| Literature DB >> 34903258 |
Njabulo Mnyandu1, Shonisani Wendy Limani1, Patrick Arbuthnot1, Mohube Betty Maepa2.
Abstract
Despite the five decades having passed since discovery of the hepatitis B virus (HBV), together with development of an effective anti-HBV vaccine, infection with the virus remains a serious public health problem and results in nearly 900,000 annual deaths worldwide. Current therapies do not eliminate the virus and viral replication typically reactivates after treatment withdrawal. Hence, current endeavours are aimed at developing novel therapies to achieve a functional cure. Nucleic acid-based therapeutic approaches are promising, with several candidates showing excellent potencies in preclinical and early stages of clinical development. However, this class of therapeutics is yet to become part of standard anti-HBV treatment regimens. Obstacles delaying development of gene-based therapies include lack of clinically relevant delivery methods and a paucity of good animal models for preclinical characterisation. Recent studies have demonstrated safety and efficiency of Adeno-associated viral vectors (AAVs) in gene therapy. However, AAVs do have flaws and this has prompted research aimed at improving design of novel and artificially synthesised AAVs. Main goals are to improve liver transduction efficiencies and avoiding immune clearance. Application of AAVs to model HBV replication in vivo is also useful for characterising anti-HBV gene therapeutics. This review summarises recent advances in AAV engineering and their contributions to progress with anti-HBV gene therapy development.Entities:
Keywords: AAV; Capsid engineering; Genome engineering; HBV replication models; Hepatitis B virus
Mesh:
Substances:
Year: 2021 PMID: 34903258 PMCID: PMC8670254 DOI: 10.1186/s12985-021-01715-9
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Fig. 1AAV genome modifications. A A native single stranded AAV (ssAAV) genome, about 4.7 kb in size, customised for hepatic-specific transgene expression with use of liver-specific promoters such as mouse Transthyretin (TTR) or human TTR promoters. The cis-regulatory modules (CRM) to enhance expression and polyadenylation signal (pA) are also indicated. B Oversized AAV vector genome (bigger than 4.7.kb). C Dual overlapping AAV genomes with 5′ and 3′ transgene splits are indicated by yellow or grey boxes respectively. Pink boxes and a cross indicate homologous regions (HR) and a homologous recombination site respectively. D Dual trans-splicing AAV genomes. Splicing donor (SD) and splicing acceptor (SA) sequence indicated downstream or upstream of the transgene splits. The cross indicate the site for concatemerisation. E Dual hybrid AAV genomes. Highly homologous recombineering (HHR) region is indicated by pink boxes. F Two component vectors, each expressing Cas 9 or sgRNA. G A self-complementary AAV (scAAV) genome with half the size (about 2.35 kbp)
Fig. 2Rational strategies of AAV capsid modification. Monoclonal antibody docking sites, capsid antigenic motifs (CAM) and lysine residues associated with ubiquitination, neddylation, SUMOylation or glycosylation in the capsid are mutated by site directed mutagenesis. Mutated capsid sequences are cloned in to a Rep-encoding plasmid to create a plasmid library that is then used to package a reporter encoding AAV genome. The AAV library is then put through several rounds of selection in vivo or in cell culture to enrich for AAV variants with desirable traits such as hepatocyte transduction and immune evasion. Chemical modification with compounds with hepatocyte affinity e.g. GalNAc, are attached to the AAV capsid to generate AAVs with enhanced hepatocyte transduction. Barcoded rational AAV vector evolution (BRAVE) involves bioinformatics identification of proteins with hepatocyte affinity. A DNA library encoding peptide fragments is generated and inserted in the specific positions of the capsid sequence within the Rep-encoding plasmid to produce a mutant capsid plasmid library. This is followed by packaging of the reporter encoding AAV genome bearing a unique nucleotide barcode sequence. Cre-recombination-based AAV targeted evolution (CREATE) involves insertion of random PCR generated fragments between specific capsid gene positions within the Rep-encoding plasmid to produce mutant capsid plasmid library. A reporter-encoding AAV genome with the poly A signal flanked by lox P sites is then packaged. The AAV library is selected in hepatocytes specific Cre expressing mice
Fig. 3Directed evolution strategies of AAV capsid modification. DNA shuffling of various serotypes’ cap sequences is achieved by fragmenting the capsid sequences and assembly to create hybrid capsid sequences, which can be cloned in the a Rep-encoding plasmid to create an AAV capsid plasmid library. The plasmid is then used to package a reporter-expressing AAV genome followed by selection in vitro or in vivo. Capsid sequence random mutagenesis can be performed to create a mutant capsid library, which is cloned in to a Rep-encoding plasmid to create an AAV library that can be selected. Ancestral capsid sequences, predicted using bioinformatic tools, can be synthesized in vitro and used to produce an ancestral capsid plasmid library and an AAV library before selection
Animal models of HBV chronic infection
| Cell culture/animal model | Immune response | HBV antigen expression | Infection/replication | cccDNA formation | Fibrosis | Liver injury | References |
|---|---|---|---|---|---|---|---|
| Chimpanzee | Immuno-competent | Yes | Infection | Yes | Yes | Yes | [ |
| Woodchuck | Immuno-competent | Yes | Infection | Yes | Yes | Yes | [ |
| Duck HBV | Immuno-competent | Yes | Infection | Yes | Yes | Yes | [ |
| Human liver Chimeric mouse model | Immuno-deficient | Yes | Infection | Yes | Yes | Yes | [ |
| HBV Transgenic mouse model | Immuno-competent | Yes | Replication | No | No | No | [ |
| AAV-HBV mouse model | Immuno- competent | Yes | Replication | No | Yes | Yes | [ |
| hNTCP expressing Rhesus macaques | Immuno-competent | Yes | Infection | Yes | – | Yes | [ |
Key: – not known