ753473
MZ753482
MZ816348
MZ753492
D.sojae
FAU635
Glycinemax
USA
KJ590719
KJ612116
KJ659208
KJ590762
KJ610875
D.spartinicola
CPC 24951
Spartium junceμm
Spain
KR611879
NA
KR857696
NA
KR857695
D.spinosa
PSCG 383
Pyruspyrifolia
China
MK626849
MK691129
MK726156
MK654811
MK691234
D.sterilis
CBS 136969
Vacciniumcorymbosum
Italy
KJ160579
KJ160548
MF418350
KJ160611
KJ160528
D.stictica
CBS 370.54
Buxussampervirens
Italy
KC343212
KC343454
KC343696
KC343938
KC344180
D.subclavata
ZJUD95
Citrusunshiu
China
KJ490630
NA
KJ490572
KJ490509
KJ490451
D.subcylindrospora
KUMCC 17-0151
Unknown
China
MG746629
NA
NA
MG746630
MG746631
D.subellipicola
KUMCC 17-0153
Unknown
China
MG746632
NA
NA
MG746633
MG746634
D.subordinaria
CBS 464.90
Plantagolanceolata
South Africa
KC343214
KC343456
KC343698
KC343940
KC344182
D.taoicola
MFLUCC 16-0117
Prunuspersica
China
KU557567
NA
NA
KU557636
KU557591
D.tectonae
MFLUCC 12-0777
Tectonagrandis
Thailand
KU712430
KU749345
NA
KU749359
KU743977
D.tectonendophytica
MFLUCC 13-0471
Tectonagrandis
Thailand
KU712439
KU749354
NA
KU749367
KU743986
D.tectonigena
MFLUCC 12-0767
Camelliasinensis
China
KX986782
KX999284
KX999254
KX999174
KX999214
D.terebinthifolii
CBS 133180
Schinusterebinthifolius
Brazil
KC343216
KC343458
KC343700
KC343942
KC344184
D.ternstroemia
CGMCC 3.15183
Ternstroemiagymnanthera
China
KC153098
NA
NA
KC153089
NA
D.thunbergii
MFLUCC 10-0576a
Thunbergialaurifolia
Thailand
JQ619893
JX197440
NA
JX275409
NA
D.thunbergiicola
MFLUCC 12-0033
Thunbergialaurifolia
Thailand
KP715097
NA
NA
KP715098
NA
D.tibetensis
CFCC 51999
Juglandisregia
China
MF279843
MF279888
MF279828
MF279858
MF279873
D.tibetensis
CFCC 52000
Juglandisregia
China
MF279844
MF279889
MF279829
MF279859
MF279874
D.torilicola
MFLUCC 17-1051
Torilisarvensis
Italy
KY964212
KY964127
NA
KY964168
KY964096
D.toxica
CBS 534.93
Lupinusangustifolius
Australia
KC343220
KC343462
KC343704
KC343946
KC344188
D.tulliensis
BRIP 62248a
Theobromacacao
Australia
KR936130
NA
NA
KR936133
KR936132
D.ueckerae
FAU656T
Cucumismelo
USA
KJ590726
KJ612122
KJ659215
KJ590747
KJ610881
D.ukurunduensis
CFCC 52592
Acerukurunduense
China
MH121527
MH121445
MH121485
MH121569
NA
D.ukurunduensis
CFCC 52593
Acerukurunduense
China
MH121528
MH121446
MH121486
MH121570
NA
D.undulata
LC6624
Unknown
China
KX986798
NA
KX999269
KX999190
KX999230
D.unshiuensis
ZJUD52
Citrusunshiu
China
KJ490587
NA
KJ490529
KJ490466
KJ490408
D.unshiuensis
CFCC 52594
Caryaillinoensis
China
MH121529
MH121447
MH121487
MH121571
MH121606
D.unshiuensis
CFCC 52595
Caryaillinoensis
China
MH121530
MH121448
MH121488
MH121572
MH121607
D.vaccinii
CBS 160.32
Oxycoccusmacrocarpos
USA
MH121502
MH121426
MH121462
MH121544
MH121584
D.vangueriae
CBS 137985
Vangueriainfausta
Zambia
KJ869137
NA
NA
NA
KJ869247
D.vawdreyi
BRIP 57887a
Psidiumguajava
Australia
KR936126
NA
NA
KR936129
KR936128
D.velutina
LC4421
Neolitsea
China
KX986790
NA
KX999261
KX999182
KX999223
D.verniciicola
CFCC 53109
Verniciamontana
China
MK573944
MK574583
MK574599
MK574619
MK574639
D.verniciicola
CFCC 53110
Verniciamontana
China
MK573945
MK574584
MK574600
MK574620
MK574640
D.viniferae
JZB320071
Vitisvinifera
China
MK341551
MK500119
NA
MK500107
MK500112
D.virgiliae
CMW 40748
Virgiliaoroboides
South Africa
KP247556
NA
NA
NA
KP247575
D.xishuangbanica
LC6707
Camelliasinensis
China
KX986783
NA
KX999255
KX999175
KX999216
D.xunwuensis
CFCC 53085
Unknown
China
MK432663
MK442983
MK443008
MK578137
MK578063
D.xunwuensis
CFCC 53086
Unknown
China
MK432664
MK442984
MK443009
MK578138
MK578064
D.yunnanensis
LC6168
Unknown
China
KX986796
KX999290
KX999267
KX999188
KX999228
D.zaobaisu
PSCG 031
Pyrusbretschneideri
China
MK626922
NA
MK726207
MK654855
MK691245
Diaporthellacorylina
CBS 121124
Corylus
NA
KC343004
KC343246
KC343488
KC343730
KC343972
Note: NA, not applicable. Strains in this study are marked in bold.
Isolates and GenBank accession numbers used in the phylogenetic analyses of .Note: NA, not applicable. Strains in this study are marked in bold.
Results
Phylogenetic analyses
The five-gene sequence dataset (ITS, , , and ) was analysed to infer the interspecific relationships within . The dataset consisted of 307 sequences including one outgroup taxon, (CBS 121124). A total of 2649 characters including gaps (516 for ITS, 576 for , 526 for , 507 for and 524 for ) were included in the phylogenetic analysis. Of these characters, 844 were constant, 318 were variable and parsimony-uninformative, and 1487 were parsimony-informative. The topologies resulting from ML and BI analyses of the concatenated dataset were congruent (Fig. 1). Isolates from the present study formed four individual clades representing four species of , of which isolates CFCC 54192, M35, M40-1 and M84 from represent , while CFCC 54193 and M86 from represent . CFCC 54191 and M79 from and CFCC 54190 and M2A from represent two new species which are here described as and , respectively.
Figure 1.
Phylogram of resulting from a maximum likelihood analysis based on a combined matrix of ITS, , , and . Numbers above the branches indicate ML bootstraps (left, ML BS ≥ 50 %) and Bayesian Posterior Probabilities (right, BPP ≥ 0.75). The tree is rooted with . Isolates from present study are marked in blue.
Phylogram of resulting from a maximum likelihood analysis based on a combined matrix of ITS, , , and . Numbers above the branches indicate ML bootstraps (left, ML BS ≥ 50 %) and Bayesian Posterior Probabilities (right, BPP ≥ 0.75). The tree is rooted with . Isolates from present study are marked in blue.
Taxonomy
N. Jiang
sp. nov.ABC17B34-3B5B-5E2F-A337-152C8D79C8D9840714Fig. 2
Figure 2.
from A–C habit of conidiomata on branches D transverse section of conidiomata E longitudinal section through conidiomata F, G conidiophores and conidia H, I conidia. Scale bars: 2 mm (A), 500 μm (B, C, E), 200 μm (D), 10 μm (F–I).
Etymology.
With reference to , which was described from the same host genus, .
Description.
Conidiomata pycnidial, discoid, immersed in bark, scattered, erumpent through the bark surface, with a solitary locule. Locule 800–1250 μm diam., undivided. Conidiophores 22–68.5 × 1.5–3 μm (av. = 39.8 × 2.2 μm, n = 50), cylindrical, attenuate towards the apex, hyaline, slightly brown at base, phialidic, unbranched, straight or slightly curved. Alpha conidia (5.8–)7.1–8.9(–11.2) × (1.5–)1.8–2.2(–2.7) μm (av. = 7.9 × 2.0 μm, n = 50), L/W = 3.2–4.7 (av. = 3.8, n = 50), hyaline, aseptate, subcylindrical with a nearly rounded apex, multi-guttulate, sometimes acute at both ends. Beta conidia not observed.from A–C habit of conidiomata on branches D transverse section of conidiomata E longitudinal section through conidiomata F, G conidiophores and conidia H, I conidia. Scale bars: 2 mm (A), 500 μm (B, C, E), 200 μm (D), 10 μm (F–I).
Culture characters.
Colonies are initially white with fluffy aerial mycelium, becoming dirty white after 2 weeks, and conidiomata are randomly distributed with orange conidial drops oozing out of the ostioles.
Specimens examined.
NETHERLANDS. Utrecht City, on branches of , , 8 Apr. 2019, N. Jiang (holotype CAF800005 = JNH0001; ex-type living culture: CFCC 54190; other living culture: M2A).
Notes.
and were recorded from the host genus . Udayanga et al. (2014) investigated the lectotype of and revealed it as a species based on a well-developed ectostromata and the ascospores characteristics, and Jaklitsch and Voglmayr (2020) treated it as a synonym of . has been reported from the Czech Republic, Germany, the Netherlands and the USA, and both sexual and asexual morphs have been described (Udayanga et al. 2014). However, applying the GCPSR principle, has recently been considered to be a synonym of (Hilário et al. 2021), which has also been confirmed in our analyses where the ex-epitype isolate CBS 146.46 of is placed within the clade (Fig. 1). morphologically differs from (now ) by its longer conidiophores (22–68.5 × 1.5–3 μm in vs. 9–16 × 1–2 μm in ; Udayanga et al. 2014). In our multi-gene analyses, forms a distinct phylogenetic lineage which is placed remotely from the isolate CBS 146.46 of (Fig. 1).N. Jiang
sp. nov.A563ADB6-35CD-5A06-9D98-8A27FCC9D26A840715Fig. 3
Figure 3.
from A–C habit of conidiomata on branches D transverse section of conidiomata E longitudinal section through conidiomata F, I conidia G, H conidiophores and conidia. Scale bars: 2 mm (A), 1 mm (B), 500 μm (C), 200 μm (D, E), 10 μm (F–I).
Name from “silva” = forest and “-cola” = inhabiting; with reference to its woody host.Conidiomata pycnidial, conical, immersed in bark, scattered, erumpent through the bark surface, with a solitary locule. Locule 450–700 μm diam., undivided. Conidiophores 6.5–25 × 1.5–4 μm (av. = 15.4 × 2.4 μm, n = 50), cylindrical, attenuate towards the apex, hyaline, slightly brown, phialidic, unbranched, slightly curved. Alpha conidia (9.2–)10.1–12.3(–13.5) × (3.8–)4.2–4.9(–5.2) μm (av. = 11.5 × 4.5 μm, n = 50), L/W = 2.0–3.2 (av. = 2.5, n = 50), hyaline, aseptate, fusiform to oval, multi-guttulate, acute at both ends. Beta conidia not observed.from A–C habit of conidiomata on branches D transverse section of conidiomata E longitudinal section through conidiomata F, I conidia G, H conidiophores and conidia. Scale bars: 2 mm (A), 1 mm (B), 500 μm (C), 200 μm (D, E), 10 μm (F–I).Colonies are initially white, aerial mycelium turning grey at edges of plate, yellowish pigmentation developing in centre, conidiomata not produced until 2 weeks.NETHERLANDS. Utrecht City, on branches of in the forest ecosystem, , 6 Jun. 2019, N. Jiang (holotype CAF800006 = JNH0002; ex-type living culture: CFCC 54191; other living culture: M79).was reported from cv. Claret Ash in Australia (Tan et al. 2013). was described from in China (Yang et al. 2018). However, from in Netherlands differs from and by obviously larger alpha conidia (9.2–13.5 × 3.8–5.2 μm in vs. 4–10 × 2–3 μm in vs. 7–10 × 2.9–3.2 μm in ; Tan et al. 2013; Yang et al. 2018).
Discussion
In this study, branch-inhabiting species were sampled from , and in Utrecht, the Netherlands. Ten isolates were obtained and identified based on five combined loci (ITS, , , and ), as well as morphological characters from the natural substrates. The phylogenetic and morphological analyses revealed sp. nov. from , sp. nov. from , and and from .Phylogenetic analyses were conducted based on a combined DNA sequence matrix of five loci (ITS, , , and ) reported as useful markers to distinguish species of (Udayanga et al. 2014, 2015; Guarnaccia et al. 2017, 2018a, 2018b; Tibpromma et al. 2018; Yang et al. 2020; Dissanayake et al. 2020; Huang et al. 2021; Sun et al. 2021, Wang et al. 2021). The two novel species in this study can be distinguished from the other known species by all genes studied, but most effectively by , , and . The multi-locus phylogenetic analysis grouped the isolates in two new clades, which support the introduction of the new species.The utility of host association for species identification is limited because several species have wide host ranges (e.g., inhabits 282 different hosts; inhabits 44 different hosts), and multiple species can infect a single host (e.g., nineteen species are associated with pear cankers in China) (Guo et al. 2020; Farr and Rossman 2021). Thus, a polyphasic approach of morphological, cultural, ecological and molecular data to identify samples or to introduce new species is essential.