Literature DB >> 34902126

Unsupervised Algorithms for Microarray Sample Stratification.

Michele Fratello1,2,3, Luca Cattelani1,2,3, Antonio Federico1,2,3, Alisa Pavel1,2,3, Giovanni Scala4, Angela Serra1,2,3, Dario Greco5,6,7,8.   

Abstract

The amount of data made available by microarrays gives researchers the opportunity to delve into the complexity of biological systems. However, the noisy and extremely high-dimensional nature of this kind of data poses significant challenges. Microarrays allow for the parallel measurement of thousands of molecular objects spanning different layers of interactions. In order to be able to discover hidden patterns, the most disparate analytical techniques have been proposed. Here, we describe the basic methodologies to approach the analysis of microarray datasets that focus on the task of (sub)group discovery.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Clustering; Dimensionality reduction; Group discovery; Microarray; Unsupervised learning

Mesh:

Year:  2022        PMID: 34902126     DOI: 10.1007/978-1-0716-1839-4_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  57 in total

1.  Principal component analysis for clustering gene expression data.

Authors:  K Y Yeung; W L Ruzzo
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

2.  Interactive exploration of microarray gene expression patterns in a reduced dimensional space.

Authors:  Jatin Misra; William Schmitt; Daehee Hwang; Li-Li Hsiao; Steve Gullans; George Stephanopoulos; Gregory Stephanopoulos
Journal:  Genome Res       Date:  2002-07       Impact factor: 9.043

3.  Prediction of pesticide acute toxicity using two-dimensional chemical descriptors and target species classification.

Authors:  T M Martin; C R Lilavois; M G Barron
Journal:  SAR QSAR Environ Res       Date:  2017-07-13       Impact factor: 3.000

Review 4.  Mendelian disorders and multifactorial traits: the big divide or one for all?

Authors:  Stylianos E Antonarakis; Aravinda Chakravarti; Jonathan C Cohen; John Hardy
Journal:  Nat Rev Genet       Date:  2010-05       Impact factor: 53.242

5.  Similarity network fusion for aggregating data types on a genomic scale.

Authors:  Bo Wang; Aziz M Mezlini; Feyyaz Demir; Marc Fiume; Zhuowen Tu; Michael Brudno; Benjamin Haibe-Kains; Anna Goldenberg
Journal:  Nat Methods       Date:  2014-01-26       Impact factor: 28.547

6.  A 6-gene signature identifies four molecular subgroups of neuroblastoma.

Authors:  Frida Abel; Daniel Dalevi; Maria Nethander; Rebecka Jörnsten; Katleen De Preter; Joëlle Vermeulen; Raymond Stallings; Per Kogner; John Maris; Staffan Nilsson
Journal:  Cancer Cell Int       Date:  2011-04-14       Impact factor: 5.722

7.  Stability-based comparison of class discovery methods for DNA copy number profiles.

Authors:  Isabel Brito; Philippe Hupé; Pierre Neuvial; Emmanuel Barillot
Journal:  PLoS One       Date:  2013-12-05       Impact factor: 3.240

8.  On the selection of appropriate distances for gene expression data clustering.

Authors:  Pablo A Jaskowiak; Ricardo J G B Campello; Ivan G Costa
Journal:  BMC Bioinformatics       Date:  2014-01-24       Impact factor: 3.169

9.  Multi-view singular value decomposition for disease subtyping and genetic associations.

Authors:  Jiangwen Sun; Jinbo Bi; Henry R Kranzler
Journal:  BMC Genet       Date:  2014-06-17       Impact factor: 2.797

10.  A Comparison Study on Similarity and Dissimilarity Measures in Clustering Continuous Data.

Authors:  Ali Seyed Shirkhorshidi; Saeed Aghabozorgi; Teh Ying Wah
Journal:  PLoS One       Date:  2015-12-11       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.