| Literature DB >> 34852811 |
Ye-In Oh1, Kyoung-Won Seo1, Do-Hyung Kim2, Doo-Sung Cheon3.
Abstract
BACKGROUND: Diarrhea is one of the most common clinical symptoms in cats and can be caused by infectious pathogens and investigation of the prevalence, co-infection and seasonality of enteropathogens are not well-established in diarrheic cats.Entities:
Keywords: Diarrhea; Feline; Infection; Real-time PCR
Mesh:
Year: 2021 PMID: 34852811 PMCID: PMC8633091 DOI: 10.1186/s12917-021-03075-6
Source DB: PubMed Journal: BMC Vet Res ISSN: 1746-6148 Impact factor: 2.741
The details of real-time PCR for the detection of feline enteropathogens
| Pathogen | Target gene | Real-time PCR conditions | ||
|---|---|---|---|---|
| PCR protocol | Primer/Probe concentration | LODc | ||
| Feline coronavirus | M | RT PCRa | Primer: 10pmole/Rx Probe: 5pmole/Rx | 10 copies |
| cpa | PCRb | // | 100 copies/Rx | |
| gyrB | PCR | // | 100 copies/Rx | |
| Feline parvovirus | vp2 | PCR | // | 10 copies/Rx |
| ITS1 | PCR | // | 100 copies/Rx | |
| EPEC | bfpA | PCR | // | 100 copies/Rx |
| 18 s rRNA | PCR | // | 10 copies/Rx | |
| ETEC | ST/LT | PCR | // | 100 copies/Rx |
| rimB | PCR | // | 100 copies/Rx | |
| EHEC | stx1/stx2 | PCR | // | 10 copies/Rx |
| Group A Rotavirus | nsp4 | RT PCR | // | 10 copies/Rx |
| 18 s rRNA | PCR | // | 100 copies/Rx | |
| 18 s rRNA | PCR | // | 100 copies/Rx | |
| EIEC | ipaH | PCR | // | 100 copies/Rx |
| invE | PCR | // | 100 copies/Rx | |
| 18 s rRNA | PCR | // | 100 copies/Rx | |
| ITS1 | PCR | // | 100 copies/Rx | |
| RE | PCR | // | 100 copies/Rx | |
| FIV | gag | PCR | // | 100 copies/Rx |
C. perfringens Clostridium perfringens, C. coli Campylobacter coli, T. foetus Tritrichomonas foetus, EPEC enteropathogenic Escherichia coli, ETEC enterotoxigenic Escherichia coli, C. jejuni Campylobacter jejuni, EHEC enterohemorrhagic Escherichia coli, C. parvum Cryptosporidium parvum, C. cayetanensis Cyclospora cayartensis, EIEC enteroinvasive Escherichia coli, E. histolytica Entamoeba histolytica, FIV feline immunodeficiency virus
aPCR thermal condition: 95 °C, 5 min (95 °C, 10 s – 60 °C, 30 s; 45 cycles)
bRT PCR thermal condition: 50 °C, 15 min – 95 °C, 5 min (95 °C, 10 s – 60 °C, 30 s; 45 cycles)
cLOD (limitation of detection) was determined to be 10 folds serial dilutions of synthetic plasmid including target gene of individual pathogen based on a CT value of 40
Prevalence of enteropathogens from feline fecal specimens based on age
| Enteropathogen | Total prevalence, % (n) | Age | |||
|---|---|---|---|---|---|
| < 1 year | 1–7 years | ≥ 8 years | |||
| Feline coronavirus | 29.37 (819) | 31.33 (104) | 29 (643) | 30 (72) | < 0.0001 |
| 23.84 (665) | 19.58 (65) | 23.73 (526) | 30.83 (74) | 0.75 | |
| 14.88 (415) | 17.17 (57) | 15.25 (338) | 8.3 (20) | < .0001 | |
| Feline parvovirus | 7.49 (209) | 5.72 (19) | 7.76 (172) | 7.5 (18) | 0.28 |
| 6.7 (187) | 7.23 (24) | 6.9 (153) | 4.17 (10) | 0.015 | |
| EPEC | 4.7 (131) | 7.53 (25) | 4.19 (93) | 5.42 (13) | 0.0029 |
| 4.52 (126) | 4.82 (16) | 4.83 (107) | 1.25 (3) | 0.0036 | |
| ETEC | 2.62 (73) | 3.31 (11) | 2.21 (49) | 5.42 (13) | 0.06 |
| 1.76 (49) | 2.11 (7) | 1.71 (38) | 1.67 (4) | 0.54 | |
| EHEC | 1 (28) | 0 (0) | 1.08 (24) | 1.67 (4) | 0.19 |
| Group A Rotavirus | 0.79 (22) | 0 (0) | 0.9 (20) | 0.84 (2) | 0.24 |
| 0.75 (21) | 0.3 (1) | 0.81 (18) | 0.84 (2) | 0.6 | |
| 0.68 (19) | 0.3 (1) | 0.72 (16) | 0.84 (2) | 0.75 | |
| EIEC | 0.36 (10) | 0 (0) | 0.32 (7) | 1.25 (3) | 0.12 |
| 0.25 (7) | 0.3 (1) | 0.27 (6) | 0 (0) | 0.62 | |
| 0.11 (3) | 0 (0) | 0.13 (3) | 0 (0) | 0.66 | |
| 0.07 (2) | 0.3 (1) | 0.05 (1) | 0 (0) | 0.18 | |
| 0.07 (2) | 0 (0) | 0.09 (2) | 0 (0) | 0.76 | |
| FIV | 0.04 (1) | 0 (0) | 0.05 (1) | 0 (0) | 0.88 |
| Total | 100 (2789) | 100 (332) | 100 (2217) | 100 (240) | |
C. perfringens Clostridium perfringens, C. coli Campylobacter coli, T. foetus Tritrichomonas foetus, EPEC enteropathogenic Escherichia coli, ETEC enterotoxigenic Escherichia coli, C. jejuni Campylobacter jejuni, EHEC enterohemorrhagic Escherichia coli, C. parvum Cryptosporidium parvum, C. cayetanensis Cyclospora cayartensis, EIEC enteroinvasive Escherichia coli, E. histolytica Entamoeba histolytica, FIV feline immunodeficiency virus
The prevalence of each enteropathogen between age groups was compared statistically using the Chi-square test. *P < 0.05
Fig. 1Seasonal distribution of enteropathogens from January to December in 1620 feline patients with diarrhea. A Prevalence of bacterial, viral, and protozoal infections by month in all feline patients. B Prevalence of the 10 most common enteropathogens in each month of this study. The infection rates of enteropathogens for each month were compared statistically using the Chi-square test for trend. *P < 0.05
Fig. 2Frequency of detection of multiple enteropathogens in 1620 fecal specimens based on feline patient age. A Comparison of the number of enteropathogens simultaneously detected based on patient age. B Comparison of the number of bacterial, viral, and protozoal enteropathogens based on patient age. C Comparison of infection type based on patient age. The infection rates of enteropathogen between age groups were compared statistically using the Chi-square test. *P < 0.05
Prevalence and infection patterns of enteropathogens from fecal specimens in cats with diarrhea
| Pathogen | Prevalence of pathogen % (n) | ||
|---|---|---|---|
| Single infection | Mixed infection | Co-infection | |
| Feline coronavirus | 39.33 (188) | 11.27 (31) | 29.47 (600) |
| 26.78 (128) | 32.73 (90) | 21.95 (447) | |
| 12.76 (61) | 22.18 (61) | 14.39 (293) | |
| Feline parvovirus | 7.11 (34) | 8.36 (23) | 7.47 (152) |
| 2.3 (11) | 0.36 (1) | 8.6 (175) | |
| EPEC | 3.77 (18) | 10.18 (28) | 4.17 (85) |
| 1.46 (7) | 0.37 (1) | 5.8 (118) | |
| ETEC | 3.14 (15) | 5.81 (16) | 2.06 (42) |
| 1.26 (6) | 3.27 (9) | 1.67 (34) | |
| EHEC | 0.42 (2) | 1.45 (4) | 1.08 (22) |
| Group A Rotavirus | 0 (0) | 2.55 (7) | 0.69 (14) |
| 0.42 (2) | 0 (0) | 0.98 (20) | |
| 0.42 (2) | 0 (0) | 0.83 (17) | |
| EIEC | 0.42 (2) | 0.73 (2) | 0.29 (6) |
| 0.21 (1) | 0.37 (1) | 0.25 (5) | |
| 0.21 (1) | 0 (0) | 0.1 (2) | |
| 0 (0) | 0 (0) | 0.1 (2) | |
| 0 (0) | 0 (0) | 0.1 (2) | |
| FIV | 0 (0) | 0.37 (1) | 0 (0) |
| Total | 100 (478) | 100 (275) | 100 (2036) |
C. perfringens Clostridium perfringens, C. coli Campylobacter coli, T. foetus Tritrichomonas foetus, EPEC enteropathogenic Escherichia coli, ETEC enterotoxigenic Escherichia coli, C. jejuni Campylobacter jejuni, EHEC enterohemorrhagic Escherichia coli, C. parvum Cryptosporidium parvum, C. cayetanensis Cyclospora cayartensis, EIEC enteroinvasive Escherichia coli, E. histolytica Entamoeba histolytica, FIV feline immunodeficiency virus
Fig. 3Frequency of mixed infection patterns of enteropathogens from fecal specimens in 1620 feline diarrheic patients. CC, Campylobacter coli; CJ, Campylobacter jejuni; CP, Clostridium perfringens; EH, enterohemorrhagic Escherichia coli; EI, enteroinvasive Escherichia coli; EP, enteropathogenic Escherichia coli; ET, enterotoxigenic Escherichia coli; FECV, Feline coronavirus; FI, Feline immunodeficiency virus; FP, Feline parvovirus; GL, Giardia lamblia; RO, Group A Rotavirus; SA, Salmonella spp.; TF, Tritrichomonas fetus
Fig. 4Frequency of co-infection patterns of enteropathogens from fecal specimens in 1620 feline diarrheic patients. A Type of bacterial-viral co-infection. B Type of bacterial-protozoal co-infection. C Type of viral-protozoal co-infection. D Type of bacterial-viral-protozoal co-infection. CC, Campylobacter coli; CJ, Campylobacter jejuni; CP, Clostridium perfringen; CR, Cryptosporidium parvum; CY, Cyclospora cayartensis; EH, enterohemorrhagic Escherichia coli; EI, enteroinvasive Escherichia coli; EP, enteropathogenic Escherichia coli, ET, enterotoxigenic Escherichia coli; FECV, Feline coronavirus; FI, Feline immunodeficiency virus; FP, Feline parvovirus; GL, Giardia lamblia; RO, Group A Rotavirus; SA, Salmonella spp.; TF, Toxocara felis; TG, Toxoplasma gondii; TT, Tritrichomonas fetus