Literature DB >> 30336013

Structure, Dynamics, and Hydration Free Energy of Carbon Dioxide in Aqueous Solution: A Quantum Mechanical/Molecular Mechanics Molecular Dynamics Thermodynamic Integration (QM/MM MD TI) Simulation Study.

Niko Prasetyo1,2,3, Thomas S Hofer1.   

Abstract

The solvation of carbon dioxide in solution represents a key step for the capture and fixation CO2 in nature, which may be further influenced by the formation of (bi)carbonate species and/or the formation of CO2 clusters in solution. The latter processes are strongly dependent on the exact environment of the liquid state (e.g., pH value, solvated ions, etc.) and may interfere with the experimental determination of structural, dynamical, and thermodynamic properties. In this work a hybrid quantum mechanical/molecular mechanical (QM/MM) simulation approach at correlated ab initio level of theory resolution-of-identity second-order Møller-Plesset Perturbation Theory (RI-MP2) has been applied in the framework of thermodynamic integration (TI) to study structure, dynamics, and the hydration free energy of a single carbon dioxide molecule in aqueous solution. A detailed analysis of the individual QM/MM potential energy contributions demonstrate that the overall potential remains highly consistent over the entire sampling phase and that no artificial contributions are influencing the determination of the hydration free energy. The latter value of 0.01 ± 0.92 kcal/mol was found in very good agreement with the values of 0.06 and 0.24 kcal/mol obtained via quasi-chemical theory and experimental measurements, respectively. In order to obtain detailed information about the C- and O C-water interaction, conically restricted regions with respect to the main axis of the CO2 molecule have been employed in structural analysis. The presented data not only provide detailed information about the hydration properties of CO2 but act as a critical validation of the simulation technique, which will be beneficial in the study of nonaqueous solvents such as pure and aqueous NH3 solutions, which have been suggested as potential candidates to capture CO2 from anthropogenic sources.

Entities:  

Year:  2018        PMID: 30336013     DOI: 10.1021/acs.jctc.8b00557

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  6 in total

1.  The Impact of Electron Correlation on Describing QM/MM Interactions in the Attendant Molecular Dynamics Simulations of CO in Myoglobin.

Authors:  Xianwei Wang; Chenhui Lu; Maoyou Yang
Journal:  Sci Rep       Date:  2020-05-22       Impact factor: 4.379

2.  Analysis of the Ordering Effects in Anthraquinone Thin Films and Its Potential Application for Sodium Ion Batteries.

Authors:  Daniel Werner; Dogukan H Apaydin; Dominik Wielend; Katharina Geistlinger; Wahyu D Saputri; Ulrich J Griesser; Emil Dražević; Thomas S Hofer; Engelbert Portenkirchner
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2021-02-10       Impact factor: 4.126

3.  Space-Resolved OH Vibrational Spectra of the Hydration Shell around CO2.

Authors:  Pavlin D Mitev; W J Briels; Kersti Hermansson
Journal:  J Phys Chem B       Date:  2021-12-20       Impact factor: 2.991

4.  Understanding CO2 capture kinetics and energetics by ionic liquids with molecular dynamics simulation.

Authors:  Fan Yang; Xianjuan Wang; Yang Liu; Yanmei Yang; Mingwen Zhao; Xiangdong Liu; Weifeng Li
Journal:  RSC Adv       Date:  2020-04-06       Impact factor: 3.361

Review 5.  Advanced Theory and Simulation to Guide the Development of CO2 Capture Solvents.

Authors:  Loukas Kollias; Difan Zhang; Sarah I Allec; Manh-Thuong Nguyen; Mal-Soon Lee; David C Cantu; Roger Rousseau; Vassiliki-Alexandra Glezakou
Journal:  ACS Omega       Date:  2022-04-04

6.  Tuning the binding behaviors of a protein YAP65WW domain on graphenic nano-sheets with boron or nitrogen atom doping.

Authors:  Xiao Jia; Yanmei Yang; Yang Liu; Weihua Niu; Yong-Qiang Li; Mingwen Zhao; Yuguang Mu; Weifeng Li
Journal:  Nanoscale Adv       Date:  2020-08-26
  6 in total

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