Literature DB >> 34825374

Population Structure of Macaca fascicularis aurea, and their Genetic Relationships with M. f. fascicularis and M. mulatta Determined by 868 RADseq-Derived Autosomal SNPs-A consideration for biomedical research.

Poompat Phadphon1, Sree Kanthaswamy2,3, Robert F Oldt2,4, Yuzuru Hamada5, Suchinda Malaivijitnond1,5.   

Abstract

BACKGROUND: This study examined the population structure of Macaca fascicularis aurea and their genetic relationships with M. f. fascicularis and M. mulatta.
METHODS: The study analyzed 868 RADseq-derived SNPs from samples representing the entire distribution range of M. f. aurea, including their inter- and intraspecific hybrid zones.
RESULTS: The study supports a M. mulatta/Indochinese M. f. fascicularis, Sundaic M. f. fascicularis, and M. f. aurea trichotomy; M. f. aurea was genetically distinct from both forms of M. f. fascicularis and M. mulatta. Hybridization between M. f. aurea and M. f. fascicularis occurred in two directions: south-north (8°25' to 15°56') and west-east (98°28' to 99°02'). Low levels of M. mulatta introgression were also detected in M. f. aurea.
CONCLUSION: This study showcases a complicated scenario of genetic relationships between the M. fascicularis subspecies and between M. fascicularis and M. mulatta and underscores the importance of these taxa's population structure and genetic relationships for biomedical research.
© 2021 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  Burmese long-tailed macaque; SNPs; admixture; common long-tailed macaque; composition; cynomolgus macaque; population genetics; rhesus macaque; structure

Mesh:

Year:  2021        PMID: 34825374      PMCID: PMC8849537          DOI: 10.1111/jmp.12554

Source DB:  PubMed          Journal:  J Med Primatol        ISSN: 0047-2565            Impact factor:   0.667


  51 in total

Review 1.  Applications of next-generation sequencing to phylogeography and phylogenetics.

Authors:  John E McCormack; Sarah M Hird; Amanda J Zellmer; Bryan C Carstens; Robb T Brumfield
Journal:  Mol Phylogenet Evol       Date:  2011-12-14       Impact factor: 4.286

2.  Secondary contact and genomic admixture between rhesus and long-tailed macaques in the Indochina Peninsula.

Authors:  Tsuyoshi Ito; Sreetharan Kanthaswamy; Srichan Bunlungsup; Robert F Oldt; Paul Houghton; Yuzuru Hamada; Suchinda Malaivijitnond
Journal:  J Evol Biol       Date:  2020-07-31       Impact factor: 2.411

3.  Genetic analysis of samples from wild populations opens new perspectives on hybridization between long-tailed (Macaca fascicularis) and rhesus macaques (Macaca mulatta).

Authors:  Srichan Bunlungsup; Sree Kanthaswamy; Robert F Oldt; David Glenn Smith; Paul Houghton; Yuzuru Hamada; Suchinda Malaivijitnond
Journal:  Am J Primatol       Date:  2017-11-02       Impact factor: 2.371

4.  Rhesus and Crab-Eating Macaques: Intergradation in Thailand.

Authors:  J Fooden
Journal:  Science       Date:  1964-01-24       Impact factor: 47.728

5.  Long-tailed macaques select mass of stone tools according to food type.

Authors:  Michael D Gumert; Suchinda Malaivijitnond
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-10-07       Impact factor: 6.237

6.  INTERSPECIES HYBRIDIZATION AND THE STRATIFICATION OF NUCLEAR GENETIC VARIATION OF RHESUS (MACACA MULATTA) AND LONG-TAILED MACAQUES (MACACA FASCICULARIS).

Authors:  Sree Kanthaswamy; Jessica Satkoski; Debra George; Alexander Kou; Bethany Joy-Alise Erickson; David Glenn Smith
Journal:  Int J Primatol       Date:  2008       Impact factor: 2.264

7.  DNA-based Determination of Ancestry in Cynomolgus Macaques (Macaca fascicularis).

Authors:  George Q Day; Jillian Ng; Robert F Oldt; Paul W Houghton; David Glenn Smith; Sree Kanthaswamy
Journal:  J Am Assoc Lab Anim Sci       Date:  2018-08-30       Impact factor: 1.232

8.  Evolutionary pattern of Macaca fascicularis in Southeast Asia inferred using Y-chromosomal gene.

Authors:  Jeffrine J Rovie-Ryan; Faisal Ali Anwarali Khan; Mohd Tajuddin Abdullah
Journal:  BMC Ecol Evol       Date:  2021-02-15

9.  MamuSNP: a resource for Rhesus Macaque (Macaca mulatta) genomics.

Authors:  Ripan S Malhi; Brad Sickler; Dawei Lin; Jessica Satkoski; Raul Y Tito; Debbie George; Sreetharan Kanthaswamy; David Glenn Smith
Journal:  PLoS One       Date:  2007-05-09       Impact factor: 3.240

10.  Comparison of rhesus and cynomolgus macaques as an infection model for COVID-19.

Authors:  Francisco J Salguero; Andrew D White; Gillian S Slack; Susan A Fotheringham; Kevin R Bewley; Karen E Gooch; Stephanie Longet; Holly E Humphries; Robert J Watson; Laura Hunter; Kathryn A Ryan; Yper Hall; Laura Sibley; Charlotte Sarfas; Lauren Allen; Marilyn Aram; Emily Brunt; Phillip Brown; Karen R Buttigieg; Breeze E Cavell; Rebecca Cobb; Naomi S Coombes; Alistair Darby; Owen Daykin-Pont; Michael J Elmore; Isabel Garcia-Dorival; Konstantinos Gkolfinos; Kerry J Godwin; Jade Gouriet; Rachel Halkerston; Debbie J Harris; Thomas Hender; Catherine M K Ho; Chelsea L Kennard; Daniel Knott; Stephanie Leung; Vanessa Lucas; Adam Mabbutt; Alexandra L Morrison; Charlotte Nelson; Didier Ngabo; Jemma Paterson; Elizabeth J Penn; Steve Pullan; Irene Taylor; Tom Tipton; Stephen Thomas; Julia A Tree; Carrie Turner; Edith Vamos; Nadina Wand; Nathan R Wiblin; Sue Charlton; Xiaofeng Dong; Bassam Hallis; Geoffrey Pearson; Emma L Rayner; Andrew G Nicholson; Simon G Funnell; Julian A Hiscox; Mike J Dennis; Fergus V Gleeson; Sally Sharpe; Miles W Carroll
Journal:  Nat Commun       Date:  2021-02-24       Impact factor: 14.919

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  1 in total

1.  Population Scale Analysis of Centromeric Satellite DNA Reveals Highly Dynamic Evolutionary Patterns and Genomic Organization in Long-Tailed and Rhesus Macaques.

Authors:  Worapong Singchat; Syed Farhan Ahmad; Kitipong Jaisamut; Thitipong Panthum; Nattakan Ariyaraphong; Ekaphan Kraichak; Narongrit Muangmai; Prateep Duengkae; Sunchai Payungporn; Suchinda Malaivijitnond; Kornsorn Srikulnath
Journal:  Cells       Date:  2022-06-17       Impact factor: 7.666

  1 in total

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