Literature DB >> 35829836

WRKY transcription factors: evolution, regulation, and functional diversity in plants.

Pooja Goyal1,2,3, Ritu Devi1,2,4, Bhawana Verma1,2,4, Shahnawaz Hussain1,2,4, Palak Arora1,2, Rubeena Tabassum1,2,4, Suphla Gupta5,6.   

Abstract

The recent advancements in sequencing technologies and informatic tools promoted a paradigm shift to decipher the hidden biological mysteries and transformed the biological issues into digital data to express both qualitative and quantitative forms. The transcriptomic approach, in particular, has added new dimensions to the versatile essence of plant genomics through the large and deep transcripts generated in the process. This has enabled the mining of super families from the sequenced plants, both model and non-model, understanding their ancestry, diversity, and evolution. The elucidation of the crystal structure of the WRKY proteins and recent advancement in computational prediction through homology modeling and molecular dynamic simulation has provided an insight into the DNA-protein complex formation, stability, and interaction, thereby giving a new dimension in understanding the WRKY regulation. The present review summarizes the functional aspects of the high volume of sequence data of WRKY transcription factors studied from different species, till date. The review focuses on the dynamics of structural classification and lineage in light of the recent information. Additionally, a comparative analysis approach was incorporated to understand the functions of the identified WRKY transcription factors subjected to abiotic (heat, cold, salinity, senescence, dark, wounding, UV, and carbon starvation) stresses as revealed through various sets of studies on different plant species. The review will be instrumental in understanding the events of evolution and the importance of WRKY TFs under the threat of climate change, considering the new scientific evidences to propose a fresh perspective.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.

Entities:  

Keywords:  Abiotic stress; Carbon starvation; Regulation; Structural classification; WRKY lineage; WRKY protein

Year:  2022        PMID: 35829836     DOI: 10.1007/s00709-022-01794-7

Source DB:  PubMed          Journal:  Protoplasma        ISSN: 0033-183X            Impact factor:   3.186


  102 in total

1.  CaWRKY6 transcriptionally activates CaWRKY40, regulates Ralstonia solanacearum resistance, and confers high-temperature and high-humidity tolerance in pepper.

Authors:  Hanyang Cai; Sheng Yang; Yan Yan; Zhuoli Xiao; Junbin Cheng; Ji Wu; Ailian Qiu; Yan Lai; Shaoliang Mou; Deyi Guan; Ronghua Huang; Shuilin He
Journal:  J Exp Bot       Date:  2015-04-06       Impact factor: 6.992

2.  Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.

Authors:  Rainer P Birkenbihl; Barbara Kracher; Mario Roccaro; Imre E Somssich
Journal:  Plant Cell       Date:  2016-12-23       Impact factor: 11.277

3.  Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses.

Authors:  Jiani Chen; Trevor M Nolan; Huaxun Ye; Mingcai Zhang; Hongning Tong; Peiyong Xin; Jinfang Chu; Chengcai Chu; Zhaohu Li; Yanhai Yin
Journal:  Plant Cell       Date:  2017-06-02       Impact factor: 11.277

4.  The WRKY6 transcription factor modulates PHOSPHATE1 expression in response to low Pi stress in Arabidopsis.

Authors:  Yi-Fang Chen; Li-Qin Li; Qian Xu; You-Han Kong; Hui Wang; Wei-Hua Wu
Journal:  Plant Cell       Date:  2009-11-24       Impact factor: 11.277

5.  Potentiation of developmentally regulated plant defense response by AtWRKY18, a pathogen-induced Arabidopsis transcription factor.

Authors:  Chunhong Chen; Zhixiang Chen
Journal:  Plant Physiol       Date:  2002-06       Impact factor: 8.340

6.  WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana.

Authors:  Sébastien Besseau; Jing Li; E Tapio Palva
Journal:  J Exp Bot       Date:  2012-01-20       Impact factor: 6.992

7.  OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.

Authors:  Liping Chen; Yuan Zhao; Shujuan Xu; Zeyong Zhang; Yunyuan Xu; Jingyu Zhang; Kang Chong
Journal:  New Phytol       Date:  2018-01-24       Impact factor: 10.151

8.  A WRKY transcription factor, PcWRKY33, from Polygonum cuspidatum reduces salt tolerance in transgenic Arabidopsis thaliana.

Authors:  Wenqi Bao; Xiaowei Wang; Mo Chen; Tuanyao Chai; Hong Wang
Journal:  Plant Cell Rep       Date:  2018-04-24       Impact factor: 4.570

9.  Elucidating the evolutionary conserved DNA-binding specificities of WRKY transcription factors by molecular dynamics and in vitro binding assays.

Authors:  Luise H Brand; Nina M Fischer; Klaus Harter; Oliver Kohlbacher; Dierk Wanke
Journal:  Nucleic Acids Res       Date:  2013-08-23       Impact factor: 16.971

10.  Genome-wide identification and characterization of WRKY gene family in Salix suchowensis.

Authors:  Changwei Bi; Yiqing Xu; Qiaolin Ye; Tongming Yin; Ning Ye
Journal:  PeerJ       Date:  2016-09-07       Impact factor: 2.984

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  1 in total

1.  Involvement of JMJ15 in the dynamic change of genome-wide H3K4me3 in response to salt stress.

Authors:  Yuan Shen; Yuhao Chi; Shun Lu; Huijuan Lu; Lei Shi
Journal:  Front Plant Sci       Date:  2022-09-26       Impact factor: 6.627

  1 in total

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