Literature DB >> 34927211

Different soil salinity imparts clear alteration in rhizospheric bacterial community dynamics in rice and peanut.

Md Majharul Islam1, Rajarshi Bhattacharya2, Biraj Sarkar1, Pulak Kumar Maiti1, Shouvik Mahanty3, Punarbasu Chaudhuri3, Swadesh Ranjan Biswas2, Sukhendu Mandal4.   

Abstract

The rhizospheric microbiome is capable of changing the physio-chemical properties of its own micro-environment and found to be indispensable in the overall health of the hostplant. The interplay between the rhizospheric environment and the microbiota residing therein tune the physiology of the associated plant. In this study, we have determined how the soil properties and the host-plant remains as an important parameter for microbial community dynamics in the rhizosphere of rice and peanut. In addition to check the physio-chemical parameters of the rhizospheric soil, we have also prepared the metagenomic DNA from each rhizospheric soil followed by high-throughput sequencing and sequence analysis to predict the OTUs that represents the community structure. The alpha-diversity of the bacterial community in the RRN sample was highest, while the lowest was in PRS sample. Actinobacteria is the most predominant phylum in PRN, PRS and RRN, whereas Acidobacteria in RRS. We found a clear shift in bacterial community over the rice and peanut rhizosphere and also over these host-rhizospheres from normal and high saline region. The rhizospheric bacterial community composition found to be affected by the close-by environmental factors. Thus, the rhizospheric bacterial community structure is related to both the adjoining soil characters and the type of the hosts.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Environmental factor; Metagenome; Microbial community; Microbial ecology; Rhizosphere; Soil salinity

Mesh:

Substances:

Year:  2021        PMID: 34927211     DOI: 10.1007/s00203-021-02695-8

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  27 in total

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Authors:  Robert C Edgar
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Authors:  Jacqueline M Chaparro; Dayakar V Badri; Jorge M Vivanco
Journal:  ISME J       Date:  2013-11-07       Impact factor: 10.302

3.  Sedimentation and trace metal distribution in selected locations of Sundarbans mangroves and Hooghly estuary, northeast coast of India.

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4.  Microbiomes inhabiting rice roots and rhizosphere.

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5.  [Resistance to +Gz and +Gx loads of subjects in older age groups, healthy and with initial signs of atherosclerosis].

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Journal:  Kosm Biol Aviakosm Med       Date:  1985 May-Jun

6.  Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties.

Authors:  Anja B Dohrmann; Meike Küting; Sebastian Jünemann; Sebastian Jaenicke; Andreas Schlüter; Christoph C Tebbe
Journal:  ISME J       Date:  2012-07-12       Impact factor: 10.302

7.  Elucidation of rice rhizosphere metagenome in relation to methane and nitrogen metabolism under elevated carbon dioxide and temperature using whole genome metagenomic approach.

Authors:  P Bhattacharyya; K S Roy; M Das; S Ray; D Balachandar; S Karthikeyan; A K Nayak; T Mohapatra
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Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

9.  Plant Growth Promoting Bacteria Associated with Langsdorffia hypogaea-Rhizosphere-Host Biological Interface: A Neglected Model of Bacterial Prospection.

Authors:  Érica B Felestrino; Iara F Santiago; Luana da Silva Freitas; Luiz H Rosa; Sérvio P Ribeiro; Leandro M Moreira
Journal:  Front Microbiol       Date:  2017-02-10       Impact factor: 5.640

10.  Ribosomal Database Project: data and tools for high throughput rRNA analysis.

Authors:  James R Cole; Qiong Wang; Jordan A Fish; Benli Chai; Donna M McGarrell; Yanni Sun; C Titus Brown; Andrea Porras-Alfaro; Cheryl R Kuske; James M Tiedje
Journal:  Nucleic Acids Res       Date:  2013-11-27       Impact factor: 16.971

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  1 in total

1.  Seasonal Variation Imparts the Shift in Endophytic Bacterial Community Between Mango and its Hemiparasites.

Authors:  Rajsekhar Adhikary; Sukhendu Mandal; Vivekananda Mandal
Journal:  Curr Microbiol       Date:  2022-08-12       Impact factor: 2.343

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