| Literature DB >> 34826340 |
Nicolas H Thurin1, Romin Pajouheshnia2, Giuseppe Roberto3, Caitlin Dodd4, Giulia Hyeraci3, Claudia Bartolini3, Olga Paoletti3, Hedvig Nordeng4, Helle Wallach-Kildemoes4, Vera Ehrenstein5, Elena Dudukina5, Thomas MacDonald6, Giorgia De Paoli6, Maria Loane7, Christine Damase-Michel8, Anna-Belle Beau8, Cécile Droz-Perroteau1, Régis Lassalle1, Jorieke Bergman9, Karin Swart10, Tania Schink11, Clara Cavero-Carbonell12, Laia Barrachina-Bonet12, Ainhoa Gomez-Lumbreras13, Maria Giner-Soriano13, María Aragón13, Amanda J Neville14, Aurora Puccini15, Anna Pierini16, Valentina Ientile17, Gianluca Trifirò18, Anke Rissmann19, Maarit K Leinonen20, Visa Martikainen20, Sue Jordan21, Daniel Thayer21, Ieuan Scanlon21, Mary E Georgiou22, Marianne Cunnington22, Morris Swertz9, Miriam Sturkenboom23, Rosa Gini3.
Abstract
In 2019, the Innovative Medicines Initiative (IMI) funded the ConcePTION project-Building an ecosystem for better monitoring and communicating safety of medicines use in pregnancy and breastfeeding: validated and regulatory endorsed workflows for fast, optimised evidence generation-with the vision that there is a societal obligation to rapidly reduce uncertainty about the safety of medication use in pregnancy and breastfeeding. The present paper introduces the set of concepts used to describe the European data sources involved in the ConcePTION project and illustrates the ConcePTION Common Data Model (CDM), which serves as the keystone of the federated ConcePTION network. Based on data availability and content analysis of 21 European data sources, the ConcePTION CDM has been structured with six tables designed to capture data from routine healthcare, three tables for data from public health surveillance activities, three curated tables for derived data on population (e.g., observation time and mother-child linkage), plus four metadata tables. By its first anniversary, the ConcePTION CDM has enabled 13 data sources to run common scripts to contribute to major European projects, demonstrating its capacity to facilitate effective and transparent deployment of distributed analytics, and its potential to address questions about utilization, effectiveness, and safety of medicines in special populations, including during pregnancy and breastfeeding, and, more broadly, in the general population.Entities:
Mesh:
Year: 2021 PMID: 34826340 PMCID: PMC9299060 DOI: 10.1002/cpt.2476
Source DB: PubMed Journal: Clin Pharmacol Ther ISSN: 0009-9236 Impact factor: 6.903
ConcePTION conceptual framework
Data bank families included in at least two ConcePTION data sources
| Data bank (number of data sources including it) | Originator | Organizations which collect data | Prompts for records in the data bank familyb | Typical content | Less common content |
|---|---|---|---|---|---|
| Hospital administrative records (16) | Healthcare payera | Healthcare service providers: hospitals | Discharge from a hospitalization; a specialist encounter or emergency department visit may also prompt records | Diagnosis/signs/symptoms observed; main diagnosis that led to the hospitalization; administration of procedures; specialty of the ward; outcome | Socio‐economic status, test results, hospital name, indicators of emergency hospitalization/overnight stay |
| Primary care medical records (5) | Network of primary care practices | Primary care practices | Contact between patients and their primary care practice: face‐to‐face/telephone/online. Records may be prompted when hospital discharge information is received by the practice (e.g., UK data banks) | Registration with the practice; diagnosis/signs/symptoms; prescription of diagnostic tests/medicines | Socio‐economic status, test results, vaccination, dosing regimen or indication of prescribed medicines, hospital/ specialist referrals |
| Pharmacy dispensings records (15) | Healthcare payera | Healthcare service providers: pharmacies | Dispensing of a medicine for reimbursement by a healthcare payer. Prompted by community pharmacies, hospital pharmacies or both, mostly by dispensing for outpatient use and/or for outpatient administration, rarely by inpatient use | National code of the medicinal product, ATC code and amount dispensed | Link to the prescription, batch number, condition of pregnancy of the patient, batch number |
| Birth registry (12) | Public health/ statistical authority, | Hospitals or midwives or children health services | Live births observed in hospital or at the first visit of the child. If the prompt is delivery in hospital, stillbirths prompt a record and are distinguished from spontaneous abortion by the gestational age at labor | Information on the mother, on the pregnancy, on the delivery, on the child(ren) | Information on the father |
| Induced terminations registry (4) | Public health/ statistical authority, authority allowing terminations | Hospitals executing the procedure or practices authorizing the procedure | Request or execution of an induced termination. The record may be anonymous | Information on the circumstances of the termination, on the pregnancy and on the woman | Link to the corresponding hospital administrative record |
| Congenital anomaly registry (10) | Public health authority, research center | Hospitals, healthcare professionals involved in the delivery | Recording of a congenital anomaly, at birth or during a follow‐up of several years; a fetal death with an anomaly | EUROCAT core variables | Other EUROCAT variables |
| Inhabitant registry (3) | Civic authority (national or regional) | Civic offices | Immigration/emigration in a country or region | Immigration/ emigration date, birth date | Date of death, address |
| Registration with healthcare system (6) | Healthcare payera | Healthcare service office | Registration with a healthcare system (primary care physician and/or health insurer) | Date of registration | Date of de‐registration, physician/insurer name, address |
| Exemptions from copayment (7) | Healthcare payera | Healthcare service office | Some healthcare payers admit exemptions from copayment due to some health conditions | Cause for exemption | |
| Death registry (6) | Public health authority | Public health authority | Recording of the cause of death | Principal cause of death | Secondary causes of death |
ATC, Anatomic Therapeutic Chemical.
a Definition of health payers, from Donnelly et al. : single payer refers to a health system that is financed by a single entity; in its common usage, that single entity is government. Examples: Italy, Denmark, Norway, Spain, and the United Kingdom. Multiple payer refers to a health system that is financed through more than a single entity, one of which may be governmental. Examples: Germany, the Netherlands, and France. Whether a healthcare system is single‐ or multiple‐payer does not in and of itself define the system in terms of coverage. Universal coverage means simply that all people within a particular jurisdiction have access to healthcare, be it single‐ or multiple‐ payer. Examples: all countries in this study. b The prompts identified by the 20 DAPs are listed for each data bank family. However, not all prompts within a family result in creation of a record for each individual data bank within that family.
Figure 1Data banks in each data source. Only data banks included in at least two data sources are represented, the others are summarized in “Other.” The data banks are described in Table 2.
Figure 2ConcePTION CDM version 2.2. Solid black lines refer to the linkage across records of the same person; dotted lines refer to linkage across items extracted from the same record; solid grey lines refer to linkage from items referring to a medicinal product to the product itself. Tables are color coded according to the section of the common data model they belong to: Routine healthcare data are represented in green, Surveillance data in dark blue, Curated data in light blue, and Metadata in grey. CDM, Common Data Model; ETL, Extract, Transform and Load.
Figure 3Example of Entity‐Attribute‐Value structure. The data contained in the upper table is represented in the lower table as an Entity Attribute Value fashion. Person_id is the Entity; HEIGHT, WEIGHT, and GESTAGE_WEEKS are the Attributes; and, for instance, 169 is the Value of Attribute HEIGHT for Entity P1.
Figure 4Common ETL between original families of data banks and tables of the ConcePTION CDM version 2.2. In the Figure, each arrow represents a pair formed by an original family of data bank and a ConcePTION CDM target table. CDM, Common Data Model.