Literature DB >> 34913592

The genotype-phenotype landscape of an allosteric protein.

Drew S Tack, Peter D Tonner, Abe Pressman, Nathan D Olson, Sasha F Levy, Eugenia F Romantseva, Nina Alperovich, Olga Vasilyeva, David Ross.   

Abstract

Entities:  

Year:  2021        PMID: 34913592      PMCID: PMC8675151          DOI: 10.15252/msb.202110847

Source DB:  PubMed          Journal:  Mol Syst Biol        ISSN: 1744-4292            Impact factor:   11.429


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Correction to: Mol Syst Biol (2021) 17: e10179. DOI: 10.15252/msb.202010179 | Published online 30 March 2021 In this study, the authors stated: “To our knowledge, this is the first identification of single‐protein genetic sensors with band‐stop dose‐response curves”. After the publication of the Tack et al (2021) study and while preparing a related manuscript, they found some early publications describing LacI variants with “band‐stop” dose–response curves. In those earlier papers (from the 1960s and 1970s), what Tack et al (2021) refer to as band‐stop variants were denoted as the “reversed” or “i r” phenotype. While preparing the Tack et al (2021) study, they mistakenly thought that “reversed” was synonymous with “inverted” (a term also used in other recent studies). As such, despite being aware that “reversed” variants had been observed before, they did not realize that they were similar to what they refer to as “band‐stop” variants. The earlier publications describing reversed (i.e., band‐stop) LacI variants include the following: a study of temperature‐sensitive variants (Sadler & Novick, 1965); studies of the LacI X86 mutant, a reversed variant that is not temperature‐sensitive (Chamness & Willson, 1970; Jobe & Bourgeois, 1972); studies of variants that bind to DNA operator more tightly than the wild‐type (Betz & Sadler, 1976; Schmitz et al, 1978); and studies of a large number of mutations, including X86 and other reversed variants (Miller & Schmeissner, 1979; Miller et al, 1979). Besides the sentence quoted above, this mistake does not impact the findings of the study. The authors apologize for this error.
  8 in total

1.  Genetic studies of the lac repressor. X. Analysis of missense mutations in the lacI gene.

Authors:  J H Miller; U Schmeissner
Journal:  J Mol Biol       Date:  1979-06-25       Impact factor: 5.469

2.  THE PROPERTIES OF REPRESSOR AND THE KINETICS OF ITS ACTION.

Authors:  J R SADLER; A NOVICK
Journal:  J Mol Biol       Date:  1965-06       Impact factor: 5.469

3.  Genetic studies of the lac repressor. V. Repressors which bind operator more tightly generated by suppression and reversion of nonsense mutations.

Authors:  A Schmitz; C Coulondre; J H Miller
Journal:  J Mol Biol       Date:  1978-08-15       Impact factor: 5.469

4.  Genetic studies of the lac repressor. IX. Generation of altered proteins by the suppression of nonsence mutations.

Authors:  J H Miller; C Coulondre; M Hofer; U Schmeissner; H Sommer; A Schmitz; P Lu
Journal:  J Mol Biol       Date:  1979-06-25       Impact factor: 5.469

5.  The lac repressor-operator interaction. VII. A repressor with unique binding properties: the X86 repressor.

Authors:  A Jobe; S Bourgeois
Journal:  J Mol Biol       Date:  1972-12-14       Impact factor: 5.469

6.  An unusual lac repressor mutant.

Authors:  G C Chamness; C D Willson
Journal:  J Mol Biol       Date:  1970-11-14       Impact factor: 5.469

7.  Tight-binding repressors of the lactose operon.

Authors:  J L Betz; J R Sadler
Journal:  J Mol Biol       Date:  1976-08-05       Impact factor: 5.469

8.  The genotype-phenotype landscape of an allosteric protein.

Authors:  Drew S Tack; Peter D Tonner; Abe Pressman; Nathan D Olson; Sasha F Levy; Eugenia F Romantseva; Nina Alperovich; Olga Vasilyeva; David Ross
Journal:  Mol Syst Biol       Date:  2021-03       Impact factor: 11.429

  8 in total
  2 in total

1.  Method for reproducible automated bacterial cell culture and measurement.

Authors:  David Ross; Peter D Tonner; Olga B Vasilyeva
Journal:  Synth Biol (Oxf)       Date:  2022-08-10

2.  Interpretable modeling of genotype-phenotype landscapes with state-of-the-art predictive power.

Authors:  Peter D Tonner; Abe Pressman; David Ross
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-21       Impact factor: 12.779

  2 in total

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