| Literature DB >> 34918493 |
Michał Hutny1, Jagoda Hofman1, Agnieszka Zachurzok2, Paweł Matusik3.
Abstract
INTRODUCTION: Rising child obesity rate creates a need for tools quantifying changes in children suffering from obesity, for purposes of detection or prevention of comorbidities. A candidate for such a role seems to be microRNAs, which in vivo serve as the suppressing factors in gene expression.Entities:
Keywords: children; epigenetics; microRNA; obesity
Mesh:
Substances:
Year: 2021 PMID: 34918493 PMCID: PMC9285424 DOI: 10.1111/ijpo.12880
Source DB: PubMed Journal: Pediatr Obes ISSN: 2047-6302 Impact factor: 3.910
FIGURE 1Flow diagram of research process.
Summary of article characteristics
| Number | Authors | Year | Complication of obesity | Number of subjects | Molecules investigated | Sample source | Evaluation technique |
|---|---|---|---|---|---|---|---|
| 1. | Donghui et al. | 2019 | ED | 67 | miR‐126 | Serum | RT‐qPCR |
| 2. | Zhao et al. | 2021 | ED | 60 | miR‐320a | Serum | RT‐qPCR |
| 3. | Khalyfa et al. | 2016 | ED | 70 | miR‐125a‐5p, ‐342‐3p, ‐365b‐3p | Plasma | RT‐qPCR, Microarrays |
| 4. | Khalyfa et al. | 2016 | ED | 69 | miR‐16‐5p, ‐451a, ‐5100, ‐630, ‐4665‐3p | Serum EVs | RT‐qPCR, Microarrays |
| 5. | Thompson et al. | 2017 | NAFLD | 30 | miR‐15b‐5p, ‐199a‐5p, ‐222‐3p, ‐223‐5p, ‐34a‐5p, ‐122‐5p, ‐23a‐5p, ‐27b‐3p, ‐21‐5p, ‐34a‐5p, ‐451‐5p, ‐192‐5p, ‐16‐5p, ‐29a‐3p, ‐150‐5p, ‐214‐3p, ‐375, ‐155‐5p, ‐191‐5p, ‐103a‐5p | Plasma | RT‐qPCR |
| 6. | Brandt et al. | 2017 | NAFLD | 147 | miR‐122 | Serum/plasma | RT‐qPCR |
| 7. | Cui et al. | 2018 | T2DM | 718 | miR‐486, ‐146b, ‐15b | Serum | RT‐qPCR |
| 8. | Mohany et al. | 2020 | T2DM | 120 | miR‐486, ‐146b, ‐15b | Plasma | RT‐qPCR |
| 9. | Mohany et al. | 2021 | T2DM | 298 | miR‐29a, ‐122 | Serum | RT‐qPCR |
| 10. | Al‐Rawaf | 2020 | MetS | 250 | miR–142‐3p, ‐140‐5p, ‐222, ‐143, ‐130, ‐532‐5p, ‐423‐5p, ‐520c‐3p, ‐146a, ‐15a | Plasma | RT‐qPCR |
| 11. | Zhang et al. | 2021 | MetS | 147 | miR‐24‐3p | Serum | RT‐qPCR |
| 12. | Lischka et al. | 2021 | MetS | 109 | miR‐15a, ‐19, ‐23a, ‐27b, ‐33a, ‐33b, ‐34a, ‐93, ‐98, ‐122, ‐144‐3p, ‐144‐5p, ‐192, ‐193b, ‐197, ‐1290 | Serum | RT‐qPCR |
| 13. | Lin et al. | 2020 | IR | 33 | miR‐30d‐5p, ‐122‐5p, ‐221‐3p, ‐215‐5p | Serum | RT‐qPCR |
| 14. | Yu et al. | 2018 | IR | 90 | miR‐27a | Serum | RT‐qPCR |
| 15. | Iacomino et al. | 2021 | IR | 58 | miR‐191‐3p, ‐375 | Serum | RT‐qPCR |
| 16. | Barberio et al. | 2019 | AS | 93 | miR‐3129‐5p, ‐20b, ‐9‐5p, ‐320d, ‐301a‐5p, ‐155‐5p | Circulating adipocyte‐derived EVs | Microarrays |
Abbreviations: AS, atherosclerosis; ED, endothelial dysfunction; EVs, extracellular vesicles; IR, insulin resistance; MetS, metabolic syndrome; miR, miRNA; NAFLD, non‐alcoholic fatty liver disease; RT‐qPCR, reverse‐transcription quantitative polymerase chain reaction; T2DM, type 2 diabetes mellitus.
Articles concerning the differences of miRNA levels in endothelial dysfunction and physiology
| Article | Group | Number of patients | Age (years) | Sex (% of male) | BMI‐z |
|---|---|---|---|---|---|
| *BMI | |||||
| 1. | CG |
| 12–18 | 100 | Pre *23.05 ± 0.46 |
| Post *23.01 ± 0.50 | |||||
| EG |
| 12–18 | 100 | Pre *33.48 ± 3.54 | |
| Post *29.63 ± 3.16 | |||||
| 2. | DG |
| 12.05 ± 2.28 | 65 | Pre *29.33 ± 1.11 |
| Post *28.63 ± 0.94 | |||||
| EG |
| 12.30 ± 2.61 | 70 | Pre *29.33 ± 1.29 | |
| Post *26.09 ± 1.05 | |||||
| 3. | NEF |
| 7.59 ± 1.26 | 70.4 | 1.69 ± 0.62 |
| ED |
| 8.41 ± 1.20 | 63.8 | 2.00 ± 0.68 | |
| 4. | OBNEF |
| 7.6 ± 2.6 | 56.5 | 1.74 ± 0.28 |
| OBED |
| 7.7 ± 2.8 | 60 | 1.76 ± 0.31 | |
| CG |
| 7.3 ± 2.2 | 58 | 1.08 ± 0.21 |
Abbreviations: BMI, body mass index; BMI‐z, body mass index Z‐score; CG, control group; DG, dietary group; ED, endothelial dysfunction; EG, experimental group; NEF, normal endothelial function; OBED, subjects with obesity and endothelial dysfunction; OBNEF, subjects with obesity and normal endothelial function.
Total number of patients in this study was 67 subjects, but due to various reasons seven subjects were excluded before the intervention, and the next 13 subjects during the intervention phase of experiment.
Summary of results
| Article no. | Comorbidity | Molecule | Compared groups | Status (fold change) | Significance ( | AUC |
|---|---|---|---|---|---|---|
| 1. | ED | miR‐126 | Pre‐CG versus Pre‐EG | −1.73 | <0.01 | ‐ |
| Pre‐EG versus Post‐EG | 0.31 | <0.01 | ‐ | |||
| 2. | ED | miR‐320a | Post‐EG versus Post‐DG | 1.00 | <0.001 | ‐ |
| Post‐EG versus Pre‐EG | 1.00 | <0.001 | ‐ | |||
| 3. | ED | miR‐125a‐5p | ED versus NEF | −1.33 ± 0.11 | 0.02 (0.01) | ‐ |
| miR‐342‐3p | −1.41 ± 0.08 | 0.03 (0.02) | ‐ | |||
| miR‐365b‐3p | 1.41 ± 0.14 | 0.004 (0.001) | ‐ | |||
| 4. | ED | miR‐630 | ED versus NEF | −0.11 | <0.0001 | ‐ |
| 5. | NAFLD | miR‐199a‐5p | NAFLD versus CG | 17.18 | <0.0001 | 0.9750 |
| miR‐122‐5p | 12.48 | <0.0001 | 0.9833 | |||
| 6. | NAFLD | miR‐122 | NAFLD versus NN (GC) | 2.25 | <0.05 | 0.77 |
| NAFLD versus NN (IC) | 0.20 | >0.05 | 0.54 | |||
| 7. | T2DM | miR‐15b | OB versus CG | > 6.00 | <0.01 | ‐ |
| T2DM versus NGT | 6.67 | <0.01 | 0.969 | |||
| miR‐146b | OB versus CG | > 6.00 | <0.01 | ‐ | ||
| T2DM versus NGT | 5.75 | <0.01 | 0.882 | |||
| miR‐486 | OB versus CG | > 6.00 | <0.01 | ‐ | ||
| T2DM versus NGT | 9.00 | <0.01 | 0.923 | |||
| 8. | T2DM | miR‐486R | OB versus CG | 0.39 | 0.003 | ‐ |
| t2DM versus CG | 0.78 | <0.001 | ‐ | |||
| t2DM versus OB | 0.24 | 0.001 | 0.61 | |||
| miR‐146bR | OB versus CG | 0.24 | <0.001 | ‐ | ||
| t2DM versus CG | 0.46 | <0.001 | ‐ | |||
| t2DM versus OB | 0.17 | <0.001 | 0.54 | |||
| miR‐15bR | OB versus CG | 0.13 | <0.001 | ‐ | ||
| t2DM versus CG | 0.34 | <0.001 | ‐ | |||
| t2DM versus OB | 0.18 | <0.001 | 0.62 | |||
| 9. | T2DM | miR‐29a | t2DM versus OB | 0.21 | <0.001 | ‐ |
| miR‐122 | t2DM versus OB | 0.37 | <0.001 | ‐ | ||
| 10. | MetS | miR‐532‐5p | OB versus CG | −4.59 | <0.001 | ‐ |
| miR‐423‐5p | −3.32 | <0.001 | ‐ | |||
| miR‐520c‐3p | −4.41 | <0.001 | ‐ | |||
| miR‐146a | −4.83 | <0.001 | ‐ | |||
| miR‐15a | −3.67 | <0.001 | ‐ | |||
| miR‐142‐3p | 4.06 | <0.001 | ‐ | |||
| miR‐140‐5p | 2.53 | <0.001 | ‐ | |||
| miR‐222 | 2.36 | <0.001 | ‐ | |||
| miR‐143 | 3.02 | <0.001 | ‐ | |||
| miR‐130 | 2.18 | <0.001 | ‐ | |||
| 11. | MetS | miR‐24‐3p | OB versus CG | 0.52 | <0.001 | 0.951 |
| MetS versus OB | 0.43 | <0.001 | 0.890 | |||
| 13. | IR | miR‐30d‐5p | OB‐IR versus OB | 0.90 | <0.05 | ‐ |
| miR‐122‐5p | 1.17 | <0.05 | ‐ | |||
| miR‐221‐3p | 0.22 | <0.05 | ‐ | |||
| miR‐215‐5p | 0.27 | <0.05 | ‐ | |||
| 14. | IR | miR‐27a | OB versus CG | 2.70 | <0.05 | ‐ |
| 16. | AS | miR‐3129‐5p | HCE versus LCE | OE | <0.05 | ‐ |
| miR‐320d | OE | <0.05 | ‐ |
Abbreviations: AUC, area under receiver‐operator curve; CG, control group; ED, endothelial dysfunction; GC, German cohort; HCE, high cholesterol efflux; IC, Italian cohort; IR, insulin resistance; LCE, low cholesterol efflux; MetS, metabolic syndrome; miR, microRNA; NA, not‐applicable; NAFLD, non‐alcoholic fatty liver disease; NEF, normal endothelial function; NGT, adults with normal glucose tolerance; NN, non‐NAFLD; OB, children with obesity; OE, overexpressed; post‐EG, post‐intervention experimental group; pre‐CG, pre‐intervention control group; pre‐EG, pre‐intervention experimental group; T2DM, adults with diabetes; t2DM, children with diabetes; UE, under‐expressed.
Significant AUC result (>0.9).
Cardiovascular arrays.
qRT‐PCR (quantitative reverse transcription polymerase chain reaction) validation.
Lack of data concerning the exact levels of molecules.
p‐values <0.05 were treated as significant.
Relation of miRNAs and obesity/NAFLD indicators in study 5
| Molecule | Parameter |
|
|
|---|---|---|---|
| miR‐223‐3p | BMI | 0.39 | 0.04 |
| miR‐21‐5p | BMI | 0.40 | 0.03 |
| miR‐29a‐3p | BMI | 0.61 | 0.0006 |
| miR‐150‐5p | BMI | 0.53 | 0.003 |
| miR‐103a‐5p | BMI | 0.44 | 0.02 |
| miR‐34a‐5p | AST | 0.45 | 0.047 |
| miR‐122‐5p | AST | 0.50 | 0.02 |
| miR‐122‐5p | ALT | 0.60 | 0.006 |
| miR‐192‐5p | ALT | 0.59 | 0.006 |
Abbreviations: ALT, alanin acylotransferase; AST, aspartate acylotransferase; BMI, body mass index.
AUC scores of miRNA and miRNA combinations in study 7
| Subject | miR‐486‐5p | miR‐146a‐5p | miR‐15b‐5p | miR‐486‐5p/miR‐146a‐5p | miR‐486‐5p/miR‐15b‐5p | miR‐146a‐5p/miR‐15b‐5p |
|---|---|---|---|---|---|---|
| AUC | 0.923 | 0.882 | 0.969 | 0.928 | 0.980 | 0.971 |
Abbreviations: AUC, area under receiver‐operator curve; miR, miRNA.