| Literature DB >> 34919691 |
Chava L Ramspek1, Lucy Teece2, Kym I E Snell3, Marie Evans4, Richard D Riley3, Maarten van Smeden5, Nan van Geloven6, Merel van Diepen1.
Abstract
BACKGROUND: External validation of prognostic models is necessary to assess the accuracy and generalizability of the model to new patients. If models are validated in a setting in which competing events occur, these competing risks should be accounted for when comparing predicted risks to observed outcomes.Entities:
Keywords: Prediction; calibration; competing risks; discrimination; external validation; prognostic model
Mesh:
Year: 2022 PMID: 34919691 PMCID: PMC9082803 DOI: 10.1093/ije/dyab256
Source DB: PubMed Journal: Int J Epidemiol ISSN: 0300-5771 Impact factor: 9.685
Glossary
| Prediction horizon | The specified time period over which predictions are made; in our clinical validation, this is 2 and 5 years |
| Event of interest | The primary event that is being predicted; in our clinical validation study, this is kidney failure |
| Competing event | Any events that may preclude the primary event from happening, in this case death without kidney failure |
| Absolute risk | The cumulative risk of the event of interest within the prediction horizon, given that patients may be censored and patients with a competing event will not experience the event of interest. This risk is also referred to as real-world risk, actual risk, crude risk or cumulative incidence. It can be calculated through a non-parametric cumulative incidence function, which is also termed an Aalen-Johansen estimator |
| Predicted risk | The risk predictions (output) from a prediction model over the specified prediction horizon. In this study, we assume that the predicted risks are available, calculated from an existing model. The accuracy and precision of these predicted risks are evaluated in external validation |
| Observed probability | The observed rate of the event of interest in the validation cohort, which is compared with the predicted risk. If there is no censoring and no competing events, this is the proportion of patients who experience the primary event. If competing risks and censoring are present and the researcher wants to account for this, the observed probability for a group is the same as the absolute risk (detailed above) |
| ‘Accounting for competing events’ | The use of methods that allow patients to fail from competing events. These patients are retained in the data set but dealt with using assumptions in a way that precludes them from experiencing the event of interest after the competing event, thereby differing from the assumptions for patients censored due to loss to follow-up or other reasons |
| ‘Ignoring competing events’ | Using statistical methods with inappropriate assumptions concerning competing events, most often by assuming no competing risks or that competing risks could be eliminated |
Figure 1Differences between Kaplan–Meier (KM) and cumulative incidence function (CIF) estimates of the observed outcome probabilities in the presence of competing events, in the Swedish Renal Registry (SRR)
Figure 2One minus Kaplan–Meier curves and cumulative incidence curves of the observed outcome probabilities in the Swedish Renal Registry for kidney failure and death. For illustrative purposes, patients who experienced kidney failure were censored or regarded as a competing event in the lower plot.
Calibration and discrimination results for external validation of the 2- and 5-year KFRE, in the entire validation cohort (n = 13 489). The external validation was performed in two manners, first by ignoring the competing risk of death by censoring these patients and using Kaplan–Meier estimates and second by validating the models whilst taking account of competing risks in all performance measures.
| KFRE 2-year model | KFRE 5-year model | |||
|---|---|---|---|---|
| Ignoring competing events by censoring | Taking competing events into account | Ignoring competing events by censoring | Taking competing events into account | |
| Average predicted risk | 17% | 17% | 41% | 41% |
| Average observed probability (95% CI) | 18% (17%–19%) | 16% (15%–17%) | 41% (40%–42%) | 31% (30%–32%) |
| O/E ratio (95% CI) | 1.06 (1.02–1.10) | 0.94 (0.91–0.98) | 1.00 (0.98–1.02) | 0.76 (0.74–0.78) |
| C-index (95% CI) | 0.840 (0.831–0.849) | 0.834 (0.825–0.843) | 0.829 (0.821–0.837) | 0.814 (0.806–0.822) |
| D statistic (95% CI) | 2.34 (2.25–2.42) | 2.32 (2.20–2.43) | 2.13 (2.06–2.19) | 2.04 (1.95–2.14) |
|
| 57% | 56% | 52% | 50% |
KFRE, Kidney Failure Risk Equation; O/E, observed/expected; CI, confidence interval.
Figure 3Calibration plots for external validation of the 2- and 5-year Kidney Failure Risk Equation (KFRE). The external validation was performed by using Kaplan–Meier estimates (ignoring competing risks) and by using a competing-risks approach. The competing-risks approach (green points and line) represents the model performance for the absolute kidney-failure risk in a setting in which patients may die.
Calibration and discrimination results for external validation of the 2- and 5-year KFRE, in a subset of patients aged ≥70 years (n = 8654). The external validation was performed in two manners, first by ignoring the competing risk of death by censoring these patients and using Kaplan–Meier estimates and second by validating the models whilst taking account of competing risks in all performance measures.
| KFRE 2-year model | KFRE 5-year model | |||
|---|---|---|---|---|
| Ignoring competing events by censoring | Taking competing events into account | Ignoring competing events by censoring | Taking competing events into account | |
| Average predicted risk | 13% | 13% | 34% | 34% |
| Average observed probability (95% CI) | 11% (11%–12%) | 10% (9%–10%) | 28% (27%–29%) | 19% (18%–20%) |
| O/E ratio (95% CI) | 0.91 (0.86–0.96) | 0.78 (0.73–0.83) | 0.84 (0.81–0.87) | 0.57 (0.54–0.59) |
| C-index (95% CI) | 0.826 (0.810–0.841) | 0.813 (0.797–0.828) | 0.817 (0.803–0.830) | 0.791 (0.778–0.805) |
| D statistic (95% CI) | 2.23 (2.10–2.36) | 2.04(1.90–2.17) | 2.09 (1.98–2.20) | 1.75 (1.63–1.86) |
|
| 54.3% | 49.8% | 51.1% | 42.1% |
KFRE, Kidney Failure Risk Equation; O/E, observed/expected; CI, confidence interval.
Figure 4Calibration plots for external validation of the 2- and 5-year Kidney Failure Risk Equation (KFRE) in a subset of older patients. The external validation was performed by using Kaplan–Meier estimates (ignoring competing risks) and by using a competing-risks approach. The competing-risks approach (green points and line) represents the model performance for the absolute kidney-failure risk in a setting in which patients may die.