Literature DB >> 34850243

Severity of SARS-CoV-2 infection is linked to double-negative (CD27- IgD-) B cell subset numbers.

Rodrigo Cervantes-Díaz1,2, Víctor Andrés Sosa-Hernández1,3, Jiram Torres-Ruíz4,5, Sandra Romero-Ramírez1,2, Mariana Cañez-Hernández1, Alfredo Pérez-Fragoso4, José C Páez-Franco1, David E Meza-Sánchez1, Miriam Pescador-Rojas6, Víctor Adrián Sosa-Hernández7, Diana Gómez-Martín4, José L Maravillas-Montero8.   

Abstract

OBJECTIVES: The role of B cells in COVID-19, beyond the production of specific antibodies against SARS-CoV-2, is still not well understood. Here, we describe the novel landscape of circulating double-negative (DN) CD27- IgD- B cells in COVID-19 patients, representing a group of atypical and neglected subpopulations of this cell lineage.
METHODS: Using multiparametric flow cytometry, we determined DN B cell subset amounts from 91 COVID-19 patients, correlated those with cytokines, clinical and laboratory parameters, and segregated them by principal components analysis.
RESULTS: We detected significant increments in the DN2 and DN3 B cell subsets, while we found a relevant decrease in the DN1 B cell subpopulation, according to disease severity and patient outcomes. These DN cell numbers also appeared to correlate with pro- or anti-inflammatory signatures, respectively, and contributed to the segregation of the patients into disease severity groups.
CONCLUSION: This study provides insights into DN B cell subsets' potential role in immune responses against SARS-CoV-2, particularly linked to the severity of COVID-19.
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  B cell; COVID-19; DN B cell; Inflammation

Mesh:

Substances:

Year:  2021        PMID: 34850243      PMCID: PMC8631699          DOI: 10.1007/s00011-021-01525-3

Source DB:  PubMed          Journal:  Inflamm Res        ISSN: 1023-3830            Impact factor:   4.575


Introduction

B cells represent one of the main elements of the adaptive humoral immune system since they are responsible for mediating the production of antibodies directed against potential pathogens. The canonical classification strategies segregate human circulating B cells into different populations: transitional B cells (CD24hi CD38hi CD27−) that constitutes recent bone marrow emigrants, naïve B cells (CD38lo/− CD27− IgD+) representing mature B cells that have never been stimulated by their cognate antigens, memory B cells (CD38lo/− CD27+) that are developed following a primary infection and remain in a quiescent state until they encounter the same antigen to become activated and induce a robust secondary response that includes their differentiation into plasmablasts/plasma cells (CD38hi CD27hi) which are the responsible for antibody secretion [1]. Recently, the development of single-cell genomic approaches and high-dimensional flow cytometry has allowed identifying emerging B cell populations with distinctive phenotypes and divergent functional characteristics [2, 3]. In 2007, it was described the expansion of an unknown B cell subset characterized by the absence of both IgD and CD27 (double-negative, DN) in systemic lupus erythematosus (SLE) patients, thus being postulated that they could represent a novel memory population [4]. Additional heterogeneity within the DN population has been recently established, where these cells comprise four major subsets: DN1 to DN4 B cells, based on their relative expression of CD21 and CD11c [3, 5, 6]. Although not clear yet, it has been suggested that DN1 may represent early activated memory cells, whereas DN2 cells would embody primed antibody-secreting cells (ASC) precursors derived from newly activated naïve cells [7]. The absence of CD21 and CD11c defines DN3 B cells, while both markers are expressed by DN4 B cells [3], but the function and significance of these subsets, particularly in contexts different from autoimmune diseases, remain to be elucidated. Over the last couple of years, the worldwide Coronavirus disease 2019 (COVID-19) pandemic situation has been rushed the characterization of different anti-viral immune-mediated mechanisms aimed to resolve this emergent illness. COVID-19 is caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that may evolve asymptomatically or with mild symptoms in most patients. In contrast, others suffer from acute respiratory distress syndrome (ARDS) with a poor prognosis [8]. The severity of COVID-19 depends on the balance of host immune responses against viral stimuli. In severe cases, this response is deregulated and characterized by a hyperinflammatory status originated by high levels of cytokines and pro-inflammatory molecules, known as cytokine storm [9]. Interestingly, COVID-19 patients display alterations in different myeloid and lymphoid cells that are associated with several clinical features [10, 11]; among these leucocyte subsets, B cells remain as one of the less-studied cell types in this disease with few reports that go beyond the analysis of a total CD19+ B cell population in small or limited cohorts of patients [6, 12]. In this context, the contribution to disease of rare B cell subsets such as DN subpopulations remains poorly understood. According to their phenotype, DN B cells could be contained in the subset commonly referred to as atypical B cells, observed at high frequencies during autoimmune disease including arthritis or SLE, and chronic infections with hepatitis C virus, human immunodeficiency virus (HIV), or malaria [4, 13–16]. Some authors consider these B cells as anergic or exhausted due to chronic antigenic stimulation since some express high levels of inhibitory receptors, such as Fc-receptor-like (FCRL) molecules [15]. However, this population’s “exhausted” description is conflicting with the previously mentioned SLE patients exhibiting high numbers of these atypical B cells, which have been proposed as activated lymphocytes in the process of differentiation to ASC [7]. Accordingly, it has been shown that their specific B cell receptors (BCRs) to Plasmodium falciparum could also contribute to the anti-parasitic antibodies’ generation [17]. As similar B cell phenotypes arise after influenza or yellow fever vaccination, vaccinia immunization, and primary HIV infection [18, 19], it could be suggested that these cells are part of protective immune responses. To elucidate if DN B cells could be friend or foe during SARS-CoV-2 acute infection, we analyzed the numbers of these cell compartments in peripheral blood of COVID-19 patients with different disease severity and found several differences that seem to contribute to segregate the disease severity status.

Methods

COVID-19 patients and healthy donors

91 COVID-19 patients and 15 healthy donors were recruited at Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán in Mexico City, Mexico. All patients confirmed by a positive PCR test for SARS-CoV-2 were invited to be included in the study. Upon admission, vital signs including respiratory rate (RR) and oxygen saturation (SO2), plus the number of days after symptom onset (DaSO) information were collected. Laboratory tests were taken, including arterial blood gas analysis, leukocyte (Lk), lymphocyte (Lt), and neutrophil (Nt) counts, liver function tests (alanine aminotransferase; ALT, and aspartate aminotransferase; AST), albumin (Alb), C-reactive protein (CRP), lactate dehydrogenase (LDH), fibrinogen (Fib), D-dimer (Dd), troponin (Trp). Additionally, the National Early Warning Score (NEWS) was determined for each patient. The severity of the disease was classified in the following patient groups: mild/moderate (n = 24): fever, signs of airway disease, with or without a tomographic image indicating pneumonia. Severe (n = 35): any of the following: SO2 < 92% at rest, respiratory rate > 30 rpm, respiratory failure, arterial partial pressure of oxygen (PaO2)/fraction of inspired oxygen (FiO2) ratio (PaO2/FiO2 or PaFi) < 300 mmHg. Critical (n = 32): any of the following: requirement for mechanical ventilation, shock, or concomitant organ failure [20]. PCR test-negative individuals without respiratory symptoms were recruited as controls. Samples from reported asthmatic, HIV, cancer, autoimmune disease, or pregnant individuals (both patients and controls) were not included in this study. All the available demographic information and features of these patients and controls are depicted in Table 1.
Table 1

Features of COVID-19 patients

CharacteristicHealthy individuals (n = 15)All patients (n = 91)Mild/moderate (n = 24)Severe (n = 35)Critical (n = 32)
Gender—number (%)
 Female6 (40)31 (34)10 (42)16 (46)5 (16)
 Male9 (60)60 (66)14 (58)19 (54)27 (84)
Age in years—median (range)45 (24–64)48 (23–80)32 (25–68)50 (23–80)54 (33–80)
Diagnosis of SARS-COV-2 (%)
 PCR + (nasopharyngeal swab)0 (0)91 (100)24 (100)35 (100)32 (100)
Days of symptoms—median (range)NA7 ± 5.1 (1–30)3.5 ± 4.3 (1–21)9 ± 4.7 (1–22)8 ± 5.2 (3–30)
Measure of illness severity and vital signs—median ± SD
 NEWSND8 ± 3.662 ± 1.568 ± 2.5510 ± 2.19
 Respiratory rateND24 ± 9.9918 ± 3.5724 ± 6.9535.5 ± 9.23
 SO2ND88 ± 17.1895 ± 2.288 ± 9.6962 ± 17.53
 PaO2/FiO2ND244 ± 108.5304.8 ± 11.33247 ± 104.798 ± 82.2
Laboratory values—median ± SD
 White blood cell count, cells/μL5200 ± 11898200 ± 46206200 ± 38337900 ± 383710,950 ± 5146
 Lymphocyte count, cells/μL1058 ± 516.40925 ± 689.501435 ± 1023851 ± 363.3695 ± 441
 Neutrophil count, cells/μLND6100 ± 49363715 ± 16186100 ± 37689158 ± 5761
 Neutrophil to lymphocyte ratioND6.75 ± 14.282.29 ± 9.156.75 ± 7.4112.56 ± 19.5
 Albumin, g/dLND3.6 ± 0.694.63 ± 0.363.74 ± 0.453.1 ± 0.49
 Alanine aminotransferase, U/LND37.5 ± 486525.5 ± 18.840 ± 744737.9 ± 186
 Aspartate aminotransferase, U/LND36.8 ± 11823 ± 8.2747 ± 28.3645.8 ± 183.2
 C-reactive protein, mg/dLND11.4 ± 9.940.77 ± 3.269.99 ± 8.8318.37 ± 9
 Lactate dehydrogenase, U/LND330.5 ± 199.7178.5 ± 36.23304 ± 122.8501 ± 212.1
Fibrinogen, mg/dLND611.5 ± 192.8353 ± 110.3611.5 ± 172.1654 ± 161
 D-dimer, ng/mLND672 ± 2329313 ± 136.6497.5 ± 913.41472 ± 3224
 Troponin, pg/mLND5.7 ± 286.42.05 ± 1.214.2 ± 5.2414.8 ± 433.5
Cytokines values—median ± SD
 IL-1RA, pg/mLND60.2 ± 387.647.98 ± 36.1957.13 ± 249.292.08 ± 587
 IL-6, pg/mLND24.19 ± 95.4313.27 ± 69.1821.13 ± 60.2542.13 ± 133
 IL-10, pg/mLND15.3 ± 84.4113.38 ± 25.4714.71 ± 108.325.94 ± 84.17
 IL-18, pg/mLND632 ± 546.4516.7 ± 215.9555.9 ± 705.2987.6 ± 420
 MCP-1, pg/mLND531.7 ± 387.3497 ± 867.5541.5 ± 270.6601.3 ± 525.6
 IP-10, pg/mLND1621 ± 20841081 ± 12.021701 ± 20313194 ± 2412
Outcomes—number (%)
 Admission to hospital0 (0)67 (74)0 (0)35 (100)32 (100)
 DeathNA18 (20)0 (0)4 (11)14 (44)
 RecoveryNA73 (80)24 (100)31 (89)18 (56)

SO oxygen saturation, NEWS National Early Warning Score, FiO fraction of inspired oxygen, PaO partial pressure of oxygen, PaO/FiO ratio of arterial oxygen partial pressure to fractional inspired oxygen, NA not applicable, ND not determined, SD standard deviation

Features of COVID-19 patients SO oxygen saturation, NEWS National Early Warning Score, FiO fraction of inspired oxygen, PaO partial pressure of oxygen, PaO/FiO ratio of arterial oxygen partial pressure to fractional inspired oxygen, NA not applicable, ND not determined, SD standard deviation All recruited individuals signed an informed consent prior to the inclusion. The Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán (Mexico) Ethics and Research Institutional Committees approved the study (Ref. 3341) in compliance with the Helsinki declaration.

Multiparametric flow cytometry analysis

Peripheral blood mononuclear cells (PBMCs) were isolated by density gradients with Ficoll-Paque (GE Healthcare Life Sciences). Recovered cells were resuspended in RPMI-1640 (Gibco) and counted before staining procedures with the following conjugated monoclonal antibodies BUV496 anti-human CD19 (BD Horizon), Brilliant Violet 650 anti-human CD38, APC/Cy7 anti-human CD27, Brilliant Violet 421 anti-human CD24, PerCP/Cyanine5.5 anti-human IgD, Alexa Fluor 700 anti-human CD21, PE/Dazzle 594 anti-human CD11c and Zombie Green dye (all from BioLegend). For staining, 2 × 106 cells were treated with human a FcX blocker (BioLegend) for 10 min, then incubated for 30 min at 4 °C with the antibody cocktail, washed, and fixed with fixation buffer (BioLegend) for 1 h. Lastly, cells were washed once with cell staining buffer (BioLegend) and then resuspended in 300 μL of the same buffer for immediate flow cytometric analysis on a BD LSRFortessa using FACSDiva software (BD Biosciences), acquiring at least 1 × 106 cells. Files were analyzed using FlowJo v10 software (BD Biosciences) with the strategy shown in Fig. 1A, using Fluorescence Minus One (FMO) controls to define gates plus CompBeads (BD Biosciences) and single stained fluorescent samples to achieve compensation.
Fig. 1

DN B cell subsets in COVID-19 patients. A Gating strategy for the identification of the indicated B cell subsets in PBMCs (depicting representative results from a healthy control) previously selected from singlets gate (SSC-A vs. SSC-H), live Zombie Green− cells gate, and total CD19+ B cells gate. B Comparative analysis of total frequencies of CD19+ B cells on the left panel and absolute numbers on the right panel. C Comparative analysis of total DN cells; frequencies relative to CD19+ B cells on the left panel and absolute numbers on the right panel. D Comparative analysis of DN1 subset; frequencies relative to CD19+ B cells on the left panel and absolute numbers on the right panel. E Comparative analysis of DN2 subset. F Comparative analysis of DN3 subset. G Comparative analysis of DN4 subset. All frequency or absolute number values are displayed as mean (dashed line) plus lower and upper quartiles (dotted lines). Patients infected with SARS-CoV-2 (n = 91), subdivided in mild/moderate (n = 24), severe (n = 35) or critical (n = 32) disease groups plus healthy controls (n = 15, negative PCR for SARS-CoV-2) were included in all graphs. The data were analyzed by a Kruskal–Wallis test followed by a Dunn's post hoc test. *p ≤ 0.05, **p ≤ 0.01, ***p ≤ 0.001, ****p ≤ 0.0001

DN B cell subsets in COVID-19 patients. A Gating strategy for the identification of the indicated B cell subsets in PBMCs (depicting representative results from a healthy control) previously selected from singlets gate (SSC-A vs. SSC-H), live Zombie Green− cells gate, and total CD19+ B cells gate. B Comparative analysis of total frequencies of CD19+ B cells on the left panel and absolute numbers on the right panel. C Comparative analysis of total DN cells; frequencies relative to CD19+ B cells on the left panel and absolute numbers on the right panel. D Comparative analysis of DN1 subset; frequencies relative to CD19+ B cells on the left panel and absolute numbers on the right panel. E Comparative analysis of DN2 subset. F Comparative analysis of DN3 subset. G Comparative analysis of DN4 subset. All frequency or absolute number values are displayed as mean (dashed line) plus lower and upper quartiles (dotted lines). Patients infected with SARS-CoV-2 (n = 91), subdivided in mild/moderate (n = 24), severe (n = 35) or critical (n = 32) disease groups plus healthy controls (n = 15, negative PCR for SARS-CoV-2) were included in all graphs. The data were analyzed by a Kruskal–Wallis test followed by a Dunn's post hoc test. *p ≤ 0.05, **p ≤ 0.01, ***p ≤ 0.001, ****p ≤ 0.0001

Cytokine and chemokine determinations

The concentrations of six cytokines and chemokines: IL-1RA, IL-6, IL-10, IL-18, monocyte chemoattractant protein 1 (MCP-1)/CCL2, and interferon gamma-induced protein (IP-10)/CXCL10, in serum of the patients, were measured using the MILLIPLEX MAP Human Cytokine/Chemokine Magnetic Bead Panel kit (EMD Millipore) on a 2-laser Bio-Plex 200 suspension array system combined with a Bio-Plex Pro Wash Station (both from Bio-Rad), according to the manufacturer’s instructions. Bead-fluorescence intensity readings for all the samples and standards were converted into the corresponding analyte concentrations employing the Bio-Plex Manager software v6.2 (Bio-Rad). The included cytokines and chemokines were selected among our available multiplex assays, according to the previous reports regarding their potential utility as blood-associated prognostic biomarkers in patients with COVID-19 [8, 21].

Statistics and bioinformatics analysis

Principal component analysis (PCA) method was performed on RStudio (1.3), running on R software (4.0). All numerical variables were scaled to have unit variance before the analysis. PCA was processed with FactoMineR library and graphically produced with Factoextra package. We used fviz_pca_biplot() function to represent DN variables contribution and their relation to patients disease severity. We presented a bar plot of variables using fviz_pca_biplot() to visualize the three dimensions global contribution. Moreover, we employed Matlab on 20b version for plotting three-dimensional PCA representation.

Results

DN B cell subsets are altered in COVID-19 patients

To identify DN subsets in peripheral blood, we segregate CD27− cells from total CD19+ B cells. We then exclude CD24+ cells to select a “mature” population composed by IgD+ naïve B cells and the remaining DN IgD− cells, further subdivided into four subsets: DN1, DN2, DN3, and DN4, based on their CD11c and CD21 expression. This gating strategy is depicted in Fig. 1A. When total frequency or absolute CD19+ cell numbers were analyzed, we did not find significant differences in the B cell compartment between healthy subjects and COVID-19 patients of any category (Fig. 1B), as reported previously by our research group and also by other authors [12, 22]. We also found that conventional circulating B cell subsets, including transitional (T1/T2) CD24hi CD38hi CD27−, naïve CD38lo/− CD27− IgD+, unswitched-memory (USwM) CD27+ IgD+, switched-memory (SwM) CD27+ IgD+, and plasmablasts (ASC) CD38hi CD27hi exhibited similar trends to what has been informed in recent literature [6, 12] with the expansion of immature B cells in mild/moderate COVID-19, increase of plasmablasts in severe and critical patients, and a loss of memory subsets in almost all patients (Supplemental Fig. 1). Interestingly, some differences emerged when total DN cell frequencies were compared, particularly among mold/moderate and severe or critical patients (Fig. 1C). Outstandingly, several significant changes could be detected when each DN subset was analyzed: DN1 cell frequencies and absolute numbers from COVID-19 patients appeared as decreased when compared with healthy donors, a feature that seems to be more pronounced according to the disease severity (Fig. 1D). In contrast, DN2 cells exhibited a slight increase, most noticeable when critical patients were analyzed (Fig. 1E). Similarly, significant increments in the DN3 cell frequencies and absolute numbers in the patients were also detected (Fig. 1F) but appearing much more robust than the DN2 counterparts. Finally, the DN4 fraction was seen almost absent from circulation in all the groups analyzed, finding no significant differences in their numbers (Fig. 1G).

DN subpopulations are associated with different clinical “signatures” of COVID-19

To elucidate the potential roles of these rare B cell subsets, we tried to associate their amounts in peripheral blood to the patients’ available clinical and laboratory features, presented in Table 1 and compared among COVID-19 groups in Supplemental Fig. 2. When correlation analyses including all variables were performed, it becomes evident that each DN subset displayed a specific matrix pattern (Fig. 2). Interestingly, the DN1 frequencies and absolute numbers patterns stand out since they revealed mainly negative (several significant) correlations with many of the analyzed parameters, mainly related to a pro-inflammatory status in COVID-19 patients [23, 24]. Correspondingly, DN1 numbers positively correlated with oxygen parameters (SO2 and PaFi) and show a negative correlation with a surrogate of inflammation, such as albumin. Contrastingly, the remaining DN subsets exhibited opposite patterns, a feature that is particularly marked when the DN3 cell frequencies or absolute numbers are seen.
Fig. 2

DN subsets correlate with COVID-19-patient features. Correlation matrix showing a graphical representation of calculated Spearman's coefficient calculations between the B cell subset frequencies and indicated serum cytokines, clinical and laboratory variables of total COVID-19 patients (n = 91) in our cohort. The underlying color scale indicates Spearman's coefficient values. *p ≤ 0.05, **p ≤ 0.01, ***p ≤ 0.001

DN subsets correlate with COVID-19-patient features. Correlation matrix showing a graphical representation of calculated Spearman's coefficient calculations between the B cell subset frequencies and indicated serum cytokines, clinical and laboratory variables of total COVID-19 patients (n = 91) in our cohort. The underlying color scale indicates Spearman's coefficient values. *p ≤ 0.05, **p ≤ 0.01, ***p ≤ 0.001 Additionally, when the outcomes of severe and critical (hospitalized) patients were analyzed, we observed exciting differences: DN1 cells were detected as significantly reduced in their frequency and absolute numbers in deceased individuals when compared to recovered ones (Fig. 3A); contrariwise, the DN3 subset appeared slightly increased in the deceased patients, with a significant difference only when frequencies were analyzed (Fig. 3C). Finally, no outcome differences were observed when DN2 or DN4 cell numbers were examined (Fig. 3B, D).
Fig. 3

Numbers of DN B cell subsets according to COVID-19 hospitalized patients’ outcome. Comparative analysis of DN1 (A), DN2 (B), DN3 (C), or DN4 (D) frequencies relative to CD19+ B cells and absolute numbers according to severe and critical (hospitalized) COVID-19 patients’ (n = 67) outcomes. The data were analyzed by a Kruskal–Wallis test followed by a Dunn's post hoc test. * p ≤ 0.05

Numbers of DN B cell subsets according to COVID-19 hospitalized patients’ outcome. Comparative analysis of DN1 (A), DN2 (B), DN3 (C), or DN4 (D) frequencies relative to CD19+ B cells and absolute numbers according to severe and critical (hospitalized) COVID-19 patients’ (n = 67) outcomes. The data were analyzed by a Kruskal–Wallis test followed by a Dunn's post hoc test. * p ≤ 0.05

DN B cell subset segregate critical and mild/moderate COVID-19 patients

We segregate COVID-19 patients by analyzing all available clinical and laboratory variables plus DN1, DN2, and DN3 subsets frequencies and absolute numbers (DN4 values were excluded since these cells were almost absent in patients and did not contribute to groups segregation), using PCA in a 3D scatter-plot visualization (Fig. 4A). Axes include the three components with a higher proportion of the variation, 28.6%, 8.7%, and 6.4%, respectively. The plotted data represent 43.7% of the complete data variation, making it more informative and accurate for interpretation. Also, we have included 95% confidence ellipses to show intersection areas among severity.
Fig. 4

DN B cells contribute to segregate COVID-19 patients by severity of the disease. 3-D (A) and 2-D (B) views of PCA considering all measured variables in COVID-19 patients, including the frequencies (%) and absolute numbers (#) of DN1, DN2, and DN3 subsets, clinical/laboratory values (respiratory rate, oxygen saturation, arterial partial pressure of oxygen/fraction of inspired oxygen ratio, days after symptom onset, leukocyte, lymphocyte, and neutrophil counts, alanine aminotransferase, aspartate aminotransferase, albumin, C-reactive protein, lactate dehydrogenase, fibrinogen, D-dimer, troponin, and National Early Warning Score) and cytokines (IL-1RA, IL-6, IL-10, IL-18, MCP-1, and IP-10). Each point represents a single patient projected to the first principal components, and colors are associated with the COVID-19 severity, as indicated. The 2-D view includes arrows representing the relative contributions of each of DN cell subsets, according to the indicated scale. The 3-D view only includes patients’ projection and severity but including three principal components. Both views contain 95% confidence ellipses

DN B cells contribute to segregate COVID-19 patients by severity of the disease. 3-D (A) and 2-D (B) views of PCA considering all measured variables in COVID-19 patients, including the frequencies (%) and absolute numbers (#) of DN1, DN2, and DN3 subsets, clinical/laboratory values (respiratory rate, oxygen saturation, arterial partial pressure of oxygen/fraction of inspired oxygen ratio, days after symptom onset, leukocyte, lymphocyte, and neutrophil counts, alanine aminotransferase, aspartate aminotransferase, albumin, C-reactive protein, lactate dehydrogenase, fibrinogen, D-dimer, troponin, and National Early Warning Score) and cytokines (IL-1RA, IL-6, IL-10, IL-18, MCP-1, and IP-10). Each point represents a single patient projected to the first principal components, and colors are associated with the COVID-19 severity, as indicated. The 2-D view includes arrows representing the relative contributions of each of DN cell subsets, according to the indicated scale. The 3-D view only includes patients’ projection and severity but including three principal components. Both views contain 95% confidence ellipses We also deliver a 2D scatter-biplot to visualize our DN B cells’ influential degree independently between principal components 1 and 2 (Fig. 4B). We observed that the group of variables: DN2 frequency (where frequency is denoted as %), DN2 absolute counts (where absolute counts are symbolized as #), and DN3#, are positively correlated. A negative correlation among DN1% and the latter group of variables can be observed, and in the same way between DN1# and DN3%. The most explainable variables are determined by vectors magnitude (arrows size) being DN1%, DN2%, and DN2#. Finally, the fact that the presence of DN1 subset is correlated with mild/moderate patients is validated as well as for DN2/3 subsets with critical patients.

Discussion

Although B cells’ contribution to infection resolution is usually set at advanced or chronic stages, there are some reports suggesting that some subsets of this lineage could participate during acute phases of infectious disease, in other ways different from antibody secretion. Such “atypical” B lymphocytes, which certainly possess innate-like properties due to their high Toll-like receptors (TLRs) responsiveness, include the DN cells that are notably expanded in viral or parasitic infections, as well as autoimmune disorders [3, 25, 26]. Apart from the DN2 subset, that has been previously reported as expanded in SLE, Hepatitis C or HIV infection [3, 27], more recently in COVID-19 [12], and described as primed plasma cell precursors differentiated through an extra-follicular pathway [7]; almost nothing is known about the remaining DN subpopulations. Interestingly, we found significant alterations in DN1, DN2, and DN3 subsets during COVID-19 acute development in this work. As expected, the DN2 subset was found expanded in COVID-19, increasing according to the disease severity but predominantly on the critical patients. That change could be explained by the prominent proinflammatory environment raised by these individuals; in our cohort, this could be evidenced by the positive correlation of these DN2 cells with IL-18 amounts, which could probably be involved in their expansion since it is associated with type 1 immune responses [28] that seem to be necessary for their differentiation [29]. As DN2 also demonstrated positive correlations with disease severity indicators (such as SO2 or NEWS), the notion of a contributing proinflammatory milieu is again supported. However, we cannot discard these cells’ direct influence on disease aggravation since their proinflammatory profile has been described previously [30, 31]. Like DN2, the DN3 subset displayed a similar but ever more robust expansion, enhanced in more severe patients; interestingly, this feature is more strongly associated with an inflammatory-associated pattern, where inflammation markers positively correlate with DN3 amounts whereas ventilatory parameters show the opposite. Additionally, DN3 augmented proportion appears to be linked to worse outcomes in more severe patients, making us suspect a proinflammatory function of these cells. Despite having a complete unknown function or origin, COVID-19 seems is the only reported condition where DN3 cells are overrepresented, positioning them as exciting candidates for further studies. On the other hand, DN1 cells exhibited a reduction in their amounts in COVID-19, being more evident in critical cases. When correlation analyses with clinical/laboratory features and cytokines were done, DN1 cell numbers displayed an opposite pattern than DN2 or DN3 cells, where several negative correlations with proinflammatory elements plus positive values for ventilatory parameters were observed. Hence, the high number of DN1 cells seems to be associated with a less severe disease course and even a better outcome in hospitalized patients. Again, since nothing is reported about this subset's functional roles, we can only argue about their anti-inflammatory potential since it has been reported that cells with a similar phenotype to DNs have been documented to enhance CD4+CD25hi regulatory T cells (Treg) proliferation in vitro [32]. In this way, it is possible that the DN1 subgroup could contain a non-previously described regulatory B cells (Breg) population, helping to maintain homeostasis in mild/moderate COVID-19 but being lost in severe or critical cases. Finally, as we employ the DN subset amounts together with some clinical/laboratory descriptors and cytokines (previously described as relevant as prognostic biomarkers in COVID-19 [8, 21]) for multivariate approaches, we conclude that the measurement of these cells can definitively support the segregation of patients according to disease severity, where mild/moderate and severe/critical patients exhibit major segregating-contributions of DN1 and DN2/DN3, respectively, with similar or even better robustness than most of the variables studied here (Supplemental Fig. 3). The usefulness of these DN subset measurements as potential biomarkers for prognostic approaches is a feature that is not possible to determine in our cohort and needs to be addressed by a longitudinal study that possibly will shed light regarding the pathogenic or protective functional roles of these traditionally neglected B cells. Below is the link to the electronic supplementary material. Supplementary file1 (DOCX 31192 KB)
  32 in total

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Authors:  M Perez-Andres; B Paiva; W G Nieto; A Caraux; A Schmitz; J Almeida; R F Vogt; G E Marti; A C Rawstron; M C Van Zelm; J J M Van Dongen; H E Johnsen; B Klein; A Orfao
Journal:  Cytometry B Clin Cytom       Date:  2010       Impact factor: 3.058

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Review 3.  Innate-like B cell subsets during immune responses: Beyond antibody production.

Authors:  Sandra Romero-Ramírez; Itze C Navarro-Hernandez; Rodrigo Cervantes-Díaz; Víctor A Sosa-Hernández; Ernesto Acevedo-Ochoa; Ari Kleinberg-Bild; Ricardo Valle-Rios; David E Meza-Sánchez; José M Hernández-Hernández; José L Maravillas-Montero
Journal:  J Leukoc Biol       Date:  2018-11-20       Impact factor: 4.962

4.  Distinct Effector B Cells Induced by Unregulated Toll-like Receptor 7 Contribute to Pathogenic Responses in Systemic Lupus Erythematosus.

Authors:  Scott A Jenks; Kevin S Cashman; Esther Zumaquero; Urko M Marigorta; Aakash V Patel; Xiaoqian Wang; Deepak Tomar; Matthew C Woodruff; Zoe Simon; Regina Bugrovsky; Emily L Blalock; Christopher D Scharer; Christopher M Tipton; Chungwen Wei; S Sam Lim; Michelle Petri; Timothy B Niewold; Jennifer H Anolik; Greg Gibson; F Eun-Hyung Lee; Jeremy M Boss; Frances E Lund; Ignacio Sanz
Journal:  Immunity       Date:  2018-10-09       Impact factor: 31.745

5.  IFNγ induces epigenetic programming of human T-bethi B cells and promotes TLR7/8 and IL-21 induced differentiation.

Authors:  Esther Zumaquero; Sara L Stone; Christopher D Scharer; Scott A Jenks; Anoma Nellore; Betty Mousseau; Antonio Rosal-Vela; Davide Botta; John E Bradley; Wojciech Wojciechowski; Travis Ptacek; Maria I Danila; Jeffrey C Edberg; S Louis Bridges; Robert P Kimberly; W Winn Chatham; Trenton R Schoeb; Alexander F Rosenberg; Jeremy M Boss; Ignacio Sanz; Frances E Lund
Journal:  Elife       Date:  2019-05-15       Impact factor: 8.140

Review 6.  Cytokine Storms: Understanding COVID-19.

Authors:  Nilam Mangalmurti; Christopher A Hunter
Journal:  Immunity       Date:  2020-06-28       Impact factor: 31.745

7.  Major alterations in the mononuclear phagocyte landscape associated with COVID-19 severity.

Authors:  Egle Kvedaraite; Laura Hertwig; Indranil Sinha; Andrea Ponzetta; Ida Hed Myrberg; Magda Lourda; Majda Dzidic; Mira Akber; Jonas Klingström; Elin Folkesson; Jagadeeswara Rao Muvva; Puran Chen; Sara Gredmark-Russ; Susanna Brighenti; Anna Norrby-Teglund; Lars I Eriksson; Olav Rooyackers; Soo Aleman; Kristoffer Strålin; Hans-Gustaf Ljunggren; Florent Ginhoux; Niklas K Björkström; Jan-Inge Henter; Mattias Svensson
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

8.  SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients.

Authors:  Marton Olbei; Isabelle Hautefort; Dezso Modos; Agatha Treveil; Martina Poletti; Lejla Gul; Claire D Shannon-Lowe; Tamas Korcsmaros
Journal:  Front Immunol       Date:  2021-03-01       Impact factor: 7.561

9.  Atypical and classical memory B cells produce Plasmodium falciparum neutralizing antibodies.

Authors:  Matthias F Muellenbeck; Beatrix Ueberheide; Borko Amulic; Alexandra Epp; David Fenyo; Christian E Busse; Meral Esen; Michael Theisen; Benjamin Mordmüller; Hedda Wardemann
Journal:  J Exp Med       Date:  2013-01-14       Impact factor: 14.307

10.  Evidence for HIV-associated B cell exhaustion in a dysfunctional memory B cell compartment in HIV-infected viremic individuals.

Authors:  Susan Moir; Jason Ho; Angela Malaspina; Wei Wang; Angela C DiPoto; Marie A O'Shea; Gregg Roby; Shyam Kottilil; James Arthos; Michael A Proschan; Tae-Wook Chun; Anthony S Fauci
Journal:  J Exp Med       Date:  2008-07-14       Impact factor: 14.307

View more
  4 in total

Review 1.  Hallmarks of Severe COVID-19 Pathogenesis: A Pas de Deux Between Viral and Host Factors.

Authors:  Roberta Rovito; Matteo Augello; Assaf Ben-Haim; Valeria Bono; Antonella d'Arminio Monforte; Giulia Marchetti
Journal:  Front Immunol       Date:  2022-06-10       Impact factor: 8.786

2.  Acute Surge of Atypical Memory and Plasma B-Cell Subsets Driven by an Extrafollicular Response in Severe COVID-19.

Authors:  Taeseob Lee; Yuri Kim; Hyun Je Kim; Na-Young Ha; Siyoung Lee; BumSik Chin; Nam-Hyuk Cho
Journal:  Front Cell Infect Microbiol       Date:  2022-07-08       Impact factor: 6.073

3.  Autoantibodies elicited with SARS-CoV-2 infection are linked to alterations in double negative B cells.

Authors:  Moriah J Castleman; Megan M Stumpf; Nicholas R Therrien; Mia J Smith; Kelsey E Lesteberg; Brent E Palmer; James P Maloney; William J Janssen; Kara J Mould; J David Beckham; Roberta Pelanda; Raul M Torres
Journal:  Front Immunol       Date:  2022-09-05       Impact factor: 8.786

Review 4.  The role of B cells in COVID-19 infection and vaccination.

Authors:  Shiru Chen; Fei Guan; Fabio Candotti; Kamel Benlagha; Niels Olsen Saraiva Camara; Andres A Herrada; Louisa K James; Jiahui Lei; Heather Miller; Masato Kubo; Qin Ning; Chaohong Liu
Journal:  Front Immunol       Date:  2022-08-30       Impact factor: 8.786

  4 in total

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