Literature DB >> 34872889

Multicellular modules as clinical diagnostic and therapeutic targets.

Marc-A Baertsch1, Garry P Nolan2, John W Hickey3.   

Abstract

The complex determinants of health and disease can be determined when approached as a system of interactions of biological agents at different scales. Similar to the physicochemical properties that govern nucleic acids and proteins, there should be a finite set of rules that dictate the behavior of cells to form tissues. Thus, the occurrence of disease can be seen as flaws in processes that are governed by rules pertaining to multicellular structures. Multiplexed imaging is a technology that connects information that bridges multiple biological scales (i.e., molecules, cells, and tissues) and enables elucidation of rules associated with the formation of multicellular structures. Uncovering important multicellular structures associated with disease will propel a wave of development of new categories of diagnostics and therapeutics.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  cancer immunotherapy; diagnostics; multicellular structures; multiplexed tissue imaging; spatial biology; therapeutics

Mesh:

Substances:

Year:  2021        PMID: 34872889      PMCID: PMC8854341          DOI: 10.1016/j.trecan.2021.11.004

Source DB:  PubMed          Journal:  Trends Cancer        ISSN: 2405-8025


  23 in total

1.  High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue.

Authors:  Yang Liu; Mingyu Yang; Yanxiang Deng; Graham Su; Archibald Enninful; Cindy C Guo; Toma Tebaldi; Di Zhang; Dongjoo Kim; Zhiliang Bai; Eileen Norris; Alisia Pan; Jiatong Li; Yang Xiao; Stephanie Halene; Rong Fan
Journal:  Cell       Date:  2020-11-13       Impact factor: 41.582

Review 2.  Human Anti-tumor Immunity: Insights from Immunotherapy Clinical Trials.

Authors:  Jackson G Egen; Wenjun Ouyang; Lawren C Wu
Journal:  Immunity       Date:  2020-01-14       Impact factor: 31.745

Review 3.  CODEX multiplexed tissue imaging with DNA-conjugated antibodies.

Authors:  Sarah Black; Darci Phillips; John W Hickey; Julia Kennedy-Darling; Vishal G Venkataraaman; Nikolay Samusik; Yury Goltsev; Christian M Schürch; Garry P Nolan
Journal:  Nat Protoc       Date:  2021-07-02       Impact factor: 13.491

4.  Analysis of multispectral imaging with the AstroPath platform informs efficacy of PD-1 blockade.

Authors:  Sneha Berry; Nicolas A Giraldo; Benjamin F Green; Alexander S Szalay; Janis M Taube; Tricia R Cottrell; Julie E Stein; Elizabeth L Engle; Haiying Xu; Aleksandra Ogurtsova; Charles Roberts; Daphne Wang; Peter Nguyen; Qingfeng Zhu; Sigfredo Soto-Diaz; Jose Loyola; Inbal B Sander; Pok Fai Wong; Shlomit Jessel; Joshua Doyle; Danielle Signer; Richard Wilton; Jeffrey S Roskes; Margaret Eminizer; Seyoun Park; Joel C Sunshine; Elizabeth M Jaffee; Alexander Baras; Angelo M De Marzo; Suzanne L Topalian; Harriet Kluger; Leslie Cope; Evan J Lipson; Ludmila Danilova; Robert A Anders; David L Rimm; Drew M Pardoll
Journal:  Science       Date:  2021-06-11       Impact factor: 47.728

Review 5.  Human organoids: model systems for human biology and medicine.

Authors:  Jihoon Kim; Bon-Kyoung Koo; Juergen A Knoblich
Journal:  Nat Rev Mol Cell Biol       Date:  2020-07-07       Impact factor: 94.444

6.  Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma.

Authors:  Darci Phillips; Magdalena Matusiak; Belén Rivero Gutierrez; Salil S Bhate; Graham L Barlow; Sizun Jiang; Janos Demeter; Kimberly S Smythe; Robert H Pierce; Steven P Fling; Nirasha Ramchurren; Martin A Cheever; Yury Goltsev; Robert B West; Michael S Khodadoust; Youn H Kim; Christian M Schürch; Garry P Nolan
Journal:  Nat Commun       Date:  2021-11-18       Impact factor: 14.919

7.  Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning.

Authors:  Noah F Greenwald; Geneva Miller; Erick Moen; Alex Kong; Adam Kagel; Thomas Dougherty; Christine Camacho Fullaway; Brianna J McIntosh; Ke Xuan Leow; Morgan Sarah Schwartz; Cole Pavelchek; Sunny Cui; Isabella Camplisson; Omer Bar-Tal; Jaiveer Singh; Mara Fong; Gautam Chaudhry; Zion Abraham; Jackson Moseley; Shiri Warshawsky; Erin Soon; Shirley Greenbaum; Tyler Risom; Travis Hollmann; Sean C Bendall; Leeat Keren; William Graf; Michael Angelo; David Van Valen
Journal:  Nat Biotechnol       Date:  2021-11-18       Impact factor: 68.164

Review 8.  The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution.

Authors:  Orit Rozenblatt-Rosen; Aviv Regev; Philipp Oberdoerffer; Tal Nawy; Anna Hupalowska; Jennifer E Rood; Orr Ashenberg; Ethan Cerami; Robert J Coffey; Emek Demir; Li Ding; Edward D Esplin; James M Ford; Jeremy Goecks; Sharmistha Ghosh; Joe W Gray; Justin Guinney; Sean E Hanlon; Shannon K Hughes; E Shelley Hwang; Christine A Iacobuzio-Donahue; Judit Jané-Valbuena; Bruce E Johnson; Ken S Lau; Tracy Lively; Sarah A Mazzilli; Dana Pe'er; Sandro Santagata; Alex K Shalek; Denis Schapiro; Michael P Snyder; Peter K Sorger; Avrum E Spira; Sudhir Srivastava; Kai Tan; Robert B West; Elizabeth H Williams
Journal:  Cell       Date:  2020-04-16       Impact factor: 66.850

9.  Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging.

Authors:  Yury Goltsev; Nikolay Samusik; Julia Kennedy-Darling; Salil Bhate; Matthew Hale; Gustavo Vazquez; Sarah Black; Garry P Nolan
Journal:  Cell       Date:  2018-08-02       Impact factor: 41.582

10.  Subcellular localization of biomolecules and drug distribution by high-definition ion beam imaging.

Authors:  Xavier Rovira-Clavé; Sizun Jiang; Yunhao Bai; Bokai Zhu; Graham Barlow; Salil Bhate; Ahmet F Coskun; Guojun Han; Chin-Min Kimmy Ho; Chuck Hitzman; Shih-Yu Chen; Felice-Alessio Bava; Garry P Nolan
Journal:  Nat Commun       Date:  2021-07-30       Impact factor: 14.919

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  2 in total

Review 1.  Multiplexed In Situ Spatial Protein Profiling in the Pursuit of Precision Immuno-Oncology for Patients with Breast Cancer.

Authors:  Davide Massa; Anna Tosi; Antonio Rosato; Valentina Guarneri; Maria Vittoria Dieci
Journal:  Cancers (Basel)       Date:  2022-10-06       Impact factor: 6.575

2.  A real-time GPU-accelerated parallelized image processor for large-scale multiplexed fluorescence microscopy data.

Authors:  Guolan Lu; Marc A Baertsch; John W Hickey; Yury Goltsev; Andrew J Rech; Lucas Mani; Erna Forgó; Christina Kong; Sizun Jiang; Garry P Nolan; Eben L Rosenthal
Journal:  Front Immunol       Date:  2022-09-23       Impact factor: 8.786

  2 in total

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