| Literature DB >> 34860432 |
Florian Philippe1, Nelly Dubrulle1, Benjamin Marteaux1, Brice Bonnet2, Patrick Choisy3, Jean-Yves Berthon4, Laurence Garnier2, Nadine Leconte5, Sandrine Milesi6, Pierre-Yves Morvan7, Alex Saunois8, Jian-Sheng Sun9, Sandrine Weber6, Nicole Giraud1.
Abstract
OBJECTIVE: This study was initiated and conducted by several laboratories, 3 of the main cosmetic ingredient suppliers and 4 brands of cosmetics in France. Its objective is to show the interest and robustness of coupling chemical and genetic analyses in the identification of plant species. In this study, the Lavandula genus was used.Entities:
Keywords: barcoding; bioinformatics; chemical analysis; lavender; plant authentication
Mesh:
Substances:
Year: 2021 PMID: 34860432 PMCID: PMC9305429 DOI: 10.1111/ics.12757
Source DB: PubMed Journal: Int J Cosmet Sci ISSN: 0142-5463 Impact factor: 2.416
Markers and their characteristics
| Marker name | Genetic region | Primer name | Sequence (5′−3′) |
|---|---|---|---|
| B1 |
| rbcLbF | AGACCTWTTTGAAGAAGGTTCWGT |
| rbcLbR | TCGGTYAGAGCRGGCATRTGCCA | ||
| B2 |
| psbA3′ f | GTTATGCATGAACGTAATGCTC |
| trnHf_05 | CGCGCATGGTGGATTCACAATCC | ||
| Lav1 |
| LavF1 | CTGCGGAAGGATCATTGT |
| LavR1 | TTGATATGCTTAAACTCAGC |
FIGURE 1UHPLC‐DAD chromatograms of 11 Lavander samples. The blue, green, yellow, purple, pink and red rectangles correspond to the representative molecules of cluster 1, 2, 3, 4 and 5 respectively
Criteria for differentiating samples
| Samples | Cluster | Criteria | ||||||
|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | ||
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| 1 | x | x | |||||
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| x | x | x | x | ||||
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| x | x | ||||||
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| x | x | x | x | ||||
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| 2 | x | x | |||||
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| x | x | x | |||||
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| x | x | ||||||
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| 3 | x | x | |||||
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| 4 | x | x | x | ||||
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| 5 | x | x | x | x | |||
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| 6 | x | x | x | x | |||
Each criterion was selected by major presence or absence of compounds. The “x” validates the criterion. The samples were classified into each cluster according to the following criteria. Criteria 1: compounds 8 (Coumaric acid hexoside) and 14 (Ferulic acid hexoside) major presence, Criteria 2: Compound 53 (rosmarinic acid) major presence, Criteria 3: presence of compounds 15 (hydroxy hydrocinnamic acid glucoside) and 16 (cinnamic acid derivative), Criteria 4: absence of compounds 15 and 16, Criteria 5: presence of depsides family, Criteria 6: presence of compound 93 (Linalyl acetate), Criteria 7: presence of diterpenes family.
FIGURE 2Phylogenetic tree of plant samples with rbcl and trnH‐psbA genetic markers. Phylogenetic tree built with chimeric sequences of rbcl and trnH‐psbA genetic markers results using Geneious® software with UPGMA method. Branch support was based on 1000 bootstrap replicates and is shown at the nodes. The bar represents 0.004 substitutions per site
FIGURE 3Phylogenetic tree of plant samples with Lav genetic marker. Phylogenetic tree built with compilation of rbcl and trnH‐psbA markers genetic data using Geneious® software with UPGMA method. Branch support was based on 1000 bootstrap replicates and is shown at the nodes. The bar represents 0.004 substitutions per site
FIGURE 4Phylogenetic tree of plant samples with a chimeric construction of all genetic marker results. Phylogenetic tree built with all genetic markers (BOLD markers and new specific designed marker) results using Geneious® software with UPGMA method and the bootstrap values from 1000 replicates. The bar represents 0.006 substitutions per site