Literature DB >> 34112666

Analysis of multispectral imaging with the AstroPath platform informs efficacy of PD-1 blockade.

Sneha Berry1,2,3, Nicolas A Giraldo4, Benjamin F Green1,2,5, Alexander S Szalay1,6,7, Janis M Taube8,2,4,5, Tricia R Cottrell4, Julie E Stein4, Elizabeth L Engle1,2,5, Haiying Xu1,2,5, Aleksandra Ogurtsova1,2,5, Charles Roberts2,5, Daphne Wang5, Peter Nguyen5, Qingfeng Zhu4, Sigfredo Soto-Diaz2,5, Jose Loyola2,5, Inbal B Sander5, Pok Fai Wong9, Shlomit Jessel9, Joshua Doyle6,7, Danielle Signer5, Richard Wilton6,7, Jeffrey S Roskes6,7, Margaret Eminizer6,7, Seyoun Park1,10, Joel C Sunshine5, Elizabeth M Jaffee1,2,3, Alexander Baras4, Angelo M De Marzo3,4, Suzanne L Topalian2,11, Harriet Kluger12, Leslie Cope1,2,13, Evan J Lipson1,2,3, Ludmila Danilova1,2,13, Robert A Anders1,2,4, David L Rimm9, Drew M Pardoll1,2,3.   

Abstract

Next-generation tissue-based biomarkers for immunotherapy will likely include the simultaneous analysis of multiple cell types and their spatial interactions, as well as distinct expression patterns of immunoregulatory molecules. Here, we introduce a comprehensive platform for multispectral imaging and mapping of multiple parameters in tumor tissue sections with high-fidelity single-cell resolution. Image analysis and data handling components were drawn from the field of astronomy. Using this "AstroPath" whole-slide platform and only six markers, we identified key features in pretreatment melanoma specimens that predicted response to anti-programmed cell death-1 (PD-1)-based therapy, including CD163+PD-L1- myeloid cells and CD8+FoxP3+PD-1low/mid T cells. These features were combined to stratify long-term survival after anti-PD-1 blockade. This signature was validated in an independent cohort of patients with melanoma from a different institution.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2021        PMID: 34112666      PMCID: PMC8709533          DOI: 10.1126/science.aba2609

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  44 in total

1.  Standardization of immunohistochemistry for formalin-fixed, paraffin-embedded tissue sections based on the antigen-retrieval technique: from experiments to hypothesis.

Authors:  Shan-Rong Shi; Cheng Liu; Clive R Taylor
Journal:  J Histochem Cytochem       Date:  2006-09-18       Impact factor: 2.479

2.  Selective expansion of a subset of exhausted CD8 T cells by alphaPD-L1 blockade.

Authors:  Shawn D Blackburn; Haina Shin; Gordon J Freeman; E John Wherry
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-22       Impact factor: 11.205

3.  In-depth tissue profiling using multiplexed immunohistochemical consecutive staining on single slide.

Authors:  Romain Remark; Taha Merghoub; Niels Grabe; Geert Litjens; Diane Damotte; Jedd D Wolchok; Miriam Merad; Sacha Gnjatic
Journal:  Sci Immunol       Date:  2016-06-23

4.  Multiparametric immune profiling in HPV- oral squamous cell cancer.

Authors:  Zipei Feng; Daniel Bethmann; Matthias Kappler; Carmen Ballesteros-Merino; Alexander Eckert; R Bryan Bell; Allen Cheng; Tuan Bui; Rom Leidner; Walter J Urba; Kent Johnson; Clifford Hoyt; Carlo B Bifulco; Juergen Bukur; Claudia Wickenhauser; Barbara Seliger; Bernard A Fox
Journal:  JCI Insight       Date:  2017-07-20

5.  Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer.

Authors:  Naiyer A Rizvi; Matthew D Hellmann; Alexandra Snyder; Pia Kvistborg; Vladimir Makarov; Jonathan J Havel; William Lee; Jianda Yuan; Phillip Wong; Teresa S Ho; Martin L Miller; Natasha Rekhtman; Andre L Moreira; Fawzia Ibrahim; Cameron Bruggeman; Billel Gasmi; Roberta Zappasodi; Yuka Maeda; Chris Sander; Edward B Garon; Taha Merghoub; Jedd D Wolchok; Ton N Schumacher; Timothy A Chan
Journal:  Science       Date:  2015-03-12       Impact factor: 47.728

Review 6.  Implications of the tumor immune microenvironment for staging and therapeutics.

Authors:  Janis M Taube; Jérôme Galon; Lynette M Sholl; Scott J Rodig; Tricia R Cottrell; Nicolas A Giraldo; Alexander S Baras; Sanjay S Patel; Robert A Anders; David L Rimm; Ashley Cimino-Mathews
Journal:  Mod Pathol       Date:  2017-12-01       Impact factor: 7.842

7.  Progenitor and terminal subsets of CD8+ T cells cooperate to contain chronic viral infection.

Authors:  Michael A Paley; Daniela C Kroy; Pamela M Odorizzi; Jonathan B Johnnidis; Douglas V Dolfi; Burton E Barnett; Elizabeth K Bikoff; Elizabeth J Robertson; Georg M Lauer; Steven L Reiner; E John Wherry
Journal:  Science       Date:  2012-11-30       Impact factor: 47.728

8.  Effect of neoadjuvant chemotherapy on the immune microenvironment in non-small cell lung carcinomas as determined by multiplex immunofluorescence and image analysis approaches.

Authors:  Edwin R Parra; Pamela Villalobos; Carmen Behrens; Mei Jiang; Apar Pataer; Stephen G Swisher; William N William; Jiexin Zhang; Jack Lee; Tina Cascone; John V Heymach; Marie-Andrée Forget; Cara Haymaker; Chantale Bernatchez; Neda Kalhor; Annikka Weissferdt; Cesar Moran; Jianjun Zhang; Ara Vaporciyan; Don L Gibbons; Boris Sepesi; Ignacio I Wistuba
Journal:  J Immunother Cancer       Date:  2018-06-06       Impact factor: 13.751

9.  Validation of multiplex immunofluorescence panels using multispectral microscopy for immune-profiling of formalin-fixed and paraffin-embedded human tumor tissues.

Authors:  Edwin R Parra; Naohiro Uraoka; Mei Jiang; Pamela Cook; Don Gibbons; Marie-Andrée Forget; Chantale Bernatchez; Cara Haymaker; Ignacio I Wistuba; Jaime Rodriguez-Canales
Journal:  Sci Rep       Date:  2017-10-17       Impact factor: 4.379

10.  Multidimensional, quantitative assessment of PD-1/PD-L1 expression in patients with Merkel cell carcinoma and association with response to pembrolizumab.

Authors:  Nicolas A Giraldo; Peter Nguyen; Elizabeth L Engle; Genevieve J Kaunitz; Tricia R Cottrell; Sneha Berry; Benjamin Green; Abha Soni; Jonathan D Cuda; Julie E Stein; Joel C Sunshine; Farah Succaria; Haiying Xu; Aleksandra Ogurtsova; Ludmila Danilova; Candice D Church; Natalie J Miller; Steve Fling; Lisa Lundgren; Nirasha Ramchurren; Jennifer H Yearley; Evan J Lipson; Mac Cheever; Robert A Anders; Paul T Nghiem; Suzanne L Topalian; Janis M Taube
Journal:  J Immunother Cancer       Date:  2018-10-01       Impact factor: 13.751

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  25 in total

Review 1.  Clinical relevance of tumour-associated macrophages.

Authors:  Mikael J Pittet; Olivier Michielin; Denis Migliorini
Journal:  Nat Rev Clin Oncol       Date:  2022-03-30       Impact factor: 66.675

Review 2.  Current Perspectives on the Immunosuppressive Niche and Role of Fibrosis in Hepatocellular Carcinoma and the Development of Antitumor Immunity.

Authors:  Tomoko Aoki; Naoshi Nishida; Masatoshi Kudo
Journal:  J Histochem Cytochem       Date:  2021-11-09       Impact factor: 2.479

3.  Spatial UMAP and Image Cytometry for Topographic Immuno-oncology Biomarker Discovery.

Authors:  Alexander S Baras; Janis M Taube; Nicolas A Giraldo; Sneha Berry; Etienne Becht; Deniz Ates; Kara M Schenk; Elizabeth L Engle; Benjamin Green; Peter Nguyen; Abha Soni; Julie E Stein; Farah Succaria; Aleksandra Ogurtsova; Haiying Xu; Raphael Gottardo; Robert A Anders; Evan J Lipson; Ludmila Danilova
Journal:  Cancer Immunol Res       Date:  2021-08-25       Impact factor: 12.020

4.  Integrated Analytical System for Clinical Single-Cell Analysis.

Authors:  Hannah M Peterson; Lip Ket Chin; Yoshi Iwamoto; Juhyun Oh; Jonathan C T Carlson; Hakho Lee; Hyungsoon Im; Ralph Weissleder
Journal:  Adv Sci (Weinh)       Date:  2022-05-04       Impact factor: 17.521

Review 5.  Multimodal predictors for precision immunotherapy.

Authors:  L M Roelofsen; P Kaptein; D S Thommen
Journal:  Immunooncol Technol       Date:  2022-03-01

Review 6.  Next-generation sequencing: unraveling genetic mechanisms that shape cancer immunotherapy efficacy.

Authors:  Ahmed Halima; Winston Vuong; Timothy A Chan
Journal:  J Clin Invest       Date:  2022-06-15       Impact factor: 19.456

Review 7.  Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging.

Authors:  John W Hickey; Elizabeth K Neumann; Andrea J Radtke; Jeannie M Camarillo; Rebecca T Beuschel; Alexandre Albanese; Elizabeth McDonough; Julia Hatler; Anne E Wiblin; Jeremy Fisher; Josh Croteau; Eliza C Small; Anup Sood; Richard M Caprioli; R Michael Angelo; Garry P Nolan; Kwanghun Chung; Stephen M Hewitt; Ronald N Germain; Jeffrey M Spraggins; Emma Lundberg; Michael P Snyder; Neil L Kelleher; Sinem K Saka
Journal:  Nat Methods       Date:  2021-11-22       Impact factor: 47.990

8.  Building Tools for Machine Learning and Artificial Intelligence in Cancer Research: Best Practices and a Case Study with the PathML Toolkit for Computational Pathology.

Authors:  Jacob Rosenthal; Ryan Carelli; Mohamed Omar; David Brundage; Ella Halbert; Jackson Nyman; Surya N Hari; Eliezer M Van Allen; Luigi Marchionni; Renato Umeton; Massimo Loda
Journal:  Mol Cancer Res       Date:  2021-12-08       Impact factor: 6.333

9.  Data-Rich Spatial Profiling of Cancer Tissue: Astronomy Informs Pathology.

Authors:  Alexander S Szalay; Janis M Taube
Journal:  Clin Cancer Res       Date:  2022-08-15       Impact factor: 13.801

Review 10.  Multicellular modules as clinical diagnostic and therapeutic targets.

Authors:  Marc-A Baertsch; Garry P Nolan; John W Hickey
Journal:  Trends Cancer       Date:  2021-12-03
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