| Literature DB >> 34870284 |
Ludwig Knabl1, Tanmay Mitra2, Janine Kimpel1, Annika Rössler1, André Volland1, Andreas Walser3, Hanno Ulmer4, Lisa Pipperger1, Sebastian C Binder2, Lydia Riepler1, Katie Bates4, Arnab Bandyopadhyay2, Marta Schips2, Mrinalini Ranjan2,5, Barbara Falkensammer1, Wegene Borena1, Michael Meyer-Hermann2,6, Dorothee von Laer1.
Abstract
BACKGROUND: In early March 2020, a SARS-CoV-2 outbreak in the ski resort Ischgl in Austria initiated the spread of SARS-CoV-2 throughout Austria and Northern Europe.Entities:
Keywords: SARS virus; Viral epidemiology; Viral infection
Year: 2021 PMID: 34870284 PMCID: PMC8633917 DOI: 10.1038/s43856-021-00007-1
Source DB: PubMed Journal: Commun Med (Lond) ISSN: 2730-664X
Baseline characteristics of study participants.
| A. Sociodemographic data | ||
|---|---|---|
| Variables | Value | |
| 1473 (100) | ||
| Male | 712 (48.3) | |
| Female | 759 (51.5) | |
| Diverse | 2 (0.1) | |
| Male | 40.3 (19.5) 40 | |
| Female | 40.9 (20.1) 40 | |
| Children (<18) | 10.2 (4.9) 10.5 | |
| Adults (≥18) | 45.8 (16.5) 45 | |
| <6 | 52 (3.5) | |
| 6–9 | 49 (3.3) | |
| 10–13 | 57 (3.9) | |
| 14–17 | 56 (3.8) | |
| 18–24 | 124 (8.4) | |
| 25–34 | 256 (17.4) | |
| 35–44 | 239 (16.2) | |
| 45–54 | 238 (16.2) | |
| 55–64 | 225 (15.3) | |
| 65–74 | 117 (7.9) | |
| ≥75 | 60 (4.1) | |
aOne of the nine study-site-PCR positive participants was tested SARS-CoV-2-PCR positive before (on 23.03.2020).
Determining true antibody positivity.
| Anti-S IgG + Anti-N IgG + | Anti-S IgG + Anti-N IgG- | Anti-S IgG - Anti-N IgG + | Anti-S IgA onlyc | 3 ELISAs negative and PCR positived | 3 ELISAs negative and PCR negative | |
|---|---|---|---|---|---|---|
Total | 544 (36.9) | 38 (2.6) | 36 (2.4) | 26 (1.7) | 6 (0.4) | 823 (55.9) |
Neutralisation Assay >1:4 | 201/201a (100) | 32/37b (88.5) | 36/36 (100) | 10/26 (38.5) | 1/3 (33.3) | n.a. |
| Rate as positive | 544 (87.2) | 34 (5.4) | 36 (5.8) | 10 (1.6) | 0 (0.0) | 0 (0.0) |
Reported PCR positive | 95 (90.5) | 3 (2.9) | 4 (3.8) | 0 (0.0) | 3 (2.9) | 0 (0.0) |
New PCR-confirmed cases | 2 (25) | 1 (12.5) | 0 (0.0) | 2 (25) | 3 (37.5) | 0 (0.0) |
S spike protein, N nucleocapsid protein, n.a. not applicable.
aNot all Anti-S IgG+ Anti-N IgG+ positive samples were tested in the neutralization assay.
bNo sample left for neutralizing antibody assay for one patient.
cAnti-S IgA available for n = 975 participants.
dPCR positive includes results of self-reported PCR prior to study as well as positive PCR results obtained during the study.
eOne person excluded as PCR positivity already known (included in the reported PCR positive group).
Fig. 1Seroprevalence and clinical course.
a The seroprevalence in different sex and age groups was calculated using a generalized estimating equation (GEE)-model taking household clusters into account, n = 1473. Shown are estimated means and 95% CI. b Clinical courses of COVID-19 in seropositive adult individuals (n = 566) were classified based on the information provided by the study participants. Mild disease was defined as reported COVID-19-associated symptoms not requiring hospitalization. In addition, all study participants were asked if a SARS-CoV-2 PCR was carried out and its result. Symptoms reported before February 23rd were excluded as the peak of the influenza season was in the first half of February and the odds ratios(OR) for reported symptoms and SARS-CoV-2 seropositivity were low then. c Odds ratios of self-reported symptoms regarding seropositivity in adults (n = 1259) were calculated using generalized estimating equation (GEE)-model adjusted for age and sex, taking household clustering in account. d Odds ratios of self-reported symptoms and symptoms reported by persons of care and custody, respectively, regarding seropositivity in children (n = 214) were calculated using generalized estimating equation (GEE)-model adjusted for age and sex, taking household clustering in account). Shown in (c) and (d) are odds ratios and 95% CI.
Fig. 2Analysis of PCR testing in Ischgl.
a SARS-CoV-2 PCR results from 7 March to 29 April 2020 were provided by the district administration. On 7 March 2020 the first person in Ischgl was tested positive for SARS-CoV-2. On 10 March 2020, most of the main entertainment venues in the ski resort were closed. On 13 March 2020, a complete lockdown was declared due to a rapidly increasing number of new cases and the village was quarantined. On 8 April and 9 April 2020, the state health authority carried out a screening examination in which 234 people were tested for SARS-CoV-2. b From the PCR testing data provided by the local authority, we calculated the average number of tests done per confirmed PCR result (), in terms of the ratio of total PCR tests done till a day and total number of PCR positive individuals till one day prior to it. c The PCR screening during this study was performed between 21 April and 27 April 2020 in Ischgl.
Fig. 3Mathematical analysis of the outbreak.
The time-course of new cases in Ischgl based on any COVID-19 associated symptom among seropositive individuals as obtained from the survey (a) was used to determine the daily infection transmission rate () for each of the sampled parameter sets (see Supplementary Methods). The, thus, calibrated model reproduces the cumulative number of symptomatic cases (b) and characterizes the time-dependent reproduction number (c). Time-dependent alterations in the effective reproduction number (d) were calculated as , being the fraction of the susceptible population at a certain time t. Seroprevalence necessary for herd immunity (, green shaded region) and basic reproduction number (, right ordinate axis, red box plots) are shown as functions of (e). The analysis was done with 100 parameter sets following calibration of to best describe the case numbers until Mar 16 at a full stretch (see fitting strategy in the Supplementary Methods). in Ischgl was in between 2.2 and 3.1, with a median value of around 2.5, which corresponds to a median value of around 60% seroprevalence to reach herd immunity ( corresponding to median , purple line). This is consistent with herd-immunity seroprevalence (blue box plot) derived from the medians of the mean contact dependent daily transmission rate for the time-windows spanning 23 February–16 March and 28 February–16 March (gray patch, bounded by these medians). The observed seroprevalence as of April 2020 (green line) is lower than the thresholds. We assume that the seropositive individuals who reported their onset of symptoms before 23 February 2020 during the survey were not symptomatic due to COVID-19 at that time, rather they might have an asymptomatic course of COVID-19 later. Boxplots show median, interquartile range and whiskers with maximal 1.5× interquartile range.