| Literature DB >> 34911543 |
Jingyu Xu1,2, Junze Geng1,2, Qiang Zhang3, Yihua Fan4, Zijun Qi4, Tian Xia5,6.
Abstract
OBJECTIVE: Regulation of single nucleotide polymorphisms (SNP) in micro-RNA (miRNA) on the host cells may be one of the most important factors influencing the occurrence of cervical cancer based on the prevalence of HPV infection and the development of cervical cancer. In order to explore the contribution of miRNA polymorphism to the occurrence and development of cervical cancer, we conducted an analytical study.Entities:
Keywords: Cervical cancer; Meta-analysis; Micro-RNA; Single nucleotide polymorphism
Mesh:
Substances:
Year: 2021 PMID: 34911543 PMCID: PMC8675500 DOI: 10.1186/s12957-021-02463-4
Source DB: PubMed Journal: World J Surg Oncol ISSN: 1477-7819 Impact factor: 2.754
Basic information of three miRNA polymorphisms
| Gene name | dpSNP rs#ID | Location | Chromosome | Alleles | Ancestral allele | Functional consequence |
|---|---|---|---|---|---|---|
| miRNA-146a | rs2910164 | Pre-miRNA | 5:160485411 | G/C | G | NCTV* |
| miRNA-499 | rs3746444 | Pre-miRNA | 20:34990448 | T/C | T | NCTV* |
| miRNA-196a2 | rs11614913 | Pre-miRNA | 12:53991815 | C/T | C | NCTV* |
Note: NCTV non_coding_transcript_variant
Fig. 1Flow diagram of study selection for this meta-analysis
Characteristics of the studies eligible for meta-analysis
| Frist author | Year | Country | Source of control | Genotyping method | Case/control | Case | Control | HWE* | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MiRNA-146a rs2910164 | CC | CG | GG | C | G | CC | CG | GG | C | G | ||||||
| Bin Zhou | 2011 | China | HB* | PCR-RFLP* | 226/309 | 70 | 113 | 43 | 253 | 199 | 116 | 159 | 34 | 391 | 227 | 0.060 |
| Cong Yue | 2011 | China | HB* | PCR-RFLP* | 447/443 | 105 | 224 | 118 | 434 | 460 | 150 | 206 | 87 | 506 | 380 | 0.285 |
| Li Ma | 2015 | China | HB* | PCR-RFLP* | 205/415 | 53 | 102 | 50 | 208 | 202 | 103 | 219 | 93 | 425 | 405 | 0.254 |
| ShiZhi Wang | 2019 | China | HB* | TaqMan | 954/1339 | 318 | 475 | 141 | 1111 | 757 | 471 | 631 | 212 | 1573 | 1055 | 0.978 |
| Nisha Thakur | 2019 | India | HB* | PCR-RFLP* | 150/150 | 21 | 49 | 80 | 91 | 209 | 28 | 49 | 73 | 105 | 195 | 0.056 |
| MiRNA-499 rs3746444 | TT | CT | CC | T | C | TT | CT | CC | T | C | ||||||
| Bin Zhou | 2011 | China | HB* | PCR-RFLP* | 226/309 | 134 | 84 | 8 | 352 | 100 | 223 | 71 | 15 | 517 | 101 | 0.051 |
| ShiZhi Wang | 2019 | China | HB* | TaqMan | 954/1339 | 675 | 228 | 27 | 1578 | 282 | 946 | 339 | 35 | 2231 | 409 | 0.485 |
| Nisha Thakur | 2019 | India | HB* | PCR-RFLP* | 150/150 | 25 | 47 | 78 | 97 | 203 | 21 | 49 | 80 | 91 | 209 | 0.063 |
| MiRNA-196a2 rs11614913 | TT | CT | CC | T | C | TT | CT | CC | T | C | ||||||
| Bin Zhou | 2011 | China | HB* | PCR-RFLP* | 226/309 | 57 | 123 | 46 | 237 | 215 | 82 | 169 | 58 | 333 | 285 | 0.077 |
| Bo Ding | 2016 | China | HB* | TaqMan* | 509/562 | 133 | 265 | 111 | 531 | 487 | 181 | 278 | 103 | 640 | 484 | 0.836 |
| ChunTao Wang | 2016 | China | HB* | PCR-LDR* | 104/186 | 31 | 52 | 21 | 114 | 94 | 65 | 82 | 39 | 212 | 160 | 0.170 |
| ZhiLing Yan | 2019 | China | HB* | TaqMan | 547/567 | 117 | 277 | 153 | 511 | 583 | 153 | 282 | 132 | 588 | 546 | 0.926 |
| ShiZhi Wang | 2019 | China | HB* | TaqMan | 954/1339 | 271 | 464 | 194 | 1006 | 852 | 424 | 629 | 269 | 1477 | 1167 | 0.201 |
| Nisha Thakur | 2019 | India | HB* | PCR-RFLP* | 150/150 | 17 | 58 | 75 | 92 | 208 | 57 | 51 | 42 | 165 | 135 | 0.089 |
Note: HWE Hardy-Weinberg equilibrium, HB hospital-based, PCR-RFLP restriction fragment length polymorphism polymerase chain reaction, PCR-LDR polymerase chain reaction-ligase detection reaction
Newcastle-Ottawa Scale for quality assessment
| Author (year) | Selection | Comparability | Exposure | Total score | |||||
|---|---|---|---|---|---|---|---|---|---|
| Case definition | Case representation | Selection of controls | Definition of contrast | Control for factor | Determination of exposure | Same exposure method | No response rates | ||
| Zhou (2011) [ | ☆ | ☆ | ☆ | ☆☆ | ☆ | ☆ | ☆ | 8 | |
| Yue (2011) [ | ☆ | ☆ | ☆ | ☆☆ | ☆ | ☆ | ☆ | 8 | |
| Ma (2015) [ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 7 | |
| Ding (2016) [ | ☆ | ☆ | ☆ | ☆ | ☆☆ | ☆ | ☆ | ☆ | 9 |
| Wang (2016) [ | ☆ | ☆ | ☆ | ☆☆ | ☆ | ☆ | ☆ | 8 | |
| Yan (2019) [ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 7 | |
| Wang (2019) [ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 7 | |
| Thakur (2019) [ | ☆ | ☆ | ☆ | ☆ | ☆☆ | ☆ | ☆ | ☆ | 9 |
☆The article scored one point in the project
☆☆The article scored two points in the project
Total OR and 95% CI of three MiRNA polymorphisms in relation to cervical cancer susceptibility
| Polymorphism | Genetic model | Association text | Heterogeneity text | |||||
|---|---|---|---|---|---|---|---|---|
| OR [95% CI] | ||||||||
| MiRNA-146a rs2910164 | 5 | CC vs. GG | 0.713 [0.505-1.006] | 1.93 | 0.054 | 12.84 | 68.8 | 0.012 |
| CG vs. GG | 0.920 [0.790-1.080] | 1.03 | 0.304 | 7.08 | 43.5 | 0.132 | ||
| CG+CC vs. GG | 0.807 [0.627-1.038] | 1.67 | 0.095 | 9.84 | 59.4 | 0.043 | ||
| CC vs. GG+CG | 2.04 | 0.042 | 8.2 | 51.2 | 0.085 | |||
| CC+GG vs. CG | 0.939 [0.834-1.056] | 1.05 | 0.293 | 2.42 | 0 | 0.659 | ||
| C vs. G | 2.07 | 0.038 | 11.46 | 65.1 | 0.022 | |||
| MiRNA-499 rs3746444 | 3 | CC vs. TT | 0.958 [0.663-1.383] | 0.23 | 0.818 | 0.46 | 0 | 0.794 |
| CT vs. TT | 1.173 [0.678-2.032] | 0.57 | 0.568 | 12.04 | 83.4 | 0.002 | ||
| CT+CC vs. TT | 1.140 [0.719-1.809] | 0.56 | 0.577 | 9.65 | 79.3 | 0.008 | ||
| CC vs. CT+TT | 0.966 [0.705-1.324] | 0.22 | 0.829 | 0.68 | 0 | 0.71 | ||
| TT+CC vs. CT | 0.833 [0.511-1.358] | 0.73 | 0.464 | 12.2 | 83.6 | 0.002 | ||
| C vs. T | 1.079 [0.832-1.401] | 0.57 | 0.566 | 5.71 | 65 | 0.058 | ||
| MiRNA-196a2 rs11614913 | 6 | TT vs.CC | 2.42 | 0.016 | 22.99 | 78.2 | < 0.001 | |
| CT vs. CC | 0.922 [0.804-1.056] | 1.17 | 0.24 | 3.68 | 0 | 0.597 | ||
| CT+TT vs. CC | 2.01 | 0.045 | 12.71 | 60.7 | 0.026 | |||
| TT vs. CT+CC | 2.58 | 0.01 | 20.93 | 76.1 | 0.001 | |||
| TT+CC vs. CT | 0.917 [0.824-1.020] | 1.6 | 0.11 | 1.12 | 0 | 0.952 | ||
| T vs. C | 2.43 | 0.015 | 28.59 | 82.5 | < 0.001 | |||
Fig. 2Forest plot for the association between miRNA-146a rs2910164 polymorphism and cervical cancer susceptibility for CC vs. GG (A), CG vs. GG (B), CG+CC vs. GG (C), CC vs. CG+GG (D), CC+GG vs. CG (E), and C vs. G (F)
A subgroup analysis of the relationship between three MiRNA polymorphisms and susceptibility to cervical cancer
| Variable | No. | CC vs. GG | CG vs. GG | CG+CC vs. GG | CC vs. GG+CG | CC+GG vs. CG | C vs. G | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MiRNA-146a rs2910164 | OR [95% CI] | OR [95% CI] | OR [95% CI] | OR [95% CI] | OR [95% CI] | OR [95% CI] | |||||||
| PCR-RFLP* | 4 | 0.986 [0.835-1.164] | 0.866 | ||||||||||
| TaqMan | 1 | 1.015 [0.786-1.311] | 0.908 | 1.132 [0.887-1.445] | 0.320 | 1.082 [0.858-1.364] | 0.505 | 0.924 [0.775-1.102] | 0.379 | 0.893 [0.755-1.056] | 0.185 | 0.984 [0.872-1.111] | 0.798 |
| China | 4 | 0.715 [0.477-1.072] | 0.105 | 0.921 [0.779-1.089] | 0.334 | 0.796 [0.584-1.048] | 0.148 | 0.813 [0.641-1.031] | 0.088 | 0.935 [0.828-1.056] | 0.278 | 0.849 [0.706-1.021] | 0.083 |
| India | 1 | 0.684 [0.358-1.309] | 0.252 | 0.913 [0.549-1.516] | 0.724 | 0.830 [0.527-1.305] | 0.419 | 0.709 [0.382-1.315] | 0.276 | 1.000 [0.617-1.620] | 1.000 | 0.809 [0.574-1.138] | 0.223 |
| MiRNA-499 rs3746444 | CC vs. TT | CT vs. TT | CT+CC vs. TT | CC vs. CT+TT | TT+CC vs. CT | C vs. T | |||||||
| PCR-RFLP* | 2 | 0.843 [0.497-1.430] | 0.527 | 1.326 [0.555-3.164] | 0.525 | 1.258 [0.587-2.696] | 0.555 | 0.893 [0.598-1.333] | 0.579 | 0.721 [0.347-1.496] | 0.379 | 1.159 [0.733-1.832] | 0.528 |
| TaqMan | 1 | 1.081 [0.648-1.803] | 0.765 | 0.943 [0.776-1.145] | 0.552 | 0.956 [0.792-1.152] | 0.634 | 1.098 [0.660-1.827] | 0.720 | 1.064 [0.877-1.292] | 0.531 | 0.975 [0.827-1.149] | 0.762 |
| China | 2 | 1.028 [0.661-1.600] | 0.902 | 1.337 [0.650-2.748] | 0.430 | 1.278 [0.695-2.349] | 0.429 | 0.983 [0.634-1.524] | 0.939 | 0.746 [0.359-1.549] | 0.432 | 1.165 [0.789-1.720] | 0.443 |
| India | 1 | 0.819 [0.424-1.582] | 0.552 | 0.806 [0.398-1.630] | 0.548 | 0.814 [0.433-1.529] | 0.522 | 0.948 [0.602-1.492] | 0.817 | 1.063 [0.654-1.727] | 0.805 | 0.911 [0.645-1.287] | 0.597 |
| MiRNA-196a2 rs11614913 | TT vs. CC | CT vs. CC | CT+TT vs. CC | TT vs. CT+CC | TT+CC vs. CT | T vs. C | |||||||
| PCR-RFLP* | 2 | 0.388 [0.076-1.970] | 0.253 | 0.788 [0.559-1.110] | 0.173 | 0.597 [0.261-1.365] | 0.221 | 0.449 [0.103-1.956] | 0.286 | 0.939 [0.711-1.239] | 0.655 | 0.589 [0.230-1.505] | 0.268 |
| TaqMan | 3 | 0.937 [0.804-1.092] | 0.404 | 0.872 [0.755-1.008] | 0.064 | 0.921 [0.818-1.037] | 0.176 | ||||||
| PCR-LDR* | 1 | 0.886 [0.448-1.751] | 0.727 | 1.178 [0.625-2.220] | 0.613 | 1.049 [0.578-1.901] | 0.876 | 0.791 [0.471-1.326] | 0.373 | 0.788 [0.487-1.276] | 0.333 | 0.915 [0.650-1.288] | 0.612 |
| China | 5 | 0.003 | 0.946 [0.822-1.089] | 0.439 | 0.884 [0.773-1.010] | 0.069 | 0.001 | 0.922 [0.827-1.029] | 0.148 | 0.002 | |||
| India | 1 | <0.001 | 0.637 [0.374-1.085] | 0.097 | <0.001 | <0.001 | 0.817 [0.510-1.309] | 0.401 | <0.001 | ||||
Note: PCR-RFLP restriction fragment length polymorphism polymerase chain reaction, PCR-LDR polymerase chain reaction-ligase detection reaction
Fig. 3Forest plot for the association between miRNA-196a2 rs11614913 polymorphism and cervical cancer susceptibility for TT vs. CC (A), CT vs. CC (B), CT+TT vs. CC (C), TT vs. CT+CC (D), CC+TT vs. CT (E), and T vs. C (F)