Literature DB >> 34926888

EDA-NOCV Calculation for Efficient N2 Binding to the Reduced Ni3S8 Complex: Estimation of Ni-N2 Intrinsic Interaction Energies.

Sai Manoj N V T Gorantla1, Kartik Chandra Mondal1.   

Abstract

The binding of the dinitrogen molecule to the metal center is the first and crucial step toward dinitrogen activation. Favorable interaction energies are desired by chemists and biochemists to study model complexes in the laboratory. An electrochemically reduced form of a previously isolated sulfur-bridged Ni3S8 complex is inferred to bind N2 at multiple Ni centers, and this bonded N2 undergoes reductive protonation to produce hydrazine (N2H4) as the product in the presence of a proton donor. Density functional theory (DFT) calculations and quantum theory of atoms in molecules (QTAIM) analysis have been carried out to shed light on the nature of N2 binding to an anionic trinuclear Ni3S8 complex. Additionally, energy decomposition analysis with the combination of natural orbital for chemical valence (EDA-NOCV) analysis has been performed to estimate the pairwise interaction energies between the Ni center and the N2 molecule under experimental conditions.
© 2021 The Authors. Published by American Chemical Society.

Entities:  

Year:  2021        PMID: 34926888      PMCID: PMC8674922          DOI: 10.1021/acsomega.1c03715

Source DB:  PubMed          Journal:  ACS Omega        ISSN: 2470-1343


Introduction

The binding of aerial dinitrogen (N2) followed by its reduction are some of the most important natural biochemical processes.[1−5] N2 is the most abundant gas in the earth’s atmosphere, accounting for roughly 78% of all components. The respiratory process involves O2 despite such a high abundance of N2 in the earth’s atmosphere, owing to the kinetic inertness of the N≡N bond. Furthermore, the nonpolar N2 molecule possesses two deep-lying pairs of electrons (:N≡N:) making N2 itself a poor donor ligand.[6] Sulfur-bridged molybdenum-iron (MoFe7S9C1–)-based nitrogenase enzymes (FeMoco) can bind aerial N2 under a reduced state and catalyze reduction leading to the formation of ammonia.[1−3,5] It should be noted that active binding sites of metalloenzymes Ni-superoxide dismutase[7,8] and Ni–Fe hydrogenase[9,10] possess S-donor bridges. The metal ion-containing inorganic units are well protected by the proteins that surround them to prevent them from undergoing undesired oxidation reactions.[1] Chemists and biochemists have come up with the syntheses, isolations, and characterizations of several model complexes to study their electronic structures and chemical properties under different conditions, including binding with CO and N2.[11−30] The redox properties have been often studied using cyclic voltammetry. Over the last decade, there has been a significant increase in research efforts focused on N2 binding at metal (M) centers, followed by activation of the N≡N bond via reductive protonation.[15] Several metal complexes, which possess a bond with N2 in the reduced oxidation state of M, have been isolated, characterized, and further studied using spectroscopic techniques (M = Fe, Mo, Os, Ru, Re, etc.).[11−18] The reductive protonation of N2 can lead to the formation of either ammonia (NH3) or hydrazine (N2H4) or sometimes a mixture of both.[11−30] These reports mostly focus on changes in N–N bond orders, which are computed by estimating Wiberg bond order P(N–N) values to compare them to experimentally determined N–N bond lengths.[15,17,24−26] Authors of these previous reports have often pointed out that π back-donation from metal to N2 (M → N2) is crucial for the weakening of the N≡N bond. The reductive electron transfer from external reducing agents to the metal center is very important. The higher the accumulation of electron densities on metal atoms, the higher the π back-donation from metal to N2 (Scheme ).[17,24−26] In recent times, there have been several reports on the first-row transition metal-based dinitrogen activation (M = V, Fe, Ni, Co, Ni, Cu).[27] Very recently, N2 binding has been reported to take place at the electron-deficient boron center of boron-cyclic-alkyl-amino-carbene compounds.[28] Moreover, reductive protonation leading to the formation of NH3 has been successfully achieved.[28] These boron compounds are highlighted to be equivalent to metal complexes that can perform a similar job.[29] However, there is no report on the estimation of M–N2 interaction energies showing the extent of π back-donation from M → N2 and σ-donation from N2 → M (M = transition metal).[30] The N≡N bond of the free dinitrogen (N2) is quite strong. The energy decomposition analysis with the combination of natural orbital for chemical valence (EDA–NOCV) analysis of free N2 molecule showed that 30% of the total interaction energy between two interacting N atoms is only contributed by electrostatic energy (ΔEelstat) and the remaining 70% is orbital interaction energy (ΔEorb).[6b] The charge separation (q) and dipole moment (μ) are zero. The Pauli repulsion energy (ΔEPauli) between two interacting N atoms is quite high, preventing the two nuclei from further coming closer (dN—N = 1.102 Å). The Wiberg bond order P(N–N) has been estimated to be 3.03. The orbital interaction energy (ΔEorb) is further split into two parts [for σ(3σg+) + π(1πu) orbitals]. The σ interaction is 65.6% while the π-interaction is nearly half (34.4%). These two interactions (σ + π) combined to give the total orbital interaction energy (ΔEorb).[6b] Most importantly, doubly degenerate π*-orbitals (1πg) of N2, which are composed of the p and p atomic orbitals of two interacting N atoms, are quite high in energy (1πg; lowest unoccupied molecular orbital (LUMO)). The LUMO + 1 is 3σu+, and the highest occupied molecular orbital (HOMO) is N–N σ(3σg+) orbital.[6b]
Scheme 1

Interacting Orbitals between Metal (M) and N2

It has been often found that the reductive protonation of (L)M(N2) can lead to the formation of NH3 or N2H4 under mild conditions.[31−34] The latter’s enthalpy of formation is known to be endothermic by +159.2 kJ mol–1, whereas that of the former is exothermic. Furthermore, a huge amount of energy is stored in N2H4, which can be released by both chemical and electrochemical methods without any energy barrier. Hydrazine is utilized as rocket fuel due to its very high energy storage density [1.5368 × 1010 J m–3/4269 Wh L–1 (chemical/electrochemical)].[35−37] Recently, an isolated U-shaped dianionic complex (LS2)4Ni(II)32– (LS22– = –S–(CH2)3–S–) (abbreviated as Ni3S8 complex)[38] has been shown to electrochemically produce hydrazine (N2H4) in the presence of PhOH as a proton donor. There is no illustration or research on N2 binding and its electrochemical reduction processes. Herein, we report density functional theory (DFT), quantum theory of atoms in molecules (QTAIM), and EDA–NOCV calculations[39−48] to shed light on the binding of N2 at the Ni center. We have further investigated the bonding scenarios and estimated the pairwise interaction energies between the electrochemically reduced (NiII → NiI) Ni center and N2 molecules.

Results and Discussion

The dianionic complex Ni3S8 [(LS2)4Ni(II)32–; (LS22– = –S–(CH2)3–S–)] has been previously characterized using X-ray single-crystal diffraction.[38] This anionic trinuclear Ni(II)-based complex is composed of three Ni(II) ions and four dianionic S-donor ligands (LS22–). The central Ni(II) [NiC] is connected to two terminal Ni(II) centers [NiT] by four μ–SL bridges (Scheme , left). All three Ni(II) ions have adopted a distorted square planar geometry. The Ni–S bond lengths range from 2.202(3) to 2.265(3) Å. The S–Ni–S angles around the square planar NiC center are 78.49/78.55° and 101.17/101.81° while the corresponding angles around the two NiT centers are 76.16–76.66/93.76–99.22° and 94.86–95.49/92.33–92.68°.[38] The deviation from the regular square planar geometry of central NiC is greater than those of terminal NiT centers (Scheme , left). The NiT–NiC distances are 2.9161(19)–2.9396(19) Å. The six-membered (LS2)Ni(II) unit can have different conformations (distorted chair and boat similar to cyclohexane). The cyclic voltammetry (CV) measurement in tetrahydrofuran (THF) showed two reduction processes −2.20 and −2.40 V vs fc+/fc under both argon and dinitrogen atmospheres in the absence of a proton source, suggesting the reduction of square planar NiII ion to paramagnetic NiI ion [(LS2)4Ni(II)32– + e– → (LS2)4Ni(II)2Ni(I)3–].[38] The electrochemical formation of tetra-anion [(LS2)4Ni(II)2Ni(I)3– + e– → (LS2)4Ni(II)Ni(I)24–] at −2.40 V cannot be excluded either. Interestingly, these two values are reported to shift to −2.35 and −2.85 V vs fc+/fc, respectively, under the N2 atmosphere in the presence of PhOH, suggesting possible H-bonding interactions between H–OPh and S-atoms of the dianionic complex.[38] However, its mononuclear Ni(II) analogue does not show electrochemical N2 reduction.[38]
Scheme 2

Proposed Scheme of N2 Binding to the Ni3Si8 Unit of Complex (LS2)4Ni(II)32–[39]

We have performed geometry optimization of the dinitrogen-encapsulated dianionic (Ni3S8)N2 complex (1) containing three Ni(II) centers in its singlet and triplet states at the BP86-D3(BJ)/Def2TZVPP level of theory [1 = (LS2)4(N2)Ni(II)32–; LS22– = –S–(CH2)3–S–] (Schemes and ). The singlet state of 1 is more stable than its triplet state by 30.3 kcal mol–1. The binding of dinitrogen molecule (N2) to the trinuclear (LS2)4(N2)Ni(II)32– complex in an end-on/side-on fashion to the central Ni and charge donations from the two terminal Ni atoms has been previously shown, as presented in Scheme A,B.[38]
Scheme 3

Structures of Optimized Geometries of Dianionic Singlet (Complex 1) and Trianionic Doublet States with End-On (2) and Side-On (3) Overlap of the (Ni3Si8)N2 Complex

We tried to optimize the singlet-state (LS2)4(N2)Ni(II)32– in end-on (A) and side-on (B) fashions as shown in Scheme . Eventually, the side-on (B) input geometry led to optimization in the end-on mode (A). We further performed the geometry optimization of the singlet state in an end-on and side-on fashion at the M06-2x-D3 level using the Def2TZVPP basis set (see the Supporting Information). The calculations at M06-2x-D3/Def2TZVPP also suggest the preference for the end-on position (A). The optimized geometries of singlet states both at the BP86-D3(BJ) and M06-2x-D3 levels show that the N2 does not bind to the central Ni(II) center and instead stays aloft within the cavity of the complex at a distance of 3.55 Å from the central Ni(II) (NiC) and 3.03–3.54 Å from the two terminal Ni atoms (NiT). Figure shows that one of the N atoms of N2 is significantly close to the left-sided terminal Ni(II) center (3.03 Å), suggesting a slightly higher preference for the terminal Ni(II) center over the central Ni(II) center. The distance between the two terminal Ni atoms, NiT–NiT (Scheme ), in the singlet-state optimized structure is 5.22 Å (gas phase) and 5.09 Å (THF), which is slightly longer than the NiT–NiT distance of 4.90 Å in the experimentally reported[39] crystal structure of the original dianionic Ni3S8 complex [(LS2)4Ni(II)32–; Scheme , left] containing H-bonded (LS2···H–O–H) water molecules inside the cavity. This implies the slight widening (0.19 Å in THF) of the cavity to facilitate the interaction of N2. The bridging sulfur (SB) atoms of the ligand (LS22–) are at a 2.20 Å distance from the central Ni(II) (NiC) and 2.25–2.27 Å from the two terminal Ni atoms (NiT), while the terminal sulfur atoms (ST) are at a distance of 2.20–2.21 Å from the terminal Ni atoms (NiT) (Figure ). The values correlated well with the experimental values of 2.18–2.20 Å for NiC–SB, 2.23–2.26 Å for NiT–SB, and 2.18–2.21 Å for NiT–ST in the original N3S8 cluster.[39] Referring to Figures and S1, the values calculated at BP86-D3(BJ)/Def2TZVPP matched well with the experimental values compared to those calculated at M06-2x-D3/Def2TZVPP. Hence, we further report only the values calculated at the BP86-D3(BJ) level. The authors showed that the Ni3S8 complex under a N2 atmosphere electrocatalytically reduced N2 at −2.35 V in the presence of a proton source (PhOH) representing the nitrogen reduction reaction (NRR). We attempted to optimize the dianionic and diamagnetic (Ni3S8)N2 complex [(Ni3S8)N2 (1) + e– → 2 or 3] as a radical anion by adding one electron. This represents one-electron reduction in both end-on and side-on modes of N2 binding to the central Ni atom (A and B). To our surprise, the optimization in the end-on fashion resulted in a geometry (Figure and Schemes and ) with N2 bonded to central NiC (complex 2), while the optimization in the side-on fashion resulted in N2 bonded to one of the terminal NiT atoms (complex 3) rather than the central Ni as shown in Scheme in the gas phase. However, the optimization of complex 3 in THF did not lead to N2 binding to the terminal Ni and instead, it stayed in the cavity, similar to complex 1. The N2 binding to the original Ni3S8 complex occurs only under the electrochemically reduced condition, which is analogous to the nitrogenase FeMoco cofactor. Under the resting state of the nitrogenase enzyme, the FeMoco cofactor does not bind to N2 and rather binds only under reduced conditions.[1−3,5] Our calculations suggest that the cavity further expands on the direct binding of N2 with Ni, as shown by the NiT–NiT distances of 5.84 Å (gas) and 5.81 Å (THF) in complex 2 and 6.16 Å in complex 3 (gas). Ni(I)C of 2 is 0.72 Å above the S4 plane, and the Ni(I)C–S bond lengths in 2 significantly increase, whereas Ni(I)T of 3 is 0.20 Å above the S4 plane, and the Ni–S distances around Ni(I)T of 3 increase slightly. Energetically, one-electron reduction of 1 leading to 2 is favored by −23.1 kcal mol–1 (ΔG298) in THF. This is the electron affinity value of 1. In comparison, the same process is highly endothermic (+117.0 kcal mol–1) in the gas phase, suggesting a favorable stabilizing ion–dipole interaction between the complex and the THF solvent molecules (Scheme S1). The dissociation of N2 is slightly exothermic for both complexes 2 and 3 and the exothermicity is relatively higher in reduced complex 2 (ΔG298 = −13.5 kcal mol–1) than in complex 3 (ΔG298 = −1.13 kcal mol–1) in the gas phase. Energetically, complex 3 is relatively more stable than complex 2 by 11.1 kcal mol–1 (gas). We have also evaluated the complexes under study for the presence of a multireference character by performing coupled-cluster calculations on the optimized geometries. The calculations showed T1 diagnostics of 0.04, 0.038, and 0.043 for complexes 1, 2, and 3, respectively, revealing the absence of a multireference character.[49]
Figure 1

Optimized geometries of dianionic singlet (complex 1) and trianionic doublet states with end-on (2) and side-on (3) N2-bonded (Ni3Si8)N2 complexes at the BP86-D3(BJ)/Def2TZVPP level. Wiberg bond order P(N–N) values: 2.95 (1), 2.63, (2) and 2.79 (3).

Optimized geometries of dianionic singlet (complex 1) and trianionic doublet states with end-on (2) and side-on (3) N2-bonded (Ni3Si8)N2 complexes at the BP86-D3(BJ)/Def2TZVPP level. Wiberg bond order P(N–N) values: 2.95 (1), 2.63, (2) and 2.79 (3).

Computational Method

The above observations made us curious about the nature of the Ni–N2 bond in such complexes. We have employed charge and energy density methods such as natural bond orbital (NBO), quantum theory of atoms in molecules (QTAIM), and energy decomposition analysis coupled with natural orbitals for chemical valence (EDA–NOCV)[6] methods to study the nature of the Ni–N bond in the gas-phase optimized geometries. The details of the methods are provided in the Supporting Information. The EDA–NOCV method is more appropriate in explaining the nature of the bond as one of the major strengths of the method is its ability to provide the best bonding model to represent the bonding situation in the equilibrium geometry. The EDA–NOCV method involves the decomposition of the intrinsic interaction energy (ΔEint) between two fragments into four energy components as followswhere the electrostatic term (ΔEelstat) is from the interpenetrating charges of the nuclei of the two fragments that attract the electron cloud of the opposite fragment and the orbital term (ΔEorb) is from the mixing and relaxation of the orbitals, charge transfer, and polarization between the isolated fragments. The dispersion term (ΔEdisp) is from the noncovalent interactions and, in particular, weak London forces between the two interacting fragments. While the above three terms constitute attractive forces, the Pauli term (ΔEPauli) arises due to the repulsion between the same electron spin of the two fragments. All four terms are represented as the difference between the two interacting fragments before and after bond formation. The corresponding deformation electron densities are represented by the direction of the charge flow red → blue. See the Supporting Information for the detailed computational part. The natural charge from NBO analysis of (LS2)4(N2)Ni(II)32– (1; Ni3S8N2) shows that the total charge on three Ni atoms decreases upon interacting or binding to N2. The slight decrease in charge in the singlet complex indicates that N2 interacts with the Ni atoms through the electron clouds, and the decrease in charge is more prominent when N2 is directly bound to Ni as in reduced complexes 2 and 3 (Figures S5–S8). Similarly, charge dipoles are created on the otherwise neutral N2 unit upon interacting or binding with Ni, suggesting a charge flow from Ni → N2 (Table S1). The results suggest a Wiberg bond order of 2.95 for N2 in the encapsulated resting complex 1, 2.63 in the reduced trianionic complex 2 with end-on bonded N2 at the central Ni(I) ion, and 2.79 in the reduced trianionic complex 3 with side-on bonded N2. The reduced bond orders compared to that of free dinitrogen (3.03) correlated well with the N–N bond lengths in complexes 1, 2, and 3 (Figure ) and indicated the weakening of the N–N bond, which is a crucial step in the activation of N2. The α-SOMO-2 of the radical anion complex (3) with side-on overlap represents the π interaction between the d orbital of Ni and the p orbital of N2, while α-SOMO-3 indicates the σ interaction between the d2 orbital of Ni and the p orbital of N2 (Figure S4). The molecular orbital analysis of the alternative reduced complex (2) with N2 bonded to the central Ni in an end-on fashion shows three π interactions represented by α-SOMO-2, α-SOMO-8, and α-SOMO-9 and one σ interaction indicated by α-SOMO-1 (Figure S3). The calculations suggest a Wiberg bond order of 0.70 for the NiC–N bond in complex 2 with an electron occupancy of 0.98 e, which is highly polarized toward N (88%), and 0.30 for the Ni–N bond in complex 3 (Table S2). The calculations did not provide bond occupancy for the Ni–N bond in complex 3. The AIM analysis shows solid bond paths for the Ni–N bond for both complexes 2 and 3 supporting the direct bonding of N2 with Ni (Figure S10). The calculations suggest considerable electron density (ρr) at (3, −1) bond critical point (BCP) for complex 2 and a very low electron density at BCP for complex 3 (Table S3). The difference in electron densities at BCPs can be related to shorter and longer Ni–N bond lengths in complexes 2 and 3, respectively (Figure ). We have considered the trianionic reduced Ni3S8 fragment in doublet state and the neutral N2 fragment in singlet state for the EDA–NOCV method to give the best bonding description. The isomeric reduced complex 2 shows a higher intrinsic interaction (24.0 kcal mol–1) than complex 3 (13.8 kcal mol–1), due to an increase in electrostatic contribution and a slight reduction in the orbital contribution of complex 2 relative to that of complex 3 (Table ). The low intrinsic interaction of the reduced complex 3 (Table ) correlates well with the long Ni–N bond length (2.447 Å) (Figure ). The total orbital interactions contribute a major 45.5% to the total attractive interactions, while the electrostatic interactions contribute 38.7%. The dispersion interactions also play a major role in stabilizing the Ni–N bond by contributing not-very-less 15.8% of total attractive interactions. While the electrostatic contributions in 2 provide 50.5% of the total attractive interactions, the orbital interactions contribute 44.5% and the contribution of dispersion interactions is rather small (5.0%). Based on the abovementioned contributions, it can be inferred that the Ni–N bond is slightly more covalent in complex 3, whereas it is slightly more electrostatic in complex 2 (Table ). The EDA–NOCV results of complex 2 optimized in THF are almost similar to calculations on the gas-phase optimized geometry with a minor difference of around 2 kcal mol–1 lower than the gas-phase calculations (Table S4).
Table 1

EDA–NOCV Results at the BP86-D3(BJ)/TZ2P Level of Ni3Si8–N2 Bonds of [(Ni3Si8)N2]•– Radical Anion Complexes (2 and 3) Using Singly Charged [Ni3Si8]•– in the Electronic Doublet State and the Neutral N2 Fragment Electronic Singlet State as Interacting Fragmentsc

energyinteraction[Ni3Si8]•– (D) + [N2] (S) end-on (2)[Ni3Si8]•– (D) + [N2] (S) side-on (3)
ΔEint –24.0–13.8
ΔEPauli 164.240.0
ΔEdispa –9.5 (5.0%)–8.5 (15.8%)
ΔEelstatb –95.0 (50.5%)–20.8 (38.7%)
ΔEorbb –83.7 (44.5%)–24.5 (45.5%)
ΔEorb(1)bNi3Si8–N2 σ polarization–26.3 (31.5%) 
 Ni3Si8 → N2 π back-donation –16.4 (67.0%)
ΔEorb(2)bNi3Si8 ← N2 σ donation–6.0 (7.1%)–2.7 (11.0%)
ΔEorb(3)bNi3Si8 → N2 π back-donation–24.7 (29.5%) 
 Ni3Si8 → N2 π back-donation –2.3 (9.4%)
ΔEorb(4)bNi3Si8 → N2 π back-donation–20.1 (24.0%) 
ΔEorb(rest)b –6.6 (7.9%)–3.1 (12.6%)

The values in parentheses show the contribution to the total attractive interaction ΔEelstat + ΔEorb + ΔEdisp.

The values in parentheses show the contribution to the total orbital interaction ΔEorb.

Energies are in kcal mol–1.

The values in parentheses show the contribution to the total attractive interaction ΔEelstat + ΔEorb + ΔEdisp. The values in parentheses show the contribution to the total orbital interaction ΔEorb. Energies are in kcal mol–1. The pairwise breakdown of total orbital interactions provides further insight into the nature of the bonding (Table ). The deformation densities and associated molecular orbitals of the fragments, as shown in Figures and 3, illustrate the type of interactions and the direction of charge flow from red → blue. The first orbital term ΔEorb(1) of complex 3 represents π back-donation from the d2 orbital of Ni into the vacant π(p)* orbital of N2 (d2(Ni) → πN2*) and contributes 67% of the total orbital interactions. The second orbital term ΔEorb(2) indicates σ electron donation from (3σg+) HOMO of N2 into the high-lying vacant orbital of Ni (N2 → Ni) contributing 11% to the total orbital interactions, whereas the third orbital term ΔEorb(3) represents π back-donation from the d orbital of Ni into the vacant LUMO’ π(p)* orbital of N2 (d(Ni) → πN2*), which contributes 9.4% to the total orbital interactions. Note that the isosurface values for ΔEorb(2-3) are smaller than those of ΔEorb(1) because otherwise, the minor contributions of the metal atomic orbitals would not be visible (Figure ). The π back-donations from metal orbitals (Ni → N2) are significantly stronger than σ donation from N2 to Ni (N2 → Ni) in complex 3. The bent orientation of N2 in complex 3 makes the π donation possible from Ni → N2.
Figure 2

Shape of the deformation densities Δρ(1)–(3) that correspond to ΔEorb(1)–(3) and the associated MOs of [(Ni3Si8)N2]•– (3) and the fragment orbitals of [Ni3Si8]•– in doublet state and N2 in the singlet state at the BP86-D3(BJ)/TZ2P level. Isosurface values of 0.003 au for Δρ(1) and 0.0003 au for Δρ(2–3). The eigenvalues |ν| give the size of the charge migration in e. The direction of the charge flow of the deformation densities is red → blue.

Figure 3

Shape of the deformation densities Δρ(1)–(4) that correspond to ΔEorb(1)–(4) and the associated MOs of [(Ni3Si8)N2]•– (2) and the fragment orbitals of [Ni3Si8]•– in doublet state and N2 in the singlet state at the BP86-D3(BJ)/TZ2P level. Isosurface values of 0.003 au for Δρ(1–4). The eigenvalues |ν| give the size of the charge migration in e. The direction of the charge flow of the deformation densities is red → blue.

Shape of the deformation densities Δρ(1)–(3) that correspond to ΔEorb(1)–(3) and the associated MOs of [(Ni3Si8)N2]•– (3) and the fragment orbitals of [Ni3Si8]•– in doublet state and N2 in the singlet state at the BP86-D3(BJ)/TZ2P level. Isosurface values of 0.003 au for Δρ(1) and 0.0003 au for Δρ(2–3). The eigenvalues |ν| give the size of the charge migration in e. The direction of the charge flow of the deformation densities is red → blue. Shape of the deformation densities Δρ(1)–(4) that correspond to ΔEorb(1)–(4) and the associated MOs of [(Ni3Si8)N2]•– (2) and the fragment orbitals of [Ni3Si8]•– in doublet state and N2 in the singlet state at the BP86-D3(BJ)/TZ2P level. Isosurface values of 0.003 au for Δρ(1–4). The eigenvalues |ν| give the size of the charge migration in e. The direction of the charge flow of the deformation densities is red → blue. The pairwise breakdown of orbital interactions in complex 2 reveals that the first orbital term ΔEorb(1) denotes σ polarization between the d2 orbital of Ni and the (3σg+) HOMO of N2, while the second orbital term ΔEorb(2) represents σ electron donation from the sigma (ungerade) orbital of N2 into the LUMO + 4 orbital of Ni, together contributing 38.6% to the total orbital interactions (Figure ). Whereas the third ΔEorb(3) and fourth orbital terms ΔEorb(4) represent π back-donations from d and d orbitals of Ni into vacant π(p)* and π(p)* orbitals of N2, respectively, together contributing 53.5% of the total orbital interactions. The π back-donations from metal orbitals are stronger than those of σ donations from N2 in complex 2 and is in good agreement with the bonding analysis of M–N bonds in matrix-isolated triplet M(N2)8 (M = Ca, Sr, Ba) complexes where N–N bonds are dominated by [M(dπ)] → (N2)8 π back-donations from metal orbitals.[30] The stronger π back-donations in complexes 2 and 3 agree well with the charge distribution and reduced Wiberg bond orders from NBO analysis. The deformation densities correlated well with the MOs of complexes 2 and 3. Our further calculations suggest that the proton on the N2 unit of 2 or 3 species jumps to one of the ST atoms with the dissociation of N2 from the Ni center. Hence, it is proposed that further reduction intermediate of 2 or 3 species is inferred, leading to the formation of a doubly reduced tetraionic complex 4 with two Ni(I) centers (one NiT and NiC).

Conclusions

In conclusion, we carried out quantum chemical calculations on the U-shaped sulfur-bridged dianionic diamagnetic Ni3S8 complex to understand the nature of N2 binding under electrochemical conditions. The calculations suggest that the encapsulation of one N2 molecule in the cavity is energetically favorable. The left-to-right arm length of the U-shape complex changes on N2 encapsulation. The binding of N2 at the triplet state of the Ni3S8 complex costs 30 kcal mol–1, which is not feasible under the resting state of this complex. Under electrochemical conditions, N2 can bind either at the central Ni(I) (2) or terminal Ni(I) (3) ion at −2.40 V in the presence of PhOH. The Wiberg bond order decreases from 3.03 in free N2 to 2.95 in N2-encapsulated resting complex 1, 2.63 in reduced trianionic complex 2 with end-on bonded N2 at the central Ni(I) ion, and 2.79 in reduced trianionic complex 3 with side-on bonded N2. The Ni–N distance is significantly shorter in 2 than in 3, and the overall Ni–N interaction energy is higher in 2 (with end-on bonded N2) than in 3 (with side-on bonded N2). Complex 2 shows higher electrostatic contribution and a slight reduction in the orbital contribution relative to that of complex 3. However, the magnitude of the orbital interaction energy is higher in 2 than that of 3. The EDA–NOCV results reveal that the Ni–N bond is slightly more covalent in complex 3, whereas it is slightly more electrostatic in complex 2. Additional calculation shows that the protonation of 2/3 leads to the dissociation of the N2 molecule from the reduced complex, and hence, it is suggested that the tetra-anionic form of the Ni3S8 complex is more likely (Scheme ) to undergo protonation toward the electrochemical formation of N2H4 either in a “distal” or in an “alternating” pathway.[1,15,23] In both the complexes, π back-donation from nickel to N2 (M → N2) is much stronger than dinitrogen-to-nickel (N2 → M) σ-donation, although Yamabe et al. suggested the opposite 4 decades ago.[50] Previously, only one paramagnetic Ni-containing zeolite has been studied by ETS–NOCV toward end-on O2 binding.[51] The EDA–NOCV analysis reveals the stability of complex 2 over complex 3. Energetically, one-electron reduction of 1 leading to 2 is also favored by −23.1 kcal mol–1 (ΔG298) in THF.
Scheme 4

Most Plausible Mechanism for the N2 Binding of the Ni3S8 Dianionic Complex under Electrochemical Reduced Conditions [Ni3S8 + N2 → 1 + e–→ 2/3 + e– → 4]

Violet Ni atoms are Ni(I).

Most Plausible Mechanism for the N2 Binding of the Ni3S8 Dianionic Complex under Electrochemical Reduced Conditions [Ni3S8 + N2 → 1 + e–→ 2/3 + e– → 4]

Violet Ni atoms are Ni(I).
  35 in total

1.  Low-temperature N2 binding to two-coordinate L2Fe(0) enables reductive trapping of L2FeN2(-) and NH3 generation.

Authors:  Gaël Ung; Jonas C Peters
Journal:  Angew Chem Int Ed Engl       Date:  2014-11-13       Impact factor: 15.336

2.  Applications of natural orbitals for chemical valence in a description of bonding in conjugated molecules.

Authors:  Mariusz Mitoraj; Artur Michalak
Journal:  J Mol Model       Date:  2008-02-16       Impact factor: 1.810

3.  Chemical Bonding and Bonding Models of Main-Group Compounds.

Authors:  Lili Zhao; Sudip Pan; Nicole Holzmann; Peter Schwerdtfeger; Gernot Frenking
Journal:  Chem Rev       Date:  2019-06-28       Impact factor: 60.622

4.  Examination of the nickel site structure and reaction mechanism in Streptomyces seoulensis superoxide dismutase.

Authors:  S B Choudhury; J W Lee; G Davidson; Y I Yim; K Bose; M L Sharma; S O Kang; D E Cabelli; M J Maroney
Journal:  Biochemistry       Date:  1999-03-23       Impact factor: 3.162

5.  Dinitrogen activation upon reduction of a triiron(II) complex.

Authors:  Yousoon Lee; Forrest T Sloane; Geneviève Blondin; Khalil A Abboud; Ricardo García-Serres; Leslie J Murray
Journal:  Angew Chem Int Ed Engl       Date:  2014-12-11       Impact factor: 15.336

6.  Reduction of Dinitrogen to Ammonia Catalyzed by Molybdenum Diamido Complexes.

Authors:  Lasantha A Wickramasinghe; Takaya Ogawa; Richard R Schrock; Peter Müller
Journal:  J Am Chem Soc       Date:  2017-06-27       Impact factor: 15.419

7.  Triggering N(2) uptake via redox-induced expulsion of coordinated NH(3) and N(2) silylation at trigonal bipyramidal iron.

Authors:  Yunho Lee; Neal P Mankad; Jonas C Peters
Journal:  Nat Chem       Date:  2010-05-16       Impact factor: 24.427

8.  Nickel superoxide dismutase structure and mechanism.

Authors:  David P Barondeau; Carey J Kassmann; Cami K Bruns; John A Tainer; Elizabeth D Getzoff
Journal:  Biochemistry       Date:  2004-06-29       Impact factor: 3.162

9.  Climbing nitrogenase: toward a mechanism of enzymatic nitrogen fixation.

Authors:  Brian M Hoffman; Dennis R Dean; Lance C Seefeldt
Journal:  Acc Chem Res       Date:  2009-05-19       Impact factor: 22.384

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.