Literature DB >> 34898209

DNA-Scaffolded Synergistic Catalysis.

Edward B Pimentel1, Trenton M Peters-Clarke1, Joshua J Coon1,2,3,4, Jeffrey D Martell1,5.   

Abstract

We report DNA-scaffolded synergistic catalysis, a concept that combines the diverse reaction scope of synergistic catalysis with the ability of DNA to precisely preorganize abiotic groups and undergo stimuli-triggered conformational changes. As an initial demonstration of this concept, we focus on Cu-TEMPO-catalyzed aerobic alcohol oxidation, using DNA as a scaffold to hold a copper cocatalyst and an organic radical cocatalyst (TEMPO) in proximity. The DNA-scaffolded catalyst maintained a high turnover number upon dilution and exhibited 190-fold improvement in catalyst turnover number relative to the unscaffolded cocatalysts. By incorporating the cocatalysts into a DNA hairpin-containing scaffold, we demonstrate that the rate of the synergistic catalytic reaction can be controlled through a reversible DNA conformational change that alters the distance between the cocatalysts. This work demonstrates the compatibility of synergistic catalytic reactions with DNA scaffolding, opening future avenues in reaction discovery, sensing, responsive materials, and chemical biology.

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Year:  2021        PMID: 34898209      PMCID: PMC9101022          DOI: 10.1021/jacs.1c10757

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   16.383


  76 in total

1.  DNA-templated organic synthesis and selection of a library of macrocycles.

Authors:  Zev J Gartner; Brian N Tse; Rozalina Grubina; Jeffrey B Doyon; Thomas M Snyder; David R Liu
Journal:  Science       Date:  2004-08-19       Impact factor: 47.728

Review 2.  DNA-templated organic synthesis: nature's strategy for controlling chemical reactivity applied to synthetic molecules.

Authors:  Xiaoyu Li; David R Liu
Journal:  Angew Chem Int Ed Engl       Date:  2004-09-20       Impact factor: 15.336

3.  Effects of template sequence and secondary structure on DNA-templated reactivity.

Authors:  Thomas M Snyder; Brian N Tse; David R Liu
Journal:  J Am Chem Soc       Date:  2008-01-08       Impact factor: 15.419

4.  Target-catalyzed transfer reactions for the amplified detection of RNA.

Authors:  Tom N Grossmann; Lars Röglin; Oliver Seitz
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

5.  "Printing" DNA Strand Patterns on Small Molecules with Control of Valency, Directionality, and Sequence.

Authors:  Tuan Trinh; Daniel Saliba; Chenyi Liao; Donatien de Rochambeau; Alexander Lee Prinzen; Jianing Li; Hanadi F Sleiman
Journal:  Angew Chem Int Ed Engl       Date:  2018-10-30       Impact factor: 15.336

6.  Molecular Engineering of Trifunctional Supported Catalysts for the Aerobic Oxidation of Alcohols.

Authors:  Antony E Fernandes; Olivier Riant; Klavs F Jensen; Alain M Jonas
Journal:  Angew Chem Int Ed Engl       Date:  2016-07-19       Impact factor: 15.336

7.  Mass-Spectrometric Monitoring of a PNA-Based Ligation Reaction for the Multiplex Detection of DNA Single-Nucleotide Polymorphisms.

Authors:  Amos Mattes; Oliver Seitz
Journal:  Angew Chem Int Ed Engl       Date:  2001-09-03       Impact factor: 15.336

8.  Regulating Transition-Metal Catalysis through Interference by Short RNAs.

Authors:  Sydnee A Green; Hayden R Montgomery; Tyler R Benton; Neil J Chan; Hosea M Nelson
Journal:  Angew Chem Int Ed Engl       Date:  2019-08-21       Impact factor: 15.336

9.  Turn On of a Ruthenium(II) Photocatalyst by DNA-Templated Ligation.

Authors:  Marcello Anzola; Nicolas Winssinger
Journal:  Chemistry       Date:  2018-11-19       Impact factor: 5.236

10.  Ribonucleic Acid Sequence Characterization by Negative Electron Transfer Dissociation Mass Spectrometry.

Authors:  Trenton M Peters-Clarke; Qiuwen Quan; Dain R Brademan; Alexander S Hebert; Michael S Westphall; Joshua J Coon
Journal:  Anal Chem       Date:  2020-03-05       Impact factor: 6.986

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