Literature DB >> 36101862

Method for reproducible automated bacterial cell culture and measurement.

David Ross1, Peter D Tonner1, Olga B Vasilyeva1.   

Abstract

Microbial cell culture is one of the most commonly performed protocols for synthetic biology, and laboratories are increasingly using 96-well plates and laboratory automation systems for cell culture. Here, we describe a method for reproducible microbial culture using laboratory automation systems, including automated liquid handling, automated plate sealing and de-sealing, automated incubation and measurement of growing cultures. We discuss the key considerations that, in our experience, are important for reproducibility and present statistical analyses of data from 150 automated microbial growth experiments performed over 27 months using our automated method. Published by Oxford University Press 2022. This work is written by (a) US Government employee(s) and is in the public domain in the US.

Entities:  

Keywords:  bacterial culture; laboratory automation

Year:  2022        PMID: 36101862      PMCID: PMC9462466          DOI: 10.1093/synbio/ysac013

Source DB:  PubMed          Journal:  Synth Biol (Oxf)        ISSN: 2397-7000


  16 in total

1.  Characterization of gas-liquid mass transfer phenomena in microtiter plates.

Authors:  Robert Hermann; Mathias Lehmann; Jochen Büchs
Journal:  Biotechnol Bioeng       Date:  2003-01-20       Impact factor: 4.530

Review 2.  Microtiter plates as mini-bioreactors: miniaturization of fermentation methods.

Authors:  Wouter A Duetz
Journal:  Trends Microbiol       Date:  2007-10-24       Impact factor: 17.079

3.  Precise, High-throughput Analysis of Bacterial Growth.

Authors:  Masaomi Kurokawa; Bei-Wen Ying
Journal:  J Vis Exp       Date:  2017-09-19       Impact factor: 1.355

4.  Reproducibility of High-Throughput Plate-Reader Experiments in Synthetic Biology.

Authors:  Michael Chavez; Jonathan Ho; Cheemeng Tan
Journal:  ACS Synth Biol       Date:  2016-11-09       Impact factor: 5.110

5.  High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived 13C constraints.

Authors:  Eliane Fischer; Nicola Zamboni; Uwe Sauer
Journal:  Anal Biochem       Date:  2004-02-15       Impact factor: 3.365

6.  FlowCal: A User-Friendly, Open Source Software Tool for Automatically Converting Flow Cytometry Data from Arbitrary to Calibrated Units.

Authors:  Sebastian M Castillo-Hair; John T Sexton; Brian P Landry; Evan J Olson; Oleg A Igoshin; Jeffrey J Tabor
Journal:  ACS Synth Biol       Date:  2016-05-12       Impact factor: 5.110

7.  A minimum information standard for reproducing bench-scale bacterial cell growth and productivity.

Authors:  Ariel Hecht; James Filliben; Sarah A Munro; Marc Salit
Journal:  Commun Biol       Date:  2018-12-06

8.  Sparse estimation of mutual information landscapes quantifies information transmission through cellular biochemical reaction networks.

Authors:  Swarnavo Sarkar; Drew Tack; David Ross
Journal:  Commun Biol       Date:  2020-04-30

9.  A new analysis method for evaluating bacterial growth with microplate readers.

Authors:  Venkata Rao Krishnamurthi; Isabelle I Niyonshuti; Jingyi Chen; Yong Wang
Journal:  PLoS One       Date:  2021-01-12       Impact factor: 3.240

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