Pavlin D Mitev1,2, W J Briels3,4, Kersti Hermansson1. 1. Department of Chemistry-Ångström Laboratory, Uppsala University, Box 538, S-751 21, Uppsala, Sweden. 2. Uppsala Multidisciplinary Center for Advanced Computational Science, Uppsala University, Uppsala, SE-751 05, Sweden. 3. MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands. 4. IBI-4, Forschungszentrum Jülich, D-52425 Jülich, Germany.
Abstract
The CO2 molecule is weakly bound in water. Here we analyze the influence of a dissolved CO2 molecule on the structure and OH vibrational spectra of the surrounding water. From the analysis of ab initio molecular dynamics simulations (BLYP-D3) we present static (structure, coordination, H-bonding, tetrahedrality) and dynamical (OH vibrational spectra) properties of the water molecules as a function of distance from the solute. We find a weakly oscillatory variation ("ABBA") in the 'solution minus bulk water' spectrum. The origin of these features can largely be traced back to solvent-solute hard-core interactions which lead to variations in density and tetrahedrality when moving from the solute's vicinity out to the bulk region. The high-frequency peak in the solute-affected spectra is specifically analyzed and found to originate from both water OH groups that fulfill the geometric H-bond criteria, and from those that do not (dangling ones). Effectively, neither is hydrogen-bonded.
The CO2 molecule is weakly bound in water. Here we analyze the influence of a dissolved CO2 molecule on the structure and OH vibrational spectra of the surrounding water. From the analysis of ab initio molecular dynamics simulations (BLYP-D3) we present static (structure, coordination, H-bonding, tetrahedrality) and dynamical (OH vibrational spectra) properties of the water molecules as a function of distance from the solute. We find a weakly oscillatory variation ("ABBA") in the 'solution minus bulk water' spectrum. The origin of these features can largely be traced back to solvent-solute hard-core interactions which lead to variations in density and tetrahedrality when moving from the solute's vicinity out to the bulk region. The high-frequency peak in the solute-affected spectra is specifically analyzed and found to originate from both water OH groups that fulfill the geometric H-bond criteria, and from those that do not (dangling ones). Effectively, neither is hydrogen-bonded.
CO2–water
systems are among the most frequently
encountered fluid mixtures in and around the Earth [Duan and Zhang,
2006],[1] where they govern geological, environmental,
and biological processes that affect many aspects of our daily lives.
This is reflected in intense R&D efforts taking place in, for
example, the area of supercritical CO2, the design of “CO2-in-water” foams to improve oil extraction processes
in the petroleum industry,[2,3] tentative developments
of aqueous Na–CO2 and Li–CO2 battery
systems[4,5] and in the vast area of carbon capture and
sequestration in geological formations and ocean floor sediments.[6,7] An abundance of experimental and computational studies have been
devoted to elucidating the thermodynamic properties, the solubility,
and the equation of state of these systems. A summary of many of these
efforts has been presented in the Introduction of a recent paper[8] from the Paesani group.The present study
deals with a very dilute CO2−water
system, with emphasis on the influence exerted by the solute on the
surrounding water. Clearly, also with this particular focus, several
papers have already been published. On the theoretical side, we mention
statistical simulations with classical force-fields (see, e.g., refs (9−14)), MD simulations with many-body force-fields[8] generated from quantum-mechanical cluster calculations, as well
as simulations that retain the electrons, such as QM/MM-MD simulations[14,15] or ab initio MD (AIMD) simulations.[16−18] Many of these simulation studies emphasize structural properties,
like radial distribution functions, to discuss the featues of the
CO2 hydration. In addition a number of quantum-mechanical
studies of small CO2–water clusters, published throughout
the years, have added valuable insight concerning CO2–water
interactions. There seems to be an overall consensus that the carbon
dioxide–water interaction is weak, and of a nature that can
mostly be classified as hydrophobic.On the experimental side,
information about the CO2 hydration
shell structure from X-ray absorption spectroscopy,[11] together with thermodynamic information on solubility,
point toward the same conclusion. Besides structural and energetic
information, also experimental vibrational spectroscopy investigations[18−20] have been used to conclude that carbon dioxide may be considered
to be a more or less inert object when immersed in water. Clearly
this conclusion can only be drawn on the basis of indirect inference.
It is our aim to shed light on these latter claims by means of an
analysis of data obtained with ab initio molecular
dynamics simulations. The present study therefore naturally emphasizes
the influence of the CO2 solute on the vibrational properties
of water molecules in its neighborhood. We will present some structural
results as well, but mainly to have them available when discussing
the origin of the observed variations of water vibrations in the hydration
shell. A quick impression of density variations near the solute can
be obtained from Figure . The white lines in this figure are a guide to the eye to delineate
characteristic regions. They are the azimuthal projection of surfaces
of constant “Michelin” distances (see below).
Figure 1
Distribution
of water oxygen atoms (left) and hydrogen atoms (right)
around a dissolved CO2 molecule. Averages are taken over
the complete production run of 109 ps. Bins are rectangular tori with
cross sections of 0.0233 × 0.0233 Å2; contours
are according to the corresponding color bars. Since snapshots are
taken from a simulation with flexible carbon dioxide (∠OCO)
= 180° ± 7°), a local coordinate system was chosen,
with the z-axis along the bond between carbon and
the upper (solute) oxygen. The white lines are chosen to emphasize
characteristic shells in the oxygen distribution. Their radii are
2.7, 3.5, 5.3, and 5.5 Å, respectively.
Distribution
of water oxygen atoms (left) and hydrogen atoms (right)
around a dissolved CO2 molecule. Averages are taken over
the complete production run of 109 ps. Bins are rectangular tori with
cross sections of 0.0233 × 0.0233 Å2; contours
are according to the corresponding color bars. Since snapshots are
taken from a simulation with flexible carbon dioxide (∠OCO)
= 180° ± 7°), a local coordinate system was chosen,
with the z-axis along the bond between carbon and
the upper (solute) oxygen. The white lines are chosen to emphasize
characteristic shells in the oxygen distribution. Their radii are
2.7, 3.5, 5.3, and 5.5 Å, respectively.When discussing vibrational spectra, we will make extensive use
of calculated weighted vibrational difference spectra, to display
the perturbation caused by the CO2 solute on the vibrational
signatures of the solvent molecules. The method has been developed
and successfully applied in experimental vibrational spectroscopy.
It was first introduced as the “double-difference method”
by Lindgren et al.[21,22] to extract the OH spectrum originating
from the first hydration shell around cations and anions in aqueous
solution. Stangret et al.[23] developed a
related approach and exploited the possibility of gathering further
information from measurements on a larger number of concentrations.
Separately and partly together, these groups singled out the signatures
of the hydration shells of a whole range of cations and anions, and
reported their OH peak frequency values, as listed, e.g., in ref (24). For a different class
of solutes, Ben-Amotz and co-workers developed an essentially similar
strategy based on Raman measurements and multivariate curve resolution
(MCR) analysis to single out the “solute-affected” spectrum[25] from a solution spectrum and characterize the
solvation shell around organic molecules in aqueous or organic solvents.
In a collaborative experimental–computational effort,[18] this approach was turned into a tool to provide evidence for a phase transition in the water layer surrounding
a CO2 molecule at ambient temperatures, that would otherwise
have been very difficult to obtain. Our analyses in the current paper
build on the same AIMD simulation trajectories that were used in ref (18). Those simulations were
performed with the BLYP-D3 density functional, i.e., with dispersion
interactions taken into account. This is a logical approach as the
water–CO2 interaction is weak. For more information,
see section .In the vibrational analysis presented in the current paper, we
present three complementary types of spatially resolved vibrational
spectra. Such spectra are essentially inaccessible by experiments.
Thus, for example, power spectra for open systems are presented for consecutive “slices” around the
solute (the slices adhering to the shape of the solute). We will show
that by tiling these spectral slices together and subtracting the
standard OH power spectrum of bulk water we obtain a difference spectrum
that displays a shell-like variation of the OH frequency as a function
of distance from the CO2 solute. Moreover, we observe an
accompanying weak but significant variation of the water–water
H-bond structure.
Methods
Ab Initio Simulations
We carried out ab
initio molecular dynamics (AIMD)
simulations of carbon dioxide dissolved in liquid water. As a reference
system, we also ran a simulation of pure water. The trajectories from
these simulations were used in ref (18), but here we present additional analyses and
conclusions based on these data. We repeat the main details of the
simulations here.Pure water was modeled by 111 H2O molecules in a cubic box of length 14.917 Å with periodic
boundary conditions, corresponding to a density of 1.00 g per cubic
centimeter. The aqueous solution was created by removing one water
molecule and replacing it by a CO2 molecule giving a 0.5
m solution.The electronic structure calculations were carried
out using the
hybrid Gaussian plane-wave method[26] as
implemented in the QUICKSTEP/CP2K code.[27] We used triple-ζ valence doubly polarized (TZV2P) basis sets,
which have previously been shown to provide a good compromise between
accuracy and computational cost. The BLYP exchange correlation functional
was used and supplemented with the Grimme-D3(0) dispersion correction,[28] and the core electrons were treated by the Goedecker–Teter–Hutter
norm-conserving pseudopotentials.[29,30] Our molecular
dynamics simulations were of the Born–Oppenheimer type and
were carried out in the NVT ensemble with a Nosé–Hoover
thermostat chain, targeted at a temperature of 323 K, and a time step
of 0.25 fs. We chose this functional and computational setup because
they have been thoroughly investigated by Jonchière et al.[31] in their work on water, with generally good
results. Those authors found, however, that the theoretical phase
diagram of water was shifted in temperature by about 25 deg with respect
to the experimental phase diagram and that water in its liquid state
at room temperature was well described by simulations at 323 K and
a density of 1.00 g/cm3. In our simulations, averages were
collected from runs of 127 ps for pure water and 109 ps for the CO2(aq) system, preceded by 10 ps equilibration in both cases
in order to achieve reasonable dynamical equilibrium.As an
additional assessment of the quality of our computational
methods we have calculated various atom–atom radial distribution
functions (rdf) and plotted them in Figure together with corresponding rdfs from Riera
et al.[8] The latter were obtained with MD
simulations using many-body potentials fitted to CCSD(T) calculations
on a large class of mixed and pure molecular clusters containing up
to four molecules of CO2 or water. Given the high quality
of the quantum mechanical calculations, the respectable sizes of the
training sets and the molecular clusters, and the in-depth analysis
of the many-body fit-functions, these potentials must be considered
to form a benchmark for future models. It is therefore satisfying,
and slightly surprising given the substantial differences in quantum
mechanical methods used in the two studies, to note that the agreement
is excellent. The small difference in densities between the two simulations
has no influences on distances. Comparisons with other MD studies
of dilute CO2(aq) solutions do not display the same excellent
agreement with our rdfs as we found in Figure , although an overall agreement is generally
achieved. This holds for the DFT-based MD simulations of Leung et
al.[16] and Kumar et al.[17] and also for the Amber force-field based simulations of
England et al.[10] with some rdf curves reported
in Lam et al.[11] Only the Hartree–Fock-based
QM/MM-MD simulation results of Moin et al.[15] differ qualitatively from our results.
Figure 2
Atom–atom pair
distribution functions resulting from our
BLYP-D3 AIMD simulation (black solid lines), compared with those from
the MD simulation by Riera et al.[8] performed
with the many-body potential energy function MB-nrg based on high-level
quantum-mechanical calculations (dashed colored lines).
Atom–atom pair
distribution functions resulting from our
BLYP-D3 AIMD simulation (black solid lines), compared with those from
the MD simulation by Riera et al.[8] performed
with the many-body potential energy function MB-nrg based on high-level
quantum-mechanical calculations (dashed colored lines).
Analysis
Common structural and dynamical
properties such as radial distribution functions (rdf) and velocity
autocorrelation functions (vac(t)) were calculated using the TRAVIS
program package.[32] Power spectra were obtained
by normalizing the vacs such that their values at time zero were equal
to one, and next Fourier transforming them.[33] Notice that vac(t) is a single particle quantity. Modifications
made to calculate vacs for open subvolumes of the full simulation
box are described later in this section.
Michelin Regions
In order to facilitate a more intuitive
description of the hydration structure, we use the concept of Michelin
distances and regions defined by them. Thus, the Michelin distance r between the solute molecule
and an arbitrary point is the shortest of the distances from the point
to the solute’s three nuclei. The set of points with Michelin
distances equal to r defines a Michelin surface, and points with Michelin distances smaller
than r define a Michelin
region with volume V(r). A few such shells are marked in Figure , where they are delineated
by white lines. A Michelin shell is the region between
two Michelin surfaces with different radii, and it has volume ΔV(r,Δr) = V(r + Δr) – V(r).
Velocity
Autocorrelation Functions and Power Spectra for Open
Systems
As far as dynamics is concerned, we will concentrate
on the velocity autocorrelation functions of the hydrogen atoms in
our systems. All power spectra mentioned in the Results are obtained through Fourier transformation of these functions.
Since translational and orientational diffusion of water molecules
involve much longer time-scales than their normal mode vibrations,
the characteristics of the latter in frequency space are well separated
from the former. As a result, our spectra at high frequencies may
be compared with experimental IR and Raman spectra.In this
paper, we will make use of velocity autocorrelation functions for
open systems, here for part of the complete box. Since hydrogen atoms
may enter and leave the volume under investigation, the individual
time series used to calculate the velocity time autocorrelation functions
are of variable lengths. The correlator that we use to calculate vac(t) chooses with every trajectory i of length T a maximum correlation time
τ ≤ T. The corresponding velocity time autocorrelation
function vac(t) is then
calculated according towhere v(k) is the velocity of trajectory i at time k. Notice that we use for all t < τ the same number
of samples. The average vac(t) is then calculated
as the average of these vac(t) with weight proportional to T – τ:Here N is the total number of trajectories used in the analysis.
The Heaviside function Θ(τ – t) ensures that only trajectories are
taken for which τ > t.Once vac(t) is obtained, it is
normalized such
that its value at t = 0 is equal to one, after which
the result is Fourier transformed, yielding the power spectrum D(ω; r).
Weighted Difference Spectra
As has been done before
to analyze experimental spectra,[18,21−25] we quantify the influence of the solute on the dynamics of the hydrogen
oscillators of water in the neighborhood of the solute by partitioning
the calculated spectra into two contributions, one from bulk-like
water molecules and one from so-called solute-affected water molecules.
In order to take full advantage of the detailed information obtained
with particle based simulations, we apply the definition to Michelin
regions of various sizes indicated by r. We define the number of solute-affected hydrogen
oscillators, N(r), in that volume, and the
corresponding solute affected power spectrum, D(ω; r), according toHere D(ω; r)
is the average spectrum obtained with all N(r) hydrogen atoms in the Michelin region under consideration;
for its normalization see the previous item in this section. D(ω) is the average
spectrum of pure water. Since N(r) and D(ω; r) are obtained from the simulation,
and D(ω) is
a known function (obtained from a simulation of bulk water), the above
equation contains two unknowns, N(r) and D(ω; r). This means that with any given value
for N(r), the corresponding spectrum D(ω; r) can be obtained from the data. In
general the affected spectra obtained in this way will not be strictly
positive, which is physically nonsensical. The procedure then is to
let the smallest value of N(r) for which D(ω; r) is nowhere negative be the physically
relevant number of affected molecules in the region out to r. The corresponding D(ω; r) will be called the solute-affected,
or simply, the affected spectrum of the Michelin region around the
solute out to Michelin radius r. Similarly, N(r) will be called
the number of affected hydrogen oscillators in that region. The procedure
just described is the same as has been used in experimental studies,[18,21−25] where eq was applied
to the full illuminated region. Similarly, we too will sometimes apply
the equation to the full simulation box. The challenge for experimentalists
is to choose solute concentrations which are small enough for solute-molecules
not to influence each other, and at the same time large enough to
yield a good signal-to-noise ratio.A quick comment on the meaning
of this analysis is in order. As is clear from eq , we consider only two types of spectra, the
spectrum of a “pure water molecule” and the spectrum
of an “affected water molecule”. As emphasized above, D(ω) is the average
spectrum of a collection of oscillators characteristic of pure water.
Similarly, D(ω; r) is the average spectrum
of a collection of oscillators characteristic of the solution in the
region under consideration, a collection that is different from that
of pure water. D(ω; r) is then a single property
to quantify how much these collections differ when it comes to their
spectra.As a first, rather rough, function to picture the influence
of
the solute on the dynamics of the hydrogen oscillators at position r, we introduce the fraction, P(r), of affected oscillators in a thin shell
at Michelin distance r from the solute, according toP(r) may be interpreted
as the probability that a hydrogen oscillator in a sufficiently thin
Michelin shell at a distance r belongs to the class of molecules that give rise to D(ω; r). Like with radial distribution functions,
this definition is most informative in case the dynamics of the hydrogen
oscillators is reasonably uniform over Michelin shells. For most solute
molecules, including CO2, this is of course not strictly
the case, but the Michelin shells certainly improve the situation
compared to the usual spherical shells.
Results
We will now discuss the influence of the solute
on the OH-stretch
dynamics of the water molecules in its neighborhood. The OH-stretch
vibration is a very sensitive probe of the chemical environment of
the corresponding water molecule. Apart from very close to the solute
we do not expect large direct influences of the solute
but mostly indirect influences through changes of
densities and hydrogen-bonding. So, indirectly hard-core interactions,
being the cause of density oscillations around the solute, will be
important in determining the dynamics of the H atoms.
Structural
Properties
Figure displays the density of water oxygen atoms
around a CO2 molecule in the left half of the figure, and
that of the corresponding hydrogen atoms in the right half. Details
of the calculation are given in the caption. Since we are dealing
with a flexible solute, the z-axis of the plot has
been chosen along the bond from carbon to the upper solute oxygen
atom. The very small differences between the upper and lower halves
of the figure give an indication of the quality of the statistics.
The white lines in the figure are drawn at Michelin distances chosen
to visually display shells with roughly uniform oxygen densities;
i.e., the lines were placed to accentuate the gross features of the
oxygen distribution in the left part of the figure. The way the same
lines also capture the gross features of the hydrogen distribution
in the right-hand side of the figure is an interesting observation
in itself, and it tells us a lot about the structure and orientation
of the water molecules. On the oxygen side, we clearly recognize two
shells of excess hydration with a depletion zone in between. To a
good approximation, oxygen and hydrogen densities are homogeneous
within thin Michelin shells. The same holds true for other properties,
to be mentioned below. When discussing velocity power spectra of hydrogen
motion (see below), it will in general not be possible to obtain a
similar resolution as the one in Figure , and we must resort to calculating averages
over larger regions. On the basis of the homogeneity of local properties
within Michelin shells, we consider averaging over Michelin shells
to be the best solution.We now consider more closely the distribution
of hydrogen bonds around the solute. We do so by
comparing two types of H-bond coordination numbers, obtained either
by counting for each water molecule all hydrogen bonds that it donates
to CO2 or another water molecule and those accepted from
another water molecule (Figure a) or by counting only hydrogen bonds donated to the solute
(Figure b). The hydrogen
bond criteria used in this paper are as follows: a particular O–H···O
configuration qualifies as a hydrogen bond in the case that both RO···O < 3.5 Å and the
∠O···O–H angle < 30°. It should
be noted that the pixels displayed in Figures refer to oxygen positions. (This explains
why the inner contour near the solute’s waist in Figure a is similar to that of the
oxygen atoms in Figure .) Near the waist, the water molecules closest to the solute are
involved in about three hydrogen bonds. None of these are hydrogen
bonds to the solute, as may be inferred from the red waters near the
waist in Figure a
being absent in Figure b. The few hydrogen bonds that do occur between water and solute
are all with water molecules that reside very close to the oxygen
atoms of CO2 as seen in Figure b. Interestingly, the density of water–solute
H-bonds are larger in the northeast (and southeast) of the figure
than in the north (and south). This is an indication that the hydrogen
atoms in the north are located such that the water dipole points toward
the solute’s oxygen atom, which makes ∠O–H···O
too large to qualify as a hydrogen bond. In the northeast, water molecules
may donate a hydrogen atom more directly to the solute’s oxygen,
while still having a lot of orientational freedom to interact favorably
with the remaining water molecules.
Figure 3
Distribution of hydrogen bonds around
the solute. (a) Average number
of hydrogen bonds per water molecule, either to another water molecule,
or to the solute. (b) Only hydrogen bonds donated to the solute. The
color code in panel b is such that green refers to no hydrogen bond
and red indicates that all water molecules in this bin are involved
in a hydrogen bond to the solute. Data are shown for water molecules
within a Michelin radius less than 3.5 Å. In both plots, bins
are square tori with cross section of 5.44 × 10–4 Å2. Positions are taken to be the oxygen positions.
Distribution of hydrogen bonds around
the solute. (a) Average number
of hydrogen bonds per water molecule, either to another water molecule,
or to the solute. (b) Only hydrogen bonds donated to the solute. The
color code in panel b is such that green refers to no hydrogen bond
and red indicates that all water molecules in this bin are involved
in a hydrogen bond to the solute. Data are shown for water molecules
within a Michelin radius less than 3.5 Å. In both plots, bins
are square tori with cross section of 5.44 × 10–4 Å2. Positions are taken to be the oxygen positions.The reader should not be misled by the colorful
appearance of the
pixels in Figure b,
since the plot only gives a conditional property; i.e., out of those
water molecules which are found in a particular bin the percentage that has a hydrogen bond to the solute is displayed. Even when this
percentage is equal to 100, there may still be only very few waters
that are H-bonded to the solute, as indeed is the case here. To give
an impression of the latter, we mention that out of all hydrogen atoms
within a Michelin radius of 3.5 Å of the solute, on average only
0.244 hydrogen bonds with the solute occur per time frame. The average
lifetime of these hydrogen bonds was calculated to be 0.05 ps, slightly
longer than 0.01 ps in ref (17) or 0.02 ps in ref (15). This implies that a hydrogen bond with the solute is formed
every 0.2 ps, which then lives for 0.05 ps.Finally, we consider
H-bond coordination numbers at distances larger
than 2.7 Å. As seen in Figure a, H-bond coordination numbers
are slightly above average in the first solvation shell. Contrary
to the hydrogen number density, the density of hydrogen bonds simply
decays to its bulk value, and does not have the characteristic ripples
that result from hard-core interactions.As an additional characteristic
of the oxygen structure in the
solution around the solute, we have calculated the tetrahedrality, Q.[34,35] According to its name, tetrahedrality quantifies in a rotationally
invariant way, the similarity of the molecule’s immediate neighborhood
to a purely tetrahedral environment. Results are plotted in Figure in the form of Q – Q with Q =
0.67 being the average tetrahedrality in our BLYP-D3 bulk water. For
details see the caption of Figure . Q of
water oxygen k is defined asψ is
the angle between water oxygen atoms i and j as seen from oxygen atom k, and the sums i < j run over the six pairs that can
be selected from the four nearest water oxygens within a distance
of 4.0 Å from atom k. In the case where no four
neighbors can be found within the given range, molecule k is left out from consideration. In the case where all angles are
equal to the tetrahedral angle Q = 1, while Q = 0 in the case where all cos(ψ) values are randomly distributed. When applied to MD simulations
of ice I, the average
value of Q has been
found to be 0.99 with a very narrow distribution.[36]
Figure 4
2D map of the tetrahedrality of the local structure around the
water molecules. For each bin, the molecular tetrahedrality Qk has been averaged over all water molecules k in the given bin (cf. eq ), giving Q. Plotted are values of Q – Q with Q = 0.67. Bins are square
tori with intersection 0.0233 × 0.0233 Å2 = 5.44
× 10–4 Å2. Values run from
−0.76 to +0.34.
2D map of the tetrahedrality of the local structure around the
water molecules. For each bin, the molecular tetrahedrality Qk has been averaged over all water molecules k in the given bin (cf. eq ), giving Q. Plotted are values of Q – Q with Q = 0.67. Bins are square
tori with intersection 0.0233 × 0.0233 Å2 = 5.44
× 10–4 Å2. Values run from
−0.76 to +0.34.It is clearly seen that
tetrahedral order is enhanced at Michelin
distances between about 3.5 and 5 Å. This region encompasses
the broad density minimum of water oxygen atoms in the left part of Figure . Our result is in
agreement with the fact that tetrahedrality is prominent in ice which
has a density slightly below that of liquid water and with the simulation
results of Chiu et al.,[36] who found that
low-density amorphous ice has a Q value vastly higher than that of high-density amorphous ice.
Spectra
As a first global measure of the influence
of the solute on the vibrational spectra of the water molecules in
its neighborhood, we have plotted in Figure the probability P(r) that we defined in eq . Recall that P(r) is the fraction of oscillators
(in a thin shell near r) that belong to the class of affected oscillators.
See the discussion at the end of Section . When calculating power spectra and derived
quantities like P(r), we used the instantaneous
position of the hydrogen atom to decide whether the oscillator was
closer to the solute than the Michelin distance r or not.
Figure 5
Probability P that
a hydrogen oscillator is affected by the presence of the CO2 molecule, plotted as a function of the Michelin distance from that
molecule. The position of the oscillator is taken to be that of the
hydrogen atom. The horizontal axis starts at 2.25 Å and refers
to the Michelin distance from the solute.
Probability P that
a hydrogen oscillator is affected by the presence of the CO2 molecule, plotted as a function of the Michelin distance from that
molecule. The position of the oscillator is taken to be that of the
hydrogen atom. The horizontal axis starts at 2.25 Å and refers
to the Michelin distance from the solute.Two main features may be distinguished. First, the large values
of P(r) for very small Michelin radii, such
as r ≤ 2.7 Å,
imply that those oscillators that temporarily reside very close to
the solute are almost all affected by the presence of the solute;
i.e., their spectrum is different from that of bulk water. From a
comparison with the hydrogen-bond count in Figure b, we infer that, according to our geometric
criterion for hydrogen-bonding, these are the hydrogen atoms with
a large probability to hydrogen-bind to one of the oxygen atoms of
the solute. The effect quickly decays until P(r) reaches a minimum at a Michelin distance of 3 Å from
the solute. Second, beyond this minimum P(r) rises again to reach a plateau value of about 0.2 for Michelin
distances between 3.5 and 5.5 Å, after which P(r) gradually decays to zero. Notice that there is a little dip
in the plateau near 4 Å. It is striking that the minimum between
these two features occurs at distances where the tetrahedrality of
the water oxygen atoms (see Figure ) is about equal to that of pure water.In order
to obtain better insight in the type of influence that
the solute has on the hydrogen dynamics in the solvation shell, we
present in Figure solute-affected spectra, D(ω; r), for a series of Michelin volumes with different
radii. We restrict ourselves in this plot to a frequency range between
2500 and 3800 cm–1, which encompasses Raman-measured
frequencies characteristic of OH-stretch oscillators.[18] Data at lower frequencies than these are dominated by contributions
from other vibrational modes, such as diffusive translations and rotations
of the molecule as a whole. In our protocol for calculating spectra,
while varying N(r) in order to have D(ω; r) positive definite everywhere (see Section ) of course
the whole spectrum at all frequencies from 0 to 3800 cm–1 was considered.
Figure 6
Spectra D(ω; r) for various
Michelin volumes
with radii indicated. The ratio N(r)/N(r) is listed to the right of each spectrum. The reason
that the solute-affected spectrum becomes less noisy with decreasing
Michelin radius is that for the smaller volumes, the affected spectrum
is basically equal to the full spectrum, reflected by the fact that
for r = 2.5 Å the N(r) /N(r) ratio is
≈1, while for the entire box, the affected spectrum is only
a small contribution to the full spectrum, reflected in the ratio
being small. With decreasing Michelin volumes a sharp peak near 3650
cm–1 becomes dominant. Black lines represent the
spectrum of pure water.
Spectra D(ω; r) for various
Michelin volumes
with radii indicated. The ratio N(r)/N(r) is listed to the right of each spectrum. The reason
that the solute-affected spectrum becomes less noisy with decreasing
Michelin radius is that for the smaller volumes, the affected spectrum
is basically equal to the full spectrum, reflected by the fact that
for r = 2.5 Å the N(r) /N(r) ratio is
≈1, while for the entire box, the affected spectrum is only
a small contribution to the full spectrum, reflected in the ratio
being small. With decreasing Michelin volumes a sharp peak near 3650
cm–1 becomes dominant. Black lines represent the
spectrum of pure water.From the top to the bottom
in Figure , solute-affected
spectra are shown for Michelin
regions of increasing Michelin radius r. As mentioned at the beginning of this section,
the instantaneous hydrogen position determines whether the oscillator
belongs to the given region or not. The bottom curve was obtained
with oscillators from the entire box. For comparison, the spectrum
of pure water is included as a black line, and repeated in the top
panel as well. The main difference between the spectrum of pure water
and the total spectrum, i.e., the main intensity of the affected spectrum,
occurs at frequencies between 3000 and 3600 cm–1. Besides this, there is a small peak at about 3650 cm–1. With decreasing Michelin volume, these characteristics remain similar
until the smallest volumes are considered.We now concentrate
on the top curve in Figure , which presents the affected spectrum of
a Michelin region with radius r = 2.5 Å. Since P(r) in this region
was found to be very close to unity, see Figure , the top curve in Figure represents at the same time the affected as well as the total
spectrum. So, the top spectrum corresponds to a mixture of oscillators
hydrogen-bonded (according to our geometric criterion) to an oxygen
of CO2 (see Figure b), plus a few dangling bonds, and possibly some that are
hydrogen-bonded to other water molecules. Note that OH-oscillators
near the waist are associated with distances larger than 2.5 Å
and therefore do not contribute to the spectrum that we are discussing
now.In order to provide additional, qualitative understanding
of the top spectrum, we assume that all oscillators in this collection
move independently from each other. Their spectrum is then just the
sum of smoothed delta-peaks, one for each oscillator in the collection,
and may be interpreted as the probability density function (pdf) over
frequencies of the independent oscillators. We assume that the delta-peak
frequencies may to a good approximation be calculated using uncoupled
bond-stretching calculations,[37] meaning
that the bond under investigation is stretched and contracted in a
frozen environment and the corresponding electronic energy is calculated
using the same quantum chemical model as described in Section . Using the molecular energy
values along the scans to provide Born−Oppenheimer surfaces
on which the oscillators move, harmonic and anharmonic frequencies
can be calculated. It has been argued before[38] that near room temperature, anharmonic corrections are not captured
in power spectra of OH vibrations, which should therefore best be
compared with harmonic bond-stretching spectra.We have generated
a bond-stretching spectrum by calculating harmonic
frequencies for all oscillators in the selected collection (rM < 2.5 Å), and plotting the sum of
corresponding smoothed delta functions in Figure . Clearly the spectrum obtained in this way
(red line) is not a perfect representation of the power spectrum (black
line), also called density of states (DOS). In spite of such differences,
we judge the agreement between the two spectra reasonable enough to
accept the bond stretching method as an aid for interpreting the power
spectrum. In the figure, we distinguish three contributions to the
total spectrum: contributions from H atoms that are, according to
our geometric criteria, hydrogen-bonded to the solute (purple line),
contributions from H atoms hydrogen-bonded to water molecules (light
blue line), and those from dangling H atoms (green line). Both the
DOS and the bond-stretching spectrum have their maximum at frequencies
that are slightly down-shifted with respect to the gas-phase harmonic
value (3693 cm–1), with the DOS being down-shifted
twice as much as the bond-stretching spectrum. At the frequencies
near its maximum, the bond-stretching spectrum is almost completely
resulting from dangling H atoms and from those which are hydrogen-bonded
to CO2. As expected, the dangling bond contribution more
or less has a Gaussian shape with its maximum at the gas-phase frequency.
The contribution of the H atoms hydrogen-bonded to the solute may
be considered to be slightly shifted to lower frequencies, but the
statistics does not seem good enough to draw definite conclusions.
The similarity between the contributions from these two classes indicates
that from an electronic point of view, the alleged hydrogen-bonding
to CO2 has only very little effect on the calculated spectra.
This is in strong contrast to the contribution from those H atoms
within 2.5 Å from the solute that are hydrogen-bonded to other
water molecules; their harmonic frequencies are severely down-shifted
with respect to the gas-phase value as is also the case in bulk water.
It seems that our geometric criterion to decide about hydrogen-bonding
to the solute does not necessarily imply any electronic differences
between different classes.
Figure 7
Decomposition of the solute-affected power spectrum D(ω; r =2.5 Å) into contributions from
different OH
oscillator categories. Black line: spectrum D(ω; r) = D(ω; r)
for H-oscillators within a Michelin radius of 2.5 Å from CO2. Red line: bond-stretching spectrum obtained with 1581 H
atoms out of frames taken every 50 time steps during the whole run.
Based on our geometric H-bond criteria, the red spectrum has contributions
from 843 (25%) dangling H atoms (green line), 547 (16%) H atoms hydrogen-bonded
to CO2 (purple line), and 1991 (59%) H atoms hydrogen-bonded
to water molecules (light blue line). For reference, a vertical blue
line is drawn at the position of the calculated gas-phase harmonic
frequency.
Decomposition of the solute-affected power spectrum D(ω; r =2.5 Å) into contributions from
different OH
oscillator categories. Black line: spectrum D(ω; r) = D(ω; r)
for H-oscillators within a Michelin radius of 2.5 Å from CO2. Red line: bond-stretching spectrum obtained with 1581 H
atoms out of frames taken every 50 time steps during the whole run.
Based on our geometric H-bond criteria, the red spectrum has contributions
from 843 (25%) dangling H atoms (green line), 547 (16%) H atoms hydrogen-bonded
to CO2 (purple line), and 1991 (59%) H atoms hydrogen-bonded
to water molecules (light blue line). For reference, a vertical blue
line is drawn at the position of the calculated gas-phase harmonic
frequency.Returning now to Figure , we next slightly enlarge
the volume considered for calculating
the spectrum to a Michelin radius of 2.7 Å. As was already suggested
by the results in Figure , the fraction of affected oscillators goes down dramatically.
Two interesting effects can be observed in this spectrum. First, the
peak around 3650 cm–1 narrows substantially, and
second, the spectrum has developed a substantial intensity in the
frequency range between 3000 and 3600 cm–1. Including
increasingly more of the solvent by increasing the volume even further,
going down in Figure , the peak at 3650 cm–1 in the affected spectrum
continues to narrow and decrease, while at the same time the intensity
in the frequency range from 3000 to 3600 cm–1 increases
until it reaches a stable value for radii beyond about 6 Å.As mentioned before, the peak around 3650 cm–1 continues
to narrow with increasing Michelin volume used to calculate
the spectra. This is somewhat surprising. In principle the oscillators
that were responsible for the spectrum in the smaller volume up to
a Michelin radius of 2.5 Å are also present in the new volume,
up to a radius of 2.7 Å or larger. One would therefore expect
that their contribution to the total spectrum remains the same, and
that their contribution to the new affected spectrum only changes
in intensity relative to the rest of the spectrum, but not in form.
This is not in agreement with our findings and can only mean that
the assumption that the solution spectrum (either for the whole box
or for regions out to different r-values as in Figure ) is the weighted sum of just two spectra
is too simple. In order to extract more detailed, local information,
we now consider the solution spectra in a succession of sufficiently
thin Michelin shells with increasing Michelin radii r, i.e., the local spectra D(ω, r).To calculate power spectra
for Michelin shells with thicknesses
of 0.25 Å, we followed all individual hydrogen oscillators for
a time span of 375 fs, calculated their spectrum in the usual way,
and assigned each to the Michelin shell in which it resided most of
its time. It is clear that if the time span to calculate the spectra
is chosen too short, they will be sparsely sampled. On the other hand,
if this time span is chosen too large, the oscillator will have visited
several shells and have acquired spectra from each of them; in other
words the calculated spectra will be smoothed along the radius r. After some experimenting,
we settled for the given values. The results are shown in Figure a, with D(ω, r) being the spectrum attributed to the
shell between Michelin radii r and r + 0.25
Å, and in Figure b, in the form of the difference D(ω, r)
– D(ω).
Since the spectra are normalized to one oscillator, they do not depend
on the thickness dr of
the shell as long as this is small enough. The spectra are shown along
the frequency axis (abscissa) in color code and are stacked along
the Michelin radius (ordinate).
Figure 8
Spatially resolved spectra. (a) D(ω, r) spectrum obtained by following oscillators
for
375 fs, assigning the results to the bin where the hydrogen atom has
spent most of its time. Bins are Michelin shells of thicknes dr = 0.25 Å. (b) Nonweighted
difference spectra D(ω, r) – D(ω).
Spatially resolved spectra. (a) D(ω, r) spectrum obtained by following oscillators
for
375 fs, assigning the results to the bin where the hydrogen atom has
spent most of its time. Bins are Michelin shells of thicknes dr = 0.25 Å. (b) Nonweighted
difference spectra D(ω, r) – D(ω).It is clearly seen that at distances below about 2.7 Å
from
the solute, the affected OH-oscillators on average oscillate at frequencies
somewhat larger than where bulk water oscillates. In the difference
spectrum this is seen as a positive peak at high frequencies and a
negative peak at lower frequencies. These findings are the same as
in Figure . We call
the spectrum in this region an A-spectrum. Next, at distances between
2.7 and about 5 Å the opposite occurs; here the difference spectrum
is negative in the high frequencies and positive in the low frequencies.
We call the spectrum in this region a B-spectrum. This region corresponds
roughly to the region where the tetrahedrality is high. It is interesting
that the intensity of the B-spectrum is slightly decreased in shells
near 3.7 Å, so we actually discern two B-spectra in a row. The
distance where the separation occurs roughly corresponds to the end
of the propulsion of hydrogen density near the waist in Figure . Although it is difficult
to recognize the change from the first B-spectrum to the second in Figure , we do notice a
dip in the plateau in Figure at roughly this distance. Another surprising aspect is that
beyond a distance of 5 Å the spectrum in Figure b inverts again, in the sense that now the
high frequency intensity is again larger than in pure water; i.e.,
the spectrum becomes an A-spectrum again. Next, the difference spectrum
gradually fades away, such that beyond about 6.5 Å there is hardly
any difference anymore, in agreement with the results presented in Figure .It is well-known
that red-shifting (i.e., down-shifting) of the
OH-vibrations in water occurs as a consequence of hydrogen-bonding,
and usually the larger the shift is, the shorter the hydrogen bond
is. As a measure of the length of the hydrogen bond, we take the distance dH···O between the donated hydrogen
atom and the accepting oxygen. This measure is slightly advantageous
compared to using dO···O as correlations involving the latter distance tend to be somewhat
obscured by variations of the hydrogen bond angle. In Figure , we have plotted in color
code the probability density function of the hydrogen bond length dH···O minus the one for pure
water, for various values of the Michelin radius r and stacked them along the vertical
axis. For details see the figure caption. One clearly notices the
correlation with the plots in Figure b, i.e. where the spectrum is downshifted, P(dH···O; r) is shifted toward smaller
values of dH···O. So we
see the same ABBA structure as with the spectra. Using these data
we have calculated the average values ⟨dH···O(r)⟩, and found that in the two B parts of the hydration
shell ⟨dH···O(r)⟩ is smaller than
its bulk value by about 0.03 Å, while in the thin A region nearest
to the solute ⟨dH···O(r)⟩ is larger
than the bulk average by as much as about 0.5 Å. In the second
A region, a very small elongation is discernible of about 0.01 Å.
Figure 9
Probability
density function to find hydrogen-bond lengths dH···O for a given Michelin radius r. The figure displays this
probability, P(dH···O; r), minus its bulk
value P(dH···O). Results were averaged over Michelin
shells of thickness 0.25 Å near the corresponding Michelin radii r.
Probability
density function to find hydrogen-bond lengths dH···O for a given Michelin radius r. The figure displays this
probability, P(dH···O; r), minus its bulk
value P(dH···O). Results were averaged over Michelin
shells of thickness 0.25 Å near the corresponding Michelin radii r.We suggest that these results may be interpreted in the following
way. In the first A spectrum, near the solute, the spectrum has excess
intensity in the frequencies characteristic of a free OH-oscillator,
indicating that hardly any hydrogen-bonding to the solute occurs.
This agrees with our finding in Figure that even those OH groups in this region, that according
to our geometrical criterion qualify as being hydrogen-bonded to the
solute, do not qualify as such by any reasonable vibrational spectroscopy
criterion. We conclude that there is no appreciable hydrogen-bonding
between the water molecules and the solute in this region. The second
B spectrum in the region of r values between 3.7 and 5.2 Å coincides with a region
where hydrogen densities are small and tetrahedrality is larger than
average in pure water. Moreover, hydrogen-bonding appears to be stronger
than in bulk water with foreshortened ⟨dH···O(r)⟩ values compared to bulk water. On the basis of these
findings one may stipulate that water in this region in some respects
resembles water in ice. The second A region coincides with the second
shell of excess hydrogen density and small tetrahedrality. We stipulate
that these are signs that hydrogen-bonding is more difficult to achieve
in this region and existing hydrogen bonds are somewhat weakened with
respect to those in pure water. The first B region with r values between 2.7 and 3.7 Å is
rather peculiar. Here the hydrogen density is large, while also tetrahedrality
is large and the ⟨dH···O(r)⟩ hydrogen
bond distances are shortened. On the other hand, this Michelin region
is less homogeneous in its properties than other regions. The water
molecules near the solute's waist tend to donate hydrogen bonds
to
water molecules further out, and in the remaining part of the first
B region, the water molecules to a large extent lie “flat”,
i.e. along the Michelin surfaces.
Summary
and Conclusions
We have examined the perturbation that the
almost-hydrophobic CO2 solute causes on the surrounding
hydration shell, using AIMD
simulations and a variety of analysis tools including power spectra
for open systems. In particular, we presented space-resolved water
OH vibrational spectra collected from gradually larger Michelin regions
around the solute as well as from “slices” of the solution.
Our analyses reveal a weakly oscillatory variation of not only the
spectra but also of other properties, as a function of distance from
the solute.Thus, as for the static structural properties, we
find that the
distribution of water molecules around CO2, exemplified
by the distribution of oxygen atoms, is influenced by the solute over
length scales of a few times the range of repulsive forces and likewise
for the hydrogen atoms as they are bound to live near the oxygen atoms.
Properties like tetrahedrality and number of H-bonds per water molecule,
but also the power spectra of the hydrogen oscillators, depend in
principle on electrostatic and van der Waals interactions with the
solute, and on local densities, i.e., indirectly on excluded volume
effects.We have given special attention to the water molecules
very close
to the solute, some of which give rise to a distinct high-frequency
peak in the solute-affected spectra. Here we calculated uncoupled
bond-stretching spectra to help decipher the power spectrum. Thus,
assuming that all hydrogen atoms in this region move independently
from each other, we interpret the power spectrum, in the range of
frequencies corresponding to the internal dynamics of the water molecule,
as being a superposition of smoothed delta peaks, each corresponding
to an individual hydrogen atom at its particular position with respect
to the solute. Using instantaneous frames from the AIMD trajectory
as samples from the independent oscillator distribution we calculated
the spectrum by stretching the OwH bonds in their full
(and frozen) environments, and in each case, we calculated the in situ force constant of the OH bond. The OH oscillators
were classified according to our geometric H-bond criteria as taking
part in hydrogen bonds to water molecules, to the solute oxygen atoms,
or just freely dangling; we found that the spectra of the last two
populations hardly differ. This is an indication that the alleged
hydrogen-bonding to the solute’s oxygen is based on accidentally
meeting the geometrical hydrogen-bonding criteria, and not on corresponding
changes in the electronic structure (frequency downshift), leaving
only two OH classes close to the solute: the dangling ones and those
that are truly H-bonded (to other water molecules).
Authors: Othonas A Moultos; Ioannis N Tsimpanogiannis; Athanassios Z Panagiotopoulos; Ioannis G Economou Journal: J Phys Chem B Date: 2014-05-01 Impact factor: 2.991